genome.fa.s98.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958174--958263	31	2.9	31	84	1	117	36	18	11	33	1.87
978943--978991	21	2.2	21	85	10	62	40	10	14	34	1.79
979653--979902	52	4.9	50	75	7	218	33	15	25	25	1.95
979575--979902	101	3.2	101	79	6	297	32	15	25	26	1.95
979831--980264	88	4.9	89	89	2	558	27	19	26	26	1.99
979880--980219	39	8.0	39	74	17	275	26	20	26	27	1.99
980007--980269	48	5.9	47	74	16	261	28	20	25	25	1.99
979831--980264	87	5.0	87	91	0	652	27	19	26	26	1.99
980291--980386	30	3.3	29	81	7	115	17	16	31	34	1.93
980367--980744	34	11.8	33	74	16	296	34	12	31	21	1.90
980361--980743	61	6.1	60	71	19	199	34	12	32	21	1.90
980400--980546	27	5.0	27	74	19	132	31	13	34	21	1.92
980366--980744	94	3.9	93	82	8	456	34	12	31	21	1.90
980558--980749	62	3.0	62	73	14	176	35	10	30	22	1.89
980514--980766	130	2.0	129	85	5	341	35	10	30	22	1.89
980752--980862	31	3.6	30	80	4	132	29	13	29	27	1.94
982049--982078	15	2.1	15	93	6	53	0	0	16	83	0.65
982039--982089	9	5.6	9	84	11	50	0	1	13	84	0.71
982039--982097	17	3.4	17	84	9	66	0	1	15	83	0.74
982051--982103	26	2.0	26	85	7	72	1	3	11	83	0.87
985415--985446	16	2.0	16	93	0	55	31	9	18	40	1.83
987707--987839	51	2.6	51	96	0	239	41	15	15	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987809--987859	20	2.5	20	90	0	75	39	15	11	33	1.84
990029--990054	13	2.0	13	100	0	52	30	15	15	38	1.88
990753--990796	21	2.1	21	83	8	54	25	31	4	38	1.76
992601--992626	13	2.0	13	100	0	52	38	15	15	30	1.88
994697--994732	15	2.3	15	90	4	54	11	19	16	52	1.73
996536--996580	21	2.1	21	84	8	56	22	20	4	53	1.63
998798--998823	13	2.0	13	100	0	52	30	15	15	38	1.88
1003060--1003214	20	7.7	20	70	23	94	26	18	16	39	1.91
1003125--1003194	33	2.1	33	94	0	122	25	20	15	38	1.92
1003147--1003175	13	2.2	13	100	0	58	27	13	17	41	1.87
1003108--1003214	53	2.0	53	83	7	137	27	17	14	40	1.89
1005486--1005803	79	4.1	77	76	10	244	30	24	12	32	1.92
1005486--1005805	156	2.1	152	79	9	344	30	24	12	32	1.92
1009715--1009835	52	2.3	52	92	0	206	28	17	17	36	1.93
1009715--1009855	52	2.7	52	86	6	198	31	16	17	34	1.92
1009844--1009868	13	1.9	13	100	0	50	36	16	16	32	1.90
1009907--1010042	33	4.1	33	96	0	236	36	14	11	36	1.83
1009932--1010022	13	5.9	13	69	30	56	32	15	13	38	1.86
1009945--1010043	20	5.7	20	69	30	100	34	15	12	38	1.84
1010764--1010882	49	2.4	49	95	0	220	34	16	25	23	1.95
1010619--1011098	218	2.2	215	82	7	542	35	16	25	22	1.95
1010965--1012133	49	24.7	49	83	8	1514	30	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010965--1012133	92	12.4	93	91	4	1318	30	18	26	25	1.98
1012154--1013240	34	32.3	36	82	11	932	32	12	34	20	1.90
1012174--1013360	34	35.6	33	81	10	866	33	13	33	20	1.91
1012285--1012338	27	2.0	27	92	0	90	22	14	40	22	1.90
1012306--1013365	34	31.8	33	83	9	950	32	13	33	20	1.91
1012776--1012898	33	4.1	27	80	13	95	30	13	33	22	1.93
1013182--1013427	31	7.9	30	86	5	242	30	16	29	23	1.96
1012776--1013430	125	5.0	126	80	12	334	32	13	31	21	1.93
1013200--1013430	94	2.5	93	85	6	290	30	16	29	23	1.96
1015043--1015083	21	2.0	21	85	9	57	36	21	0	41	1.54
1016574--1016627	20	2.7	20	91	0	90	35	22	14	27	1.93
1016644--1016700	19	2.9	19	86	2	78	31	15	15	36	1.90
1018764--1018792	14	2.0	15	93	6	51	27	0	6	65	1.18
1022097--1022148	21	2.5	21	75	9	54	40	15	15	28	1.88
1022209--1022300	13	8.0	13	64	26	64	39	19	13	28	1.89
1022221--1022321	20	5.8	20	70	29	104	39	20	11	27	1.88
1022191--1022320	33	4.0	33	95	1	226	38	20	13	26	1.91
1024830--1024855	13	2.0	13	100	0	52	38	15	15	30	1.88
1027065--1027109	21	2.1	21	84	8	56	53	4	20	22	1.63
1028915--1028944	15	2.0	15	93	0	51	50	13	23	13	1.77
1038514--1038565	20	2.8	18	91	5	77	34	13	11	40	1.81
1045629--1045832	61	3.3	61	86	3	268	25	27	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045695--1045999	162	1.9	162	88	2	470	26	27	18	28	1.98
1045856--1046120	123	2.2	123	86	2	372	27	27	19	26	1.99
1045857--1046123	61	4.3	61	85	3	331	26	27	19	26	1.99
1046137--1046391	61	4.2	60	81	6	264	26	27	18	27	1.98
1045980--1046277	161	1.8	162	84	3	413	26	27	18	27	1.98
1045634--1046381	285	2.6	284	90	2	1144	26	27	18	28	1.98
1045913--1046352	223	2.0	224	83	3	564	25	27	18	28	1.98
1046141--1046373	123	1.9	123	84	5	310	28	26	17	27	1.98
1049531--1049756	76	2.9	79	79	5	253	28	24	13	32	1.94
1049530--1049728	78	2.6	77	83	4	249	29	23	12	34	1.92
1054778--1054863	44	2.0	44	88	4	129	20	20	13	44	1.86
1054790--1054888	44	2.3	44	80	5	103	21	18	16	44	1.87
1054757--1055000	132	1.8	132	81	6	298	20	21	15	43	1.88
1055126--1055543	44	9.5	44	67	11	178	20	23	16	39	1.92
1054875--1055573	263	2.7	261	82	3	794	21	21	15	40	1.90
1056580--1056887	79	3.9	78	79	5	266	33	14	25	26	1.94
1056824--1056924	51	2.0	51	92	0	166	29	9	28	31	1.89
1059301--1059435	50	2.7	50	87	3	175	40	14	19	25	1.89
1060009--1060088	41	2.0	41	85	5	108	38	12	26	22	1.90
1060068--1060337	41	6.3	41	70	11	150	44	11	24	19	1.83
1060366--1060793	61	7.1	61	80	5	476	28	19	27	25	1.98
1060366--1060793	121	3.5	122	82	4	512	28	19	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060832--1061008	61	2.9	62	85	2	241	27	20	25	25	1.99
1060623--1061138	217	2.4	210	83	4	653	26	19	28	25	1.99
1067453--1067563	44	2.5	44	98	0	213	21	30	14	33	1.93
1067453--1068477	88	11.8	87	71	8	444	21	24	14	38	1.92
1068409--1069212	44	18.3	44	68	11	243	21	21	15	41	1.90
1068623--1069030	88	4.7	86	76	7	313	22	20	15	41	1.89
1070106--1070283	79	2.2	80	81	8	213	35	12	24	26	1.91
1070277--1070380	51	2.0	51	84	0	136	30	11	26	30	1.92
1072743--1072846	20	4.8	20	72	19	73	43	15	14	26	1.85
1072748--1072884	69	2.0	69	89	1	211	44	16	14	24	1.85
1072743--1072896	70	2.2	69	85	1	218	44	16	14	24	1.84
1073467--1073798	41	7.8	41	73	13	125	42	12	24	20	1.87
1073465--1073798	42	7.9	42	75	8	257	41	12	24	20	1.87
1073826--1074252	61	7.1	61	80	5	433	29	18	25	25	1.98
1073827--1074254	121	3.5	122	81	4	469	29	18	26	25	1.98
1074293--1074469	61	2.9	61	83	4	221	27	19	25	26	1.99
1074087--1074599	217	2.4	209	83	5	627	26	18	27	26	1.98
1074417--1074607	94	2.0	95	82	7	231	29	18	27	24	1.98
1075583--1075623	21	2.0	21	95	0	73	9	2	4	82	0.89
1075583--1075634	21	2.5	20	87	9	70	9	1	5	82	0.90
1088030--1088333	79	3.8	78	80	6	308	34	15	24	25	1.94
1090812--1091008	88	2.2	88	82	3	236	19	26	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090936--1091058	44	2.9	43	79	12	119	19	22	16	41	1.90
1091204--1091743	88	6.2	88	74	5	389	21	22	14	40	1.90
1091360--1091505	44	3.3	44	72	1	150	20	27	13	38	1.90
1091466--1091595	44	3.0	44	78	10	149	22	19	14	43	1.87
1091533--1091729	44	4.5	43	71	9	105	22	21	15	39	1.91
1091204--1091750	175	3.1	172	75	9	469	21	22	14	41	1.90
1092463--1092535	20	3.6	20	81	3	101	35	13	19	31	1.91
1092481--1092556	21	3.7	21	80	3	100	42	11	17	28	1.84
1092463--1092556	41	2.3	41	98	0	179	39	12	18	29	1.88
1092595--1092620	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13