Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1465 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1514059--1514118
27
2.2
27
84
3
75
53
1
0
45
1.10
1514218--1514285
23
3.0
23
82
8
77
50
8
1
39
1.43
1514249--1514273
13
1.9
13
100
0
50
48
8
4
40
1.51
1514472--1514510
2
20.0
2
94
5
71
51
0
0
48
1.00
1518062--1518105
22
2.0
22
100
0
88
36
18
9
36
1.82
1521915--1521969
23
2.4
23
85
8
69
67
14
5
12
1.40
1525800--1525948
52
2.9
51
88
4
226
30
17
18
33
1.94
1525937--1525961
13
1.9
13
100
0
50
36
16
16
32
1.90
1526002--1526068
33
2.0
33
88
0
98
40
14
11
32
1.83
1526024--1526048
13
1.9
13
100
0
50
32
16
16
36
1.90
1526947--1527095
52
3.0
51
77
16
188
32
17
24
25
1.97
1526995--1527080
43
2.0
43
93
0
145
29
18
24
27
1.98
1527084--1527562
30
16.1
30
78
9
374
25
16
29
28
1.97
1527086--1527562
58
8.0
59
75
11
343
25
16
29
28
1.97
1527086--1527342
88
3.0
88
91
2
387
21
17
29
31
1.96
1527393--1527564
29
6.0
27
80
8
119
23
17
30
28
1.97
1529000--1529107
1
108.0
1
71
0
72
2
1
10
85
0.78
1529000--1529108
31
3.6
29
77
18
107
2
1
11
84
0.81
1529000--1529107
25
4.2
25
78
17
98
2
1
10
85
0.78
1538798--1538824
10
2.7
10
100
0
54
77
22
0
0
0.76
1542950--1543098
52
2.9
51
88
4
226
30
17
18
33
1.94
1543087--1543111
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1543152--1543218
33
2.0
33
88
0
98
40
14
11
32
1.83
1543174--1543198
13
1.9
13
100
0
50
32
16
16
36
1.90
1543494--1545527
477
4.3
476
85
2
2605
34
14
20
30
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!