genome.fa.s98.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592224--592319	36	2.9	33	80	11	117	29	26	13	31	1.94
595233--595279	23	2.0	24	84	12	62	61	19	4	14	1.49
596156--596213	21	2.8	21	80	15	66	20	24	1	53	1.55
598139--598191	25	2.1	25	96	0	97	28	5	28	37	1.80
598542--598580	20	1.9	21	94	5	71	25	15	23	35	1.94
599645--600100	166	2.8	167	82	7	461	30	11	9	48	1.71
599742--600100	166	2.2	165	87	4	506	30	11	9	48	1.72
600591--600656	9	7.1	9	70	13	53	80	0	16	3	0.84
600591--600634	20	2.1	21	88	12	65	84	0	15	0	0.63
600597--600656	22	2.6	23	80	19	72	80	0	16	3	0.85
600584--600655	6	12.0	6	74	21	62	77	0	18	4	0.92
600591--600653	16	3.8	17	80	18	62	79	0	17	3	0.86
601485--601520	16	2.2	17	90	5	56	75	0	2	22	0.94
602431--602461	13	2.4	13	94	0	53	38	9	16	35	1.81
602506--602555	20	2.5	20	87	3	75	36	14	18	32	1.90
607732--607832	29	3.5	29	80	2	114	38	3	21	35	1.72
613023--613063	18	2.2	19	86	4	57	75	0	2	21	0.92
613214--613255	17	2.5	17	88	3	59	21	19	11	47	1.81
621911--621935	13	1.9	13	100	0	50	32	16	16	36	1.90
622378--622422	20	2.1	22	88	8	67	17	48	28	4	1.66
624392--624416	13	1.9	13	100	0	50	32	16	16	36	1.90
624517--624541	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624498--624561	33	2.0	32	84	3	83	39	18	14	28	1.90
631403--631454	13	3.9	13	82	5	68	36	17	13	32	1.89
634096--634149	20	2.7	20	88	5	74	33	12	18	35	1.89
640204--640241	20	1.9	20	100	0	76	39	10	18	31	1.85
640274--640300	13	2.1	13	100	0	54	29	14	14	40	1.86
642761--642977	63	3.2	63	87	10	274	31	20	17	31	1.95
642884--642914	13	2.4	13	100	0	62	32	16	12	38	1.86
642821--642992	76	2.3	76	98	0	335	31	19	16	32	1.94
642976--643043	20	3.8	20	72	25	78	33	13	17	35	1.89
642960--643023	13	5.4	13	78	21	86	32	14	15	37	1.87
642944--643045	33	3.1	33	90	2	125	32	13	17	36	1.89
643903--644019	58	2.1	56	85	6	155	12	29	13	44	1.81
648095--648156	21	3.0	21	70	15	65	12	41	0	45	1.42
648946--648984	9	3.8	10	86	13	53	7	2	7	82	0.94
650529--650580	20	2.6	21	84	9	72	38	11	15	34	1.83
650544--650731	51	3.7	51	85	4	247	29	15	13	41	1.85
654222--654296	24	3.1	24	92	0	114	41	12	24	22	1.87
657297--657372	20	3.8	20	78	3	89	40	10	15	32	1.82
658609--658663	19	2.8	20	88	2	76	29	14	20	36	1.92
662043--662107	19	3.8	18	75	24	77	32	12	16	38	1.86
662045--662115	32	2.2	32	97	0	133	32	12	18	36	1.88
662064--662088	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662159--662184	13	2.0	13	100	0	52	30	15	15	38	1.88
662141--662205	34	1.9	33	90	3	103	26	16	12	44	1.83
664512--664618	51	2.1	51	86	8	146	32	22	11	33	1.89
664512--664618	53	2.1	50	86	8	144	32	22	11	33	1.89
664560--664803	103	2.3	106	83	7	325	27	29	16	27	1.97
664711--664788	27	2.9	27	90	9	115	23	35	20	20	1.96
664744--664942	77	2.5	78	79	6	197	25	29	16	29	1.96
671538--671564	13	2.1	13	100	0	54	29	14	14	40	1.86
671548--671604	19	2.9	19	89	2	87	31	15	17	35	1.92
671649--671679	13	2.4	13	94	0	53	32	12	12	41	1.81
671633--671700	33	2.1	33	86	5	93	32	11	16	39	1.84
675099--675132	4	8.8	4	87	6	52	76	0	0	23	0.79
675606--675681	20	3.7	20	75	16	66	32	14	10	42	1.80
686325--686473	52	2.9	51	88	4	226	30	18	18	32	1.94
686462--686486	13	1.9	13	100	0	50	36	16	16	32	1.90
686527--686593	33	2.0	33	88	0	98	40	14	11	32	1.83
686549--686573	13	1.9	13	100	0	50	32	16	16	36	1.90
687381--687592	52	4.2	52	76	12	208	34	16	24	24	1.95
687487--687576	43	2.1	44	91	2	146	33	17	22	26	1.96
687579--687662	27	3.0	29	83	8	102	19	19	35	26	1.95
687647--687678	16	2.0	16	100	0	64	12	31	31	25	1.92
687620--687708	46	2.0	45	86	6	128	16	21	31	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687663--687886	30	7.3	30	73	13	136	26	16	29	27	1.97
687741--687886	30	5.0	29	82	6	170	25	17	28	28	1.98
687759--687869	57	1.9	57	87	3	161	21	18	29	29	1.97
689409--689448	21	2.0	21	90	5	64	32	20	0	47	1.50
691801--691827	13	2.1	13	100	0	54	29	14	14	40	1.86
691811--691867	19	2.9	19	86	2	78	31	14	19	35	1.91
691912--691942	13	2.4	13	94	0	53	32	12	12	41	1.81
691896--691963	33	2.1	33	88	5	102	30	11	17	39	1.86
695760--695814	19	2.8	19	83	5	65	41	12	14	30	1.83
695757--695813	21	2.8	21	78	5	73	40	12	14	33	1.83
702613--702728	60	1.9	60	89	3	180	22	28	17	31	1.96
702593--702757	30	5.4	30	76	12	131	21	28	16	32	1.96
702702--702766	33	2.0	33	90	6	105	21	26	12	40	1.88
702769--702906	33	4.4	33	72	14	112	23	31	11	34	1.90
702839--703346	27	17.9	27	68	17	208	23	30	12	33	1.91
702724--703240	27	17.2	32	70	16	145	22	30	12	34	1.91
702799--702932	59	2.2	60	84	1	162	24	30	10	34	1.89
702915--703267	59	6.0	59	78	5	288	23	30	12	33	1.91
703087--703144	26	2.2	25	79	8	62	25	27	10	36	1.89
703089--703252	60	2.7	61	82	6	181	27	29	10	32	1.91
703320--703413	33	2.8	33	80	9	118	22	34	10	32	1.88
703479--703784	49	6.2	49	88	0	434	23	25	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704761--704785	13	1.9	13	100	0	50	32	20	16	32	1.94
705143--705206	31	2.0	32	84	3	85	20	14	10	54	1.69
706883--706909	13	2.1	13	100	0	54	29	14	14	40	1.86
708347--708372	13	2.0	13	100	0	52	30	15	15	38	1.88
708327--708390	32	2.0	33	90	3	103	28	14	15	42	1.86
710214--710256	20	2.1	20	82	4	50	9	27	44	18	1.80
716871--716934	32	2.0	33	87	3	94	28	15	15	40	1.88
719655--719872	108	2.0	108	98	0	418	31	11	15	40	1.84
727272--727310	20	1.9	21	89	5	62	23	17	5	53	1.63
729334--729358	13	1.9	13	100	0	50	32	16	16	36	1.90
729346--729398	20	2.6	21	76	8	56	39	15	15	30	1.87
734055--734079	13	1.9	13	100	0	50	32	16	16	36	1.90
739064--739094	15	2.1	15	93	0	53	48	16	22	12	1.80
741173--741197	13	1.9	13	100	0	50	32	20	16	32	1.94
741306--741351	21	2.2	20	81	11	58	32	19	4	43	1.71
743722--743773	19	2.7	20	87	6	79	42	15	13	28	1.85
745048--745096	20	2.4	20	77	12	55	73	4	16	6	1.19
746675--746704	11	2.7	11	100	0	60	0	10	33	56	1.32
746910--746936	13	2.1	13	100	0	54	40	14	14	29	1.86
746891--746955	33	2.0	32	87	3	94	40	13	16	29	1.88
747806--747843	19	2.0	20	84	5	51	23	18	26	31	1.97
753754--753791	20	1.9	19	94	5	67	26	10	18	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753831--753855	13	1.9	13	100	0	50	36	16	16	32	1.90
753908--753955	19	2.5	19	96	0	87	37	16	12	33	1.86
756647--756699	19	2.7	20	88	2	72	39	16	15	28	1.89
757353--757818	60	7.8	60	74	11	303	25	24	9	40	1.85
757447--757558	30	3.7	30	75	4	100	26	22	8	41	1.83
757509--757783	30	9.2	30	69	17	151	25	24	10	40	1.86
757344--757797	239	1.9	239	81	3	556	25	23	9	40	1.85
757845--757993	60	2.5	60	84	2	192	21	22	12	42	1.87
759054--759520	165	2.8	164	79	6	480	29	11	9	49	1.70
758943--759522	166	3.5	162	76	8	467	30	11	8	49	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13