genome.fa.s98.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266480--266514	16	2.2	16	94	0	61	22	0	40	37	1.55
267539--267586	25	1.9	25	83	8	62	62	2	2	33	1.18
270458--270595	73	1.9	73	86	3	197	39	8	4	47	1.54
270706--270745	2	21.5	2	80	14	50	52	0	2	45	1.14
270708--270739	16	1.9	17	93	6	57	53	0	3	43	1.16
270884--270932	18	2.8	18	84	3	64	46	2	2	48	1.25
271002--271036	18	1.9	19	88	11	56	42	0	0	57	0.99
279058--279105	22	2.0	25	84	15	66	45	0	6	47	1.27
279141--279242	16	6.3	16	82	1	96	48	4	5	41	1.49
280054--280095	16	2.5	17	84	7	68	47	9	11	30	1.72
281073--281109	5	7.2	5	87	6	56	78	2	18	0	0.87
281941--281970	11	2.7	11	94	0	51	53	0	13	33	1.40
285611--285768	54	3.0	53	82	6	180	31	13	26	28	1.94
287559--287660	34	3.0	34	98	0	195	19	0	39	41	1.52
287552--287682	22	5.9	22	72	22	103	20	0	38	40	1.53
287600--287711	56	2.0	56	98	0	215	20	0	40	39	1.53
292381--292516	34	4.0	34	99	0	263	19	0	38	41	1.52
292483--292538	22	2.5	22	97	0	103	19	0	41	39	1.52
292384--292567	68	2.9	66	89	9	244	20	0	38	40	1.53
295788--295817	16	1.9	15	93	6	51	86	3	10	0	0.67
297734--297784	3	17.0	3	100	0	102	33	0	0	66	0.92
302871--302925	20	2.8	20	97	0	101	32	14	14	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302940--302996	20	2.8	20	89	0	78	43	14	10	31	1.79
304407--304468	32	1.9	32	83	6	81	80	6	8	4	1.01
305189--305751	61	9.0	61	77	8	461	27	24	16	32	1.96
305187--305727	191	2.9	188	83	7	627	27	24	15	32	1.96
305166--305737	126	4.6	124	80	7	559	26	23	16	33	1.96
305640--305927	69	4.3	68	78	7	250	26	23	14	35	1.94
305640--305957	136	2.3	134	80	8	324	24	24	15	35	1.94
307598--307672	37	2.0	37	100	0	150	32	28	21	18	1.97
309281--309311	3	10.3	3	100	0	62	64	0	0	35	0.94
309528--309556	15	2.0	15	93	6	51	75	0	0	24	0.80
312730--312756	4	6.8	4	100	0	54	77	0	0	22	0.76
312838--312876	17	2.2	18	90	4	62	66	0	5	28	1.12
315118--315155	17	2.2	18	85	4	51	2	2	13	81	0.90
316187--316286	20	5.7	19	70	29	89	27	14	15	44	1.84
316187--316317	33	4.0	33	92	1	201	29	13	12	43	1.82
316206--316266	13	5.2	13	74	22	71	27	14	14	42	1.85
318633--318674	20	2.0	21	82	13	52	54	7	14	23	1.64
324913--324977	32	2.0	32	88	8	96	27	12	15	44	1.82
324942--324998	19	2.9	19	86	2	78	31	14	17	36	1.89
325918--325978	31	2.0	31	83	6	79	32	4	21	40	1.74
325929--325998	31	2.3	30	85	7	95	31	8	24	35	1.85
326671--326740	31	2.3	31	87	0	95	32	24	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326671--326759	31	2.9	31	83	1	90	32	23	14	29	1.94
327602--327668	33	2.0	33	88	11	102	34	17	11	35	1.87
327630--327667	20	1.9	20	94	0	67	39	18	10	31	1.85
327622--327647	13	2.0	13	100	0	52	38	15	15	30	1.88
327718--327770	19	2.7	20	88	2	72	39	16	16	26	1.91
328303--328355	19	2.7	18	83	16	61	20	39	3	35	1.71
329667--329699	13	2.5	13	100	0	66	39	15	15	30	1.88
330388--330434	23	2.1	23	96	4	87	42	8	12	36	1.74
330473--330511	20	2.0	19	85	5	51	33	23	0	43	1.54
334992--335090	28	3.6	27	81	10	112	25	19	31	24	1.98
335074--335197	52	2.4	53	86	2	171	31	11	25	31	1.91
337526--337580	20	2.8	20	82	0	74	45	16	14	23	1.84
337600--337667	19	3.9	18	76	23	83	38	14	11	35	1.83
337622--337646	13	1.9	13	100	0	50	32	16	16	36	1.90
337603--337665	32	2.0	32	96	0	117	36	15	12	34	1.86
342546--342639	47	2.0	47	89	0	143	34	15	21	28	1.94
342693--342717	13	1.9	13	100	0	50	32	16	20	32	1.94
342673--342736	32	2.0	32	84	9	85	37	15	18	28	1.92
343105--343143	21	1.9	20	94	5	69	43	15	5	35	1.69
346574--346598	13	1.9	13	100	0	50	36	16	16	32	1.90
346665--346689	13	1.9	13	100	0	50	32	16	16	36	1.90
346698--346818	52	2.3	52	97	0	224	34	18	18	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354108--354132	1	25.0	1	100	0	50	100	0	0	0	0.00
355079--355109	1	31.0	1	100	0	62	100	0	0	0	0.00
355107--355416	32	9.7	32	85	6	272	23	30	15	31	1.95
355107--355416	95	3.2	94	81	8	293	23	30	15	31	1.95
355165--355417	66	3.9	66	82	9	252	22	30	14	32	1.93
355356--355593	88	2.7	88	96	0	433	20	34	14	31	1.92
355516--355705	70	2.7	70	91	4	294	18	33	12	35	1.89
355516--355710	35	5.5	35	85	9	254	17	33	12	36	1.88
355534--355723	105	1.8	104	88	3	292	20	34	11	33	1.89
355712--355803	32	2.8	32	92	7	159	29	35	19	15	1.92
355537--355755	105	2.1	102	82	8	255	21	34	12	30	1.91
355712--355804	33	2.9	32	93	6	161	29	36	19	15	1.92
355816--356719	49	18.5	49	85	6	1187	24	26	17	32	1.97
355820--356719	101	9.2	98	95	2	1233	23	26	17	32	1.97
355816--356719	150	6.2	147	87	5	1178	24	26	17	32	1.97
356357--356719	92	3.9	92	96	1	636	24	25	18	31	1.97
357665--357689	13	1.9	13	100	0	50	36	16	16	32	1.90
357756--357780	13	1.9	13	100	0	50	32	16	16	36	1.90
357789--357909	52	2.3	52	97	0	224	34	18	18	28	1.94
361016--361042	13	2.1	13	100	0	54	29	14	14	40	1.86
361091--361159	33	2.1	33	86	5	95	31	11	18	37	1.87
363355--363397	21	2.1	20	83	12	52	53	6	13	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363355--363397	20	2.1	21	83	12	54	53	6	13	25	1.65
365896--365943	23	2.1	23	100	0	96	39	16	22	20	1.92
368556--368607	22	2.4	22	90	0	77	36	5	34	23	1.79
369228--369292	33	2.0	33	84	6	87	33	13	13	38	1.85
374379--374429	18	2.9	18	83	16	72	68	0	0	31	0.90
374383--374428	16	3.0	16	84	12	53	69	0	0	30	0.89
374527--374605	22	3.5	22	78	10	88	41	3	2	51	1.33
374527--374614	45	2.0	45	93	0	149	43	3	2	51	1.31
374557--374596	18	2.1	20	86	9	57	45	2	2	50	1.28
377950--377990	21	2.0	21	90	0	64	43	7	0	48	1.30
378475--378534	32	1.9	31	83	10	77	53	0	0	46	1.00
378541--378578	16	2.4	16	91	4	60	31	0	0	68	0.90
378844--378880	11	3.4	11	88	0	56	27	0	0	72	0.84
379291--379346	19	2.9	19	81	2	67	32	19	12	35	1.89
379336--379429	42	2.2	42	96	0	170	37	17	19	26	1.93
381560--381613	20	2.8	19	86	5	81	33	12	16	37	1.87
381641--381709	33	2.1	33	86	5	95	28	11	20	39	1.87
388431--388486	28	1.9	28	89	7	85	35	19	23	21	1.96
388520--388596	28	2.8	28	88	4	102	23	18	33	24	1.96
388784--388859	27	2.8	27	88	9	102	21	21	34	23	1.97
388580--388965	52	7.4	51	70	12	219	32	12	24	30	1.92
391322--391347	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391301--391367	33	2.0	33	88	0	98	43	16	14	25	1.86
391387--391454	19	3.9	18	76	23	83	38	14	11	35	1.83
391409--391433	13	1.9	13	100	0	50	32	16	16	36	1.90
391390--391452	32	2.0	32	96	0	117	36	15	12	34	1.86
392263--392556	59	5.0	59	89	4	420	26	21	27	24	1.99
395505--395531	13	2.1	13	100	0	54	29	14	14	40	1.86
404543--405481	28	33.0	28	86	4	1157	28	31	17	22	1.97
404543--405406	57	15.3	56	87	4	1094	28	31	17	22	1.97
405544--405675	49	2.8	46	78	10	140	21	28	18	31	1.96
409952--410004	21	2.7	19	82	5	61	41	15	15	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13