genome.fa.s98.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1209786--1210382	44	13.6	44	69	8	297	21	23	13	40	1.90
1209795--1210412	88	7.0	88	74	6	477	21	24	13	39	1.90
1209788--1211418	176	9.4	174	71	11	660	21	23	14	39	1.90
1210417--1210914	88	5.7	87	78	5	432	21	24	14	38	1.91
1210486--1210901	44	9.5	44	69	7	218	22	25	14	37	1.92
1210491--1210911	175	2.4	176	82	3	483	22	25	14	37	1.92
1210960--1211128	88	1.9	88	85	2	232	26	23	9	41	1.84
1210999--1211491	88	5.6	87	77	7	318	21	21	15	41	1.89
1211132--1212076	44	21.5	43	64	13	210	21	23	14	40	1.90
1211485--1212081	88	6.8	89	78	3	437	21	24	13	39	1.90
1211212--1211798	307	1.9	307	80	4	682	20	21	15	42	1.89
1211745--1212735	424	2.3	424	77	5	1002	22	24	13	39	1.90
1212533--1213265	88	8.3	87	75	6	512	21	24	13	40	1.90
1212534--1213265	44	16.7	44	64	11	160	21	24	13	40	1.90
1212365--1216123	936	4.0	935	94	0	6335	22	24	13	40	1.89
1213225--1213361	73	1.9	73	82	0	175	23	27	10	38	1.87
1213209--1213572	161	2.3	161	79	1	381	22	25	12	39	1.90
1213476--1214201	88	8.3	88	72	7	276	22	23	14	40	1.90
1213530--1214201	44	15.3	44	63	11	144	22	23	13	40	1.90
1213209--1213603	160	2.5	161	78	3	420	23	25	12	38	1.90
1214062--1214226	88	1.9	88	81	7	201	20	24	12	42	1.87
1214416--1214572	44	3.6	43	75	10	138	23	24	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214145--1214548	159	2.5	159	76	8	388	22	25	12	39	1.90
1214404--1215134	88	8.3	88	76	5	514	22	23	12	41	1.88
1214460--1215134	44	15.4	44	66	10	157	21	23	13	41	1.88
1215079--1215446	161	2.3	160	78	5	391	23	23	12	40	1.88
1215397--1215527	44	3.0	43	70	12	122	21	20	14	43	1.87
1215339--1217124	88	20.6	87	70	9	674	22	24	12	40	1.89
1215659--1216071	44	9.4	43	68	11	194	22	23	13	40	1.90
1216352--1216607	44	5.8	44	72	0	179	24	27	10	36	1.89
1215827--1217153	513	2.6	510	80	3	1604	22	24	12	39	1.89
1216776--1217097	44	7.3	44	63	12	124	21	22	15	40	1.91
1217301--1217428	44	2.9	45	77	9	127	24	19	12	43	1.85
1217043--1217448	160	2.5	161	77	8	414	22	26	12	38	1.89
1217593--1218013	176	2.4	177	76	5	413	23	24	12	39	1.89
1217599--1218010	44	9.4	44	66	12	157	23	24	12	39	1.89
1217452--1218042	88	6.7	88	75	3	366	23	24	11	40	1.87
1218044--1218183	44	3.2	43	70	4	100	22	21	13	42	1.87
1218198--1218530	44	7.6	44	68	10	153	22	26	14	36	1.92
1218124--1218544	88	4.8	88	77	4	294	21	26	13	37	1.91
1218559--1219088	88	6.0	88	76	3	384	21	24	13	40	1.90
1218704--1218924	44	5.0	43	70	13	144	19	23	14	42	1.88
1218677--1219088	177	2.3	176	79	2	425	20	24	14	40	1.90
1218804--1219044	44	5.5	44	69	11	107	20	22	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219024--1219124	44	2.3	44	89	0	157	21	29	13	34	1.92
1218936--1219222	132	2.2	131	81	3	308	21	25	13	38	1.91
1219200--1219321	44	2.8	43	78	10	140	21	18	16	44	1.87
1219064--1219513	88	5.1	88	75	3	273	22	21	15	41	1.89
1219836--1220103	87	3.1	88	81	5	231	23	26	12	38	1.90
1219888--1220148	88	3.0	88	78	7	273	21	27	12	38	1.90
1220213--1220630	88	4.8	88	74	6	301	21	24	13	40	1.89
1220396--1221258	44	19.4	43	66	10	167	22	24	12	40	1.89
1219287--1220941	512	3.3	507	79	5	1705	22	23	13	40	1.89
1220643--1221122	88	5.5	88	74	6	328	22	23	12	40	1.89
1220643--1221122	176	2.7	175	74	5	423	22	23	12	40	1.89
1221106--1221722	88	7.0	87	78	5	445	21	25	14	39	1.91
1221093--1221443	44	8.0	42	68	15	142	22	23	14	39	1.91
1221508--1221718	44	4.8	44	67	4	138	21	27	13	38	1.90
1221728--1221911	88	2.1	88	84	0	233	24	21	13	40	1.89
1221945--1222145	44	4.6	44	72	4	172	22	25	12	39	1.90
1221939--1222145	88	2.4	88	90	1	326	22	26	13	38	1.91
1222247--1223326	44	24.5	44	65	9	351	20	23	15	41	1.90
1222175--1222750	88	6.5	88	76	3	408	21	22	14	41	1.89
1222175--1222742	176	3.2	175	76	4	529	20	22	14	41	1.89
1222820--1223062	87	2.8	88	80	2	229	23	21	14	40	1.90
1223349--1224326	88	11.3	86	72	10	349	21	23	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223866--1225142	44	29.0	44	69	9	502	22	22	14	40	1.90
1224586--1224790	87	2.3	88	84	2	252	22	22	15	38	1.92
1225165--1225445	88	3.2	87	77	5	262	21	24	13	40	1.89
1225165--1225481	88	3.6	88	74	9	211	21	24	13	40	1.90
1225693--1226193	44	11.4	43	67	12	225	21	24	13	39	1.90
1225639--1226268	88	7.2	88	80	4	558	21	25	13	39	1.90
1225048--1225933	466	1.9	468	86	1	1249	22	25	12	39	1.89
1225702--1226263	176	3.2	175	80	5	634	21	25	13	39	1.90
1227532--1227980	169	2.7	168	83	3	523	29	9	7	53	1.61
1228745--1228995	35	7.4	35	78	14	230	29	27	11	31	1.92
1228745--1228995	71	3.7	69	81	11	301	29	27	11	31	1.92
1229539--1229563	13	1.9	13	100	0	50	36	16	16	32	1.90
1229521--1229582	32	1.9	33	86	3	90	40	16	16	27	1.89
1229643--1229689	21	2.2	21	84	0	58	42	12	17	27	1.85
1229656--1229697	21	2.0	21	95	0	75	38	11	16	33	1.86
1234866--1235097	36	6.9	35	81	10	270	29	25	11	33	1.91
1234866--1235097	67	3.5	67	89	3	353	29	25	11	33	1.91
1235508--1235604	51	1.9	51	82	4	124	31	14	19	34	1.92
1236056--1236098	19	2.3	18	88	8	59	79	2	18	0	0.85
1236052--1236103	22	2.4	22	87	6	70	78	1	19	0	0.84
1237708--1238177	156	3.0	156	81	7	492	24	15	19	39	1.91
1244213--1244397	48	3.9	49	87	4	236	18	19	18	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244235--1244397	48	3.4	48	89	0	245	18	18	20	42	1.89
1244437--1244599	88	1.9	88	80	7	197	23	22	11	42	1.86
1244834--1245575	88	8.5	87	73	10	349	20	24	14	40	1.90
1245047--1245188	43	3.3	43	97	0	275	22	22	14	40	1.91
1245173--1245274	43	2.3	43	79	1	114	18	29	14	37	1.91
1244911--1245223	86	3.6	86	79	6	346	21	24	14	39	1.91
1244649--1245537	479	1.9	477	81	4	1108	21	24	14	39	1.91
1244475--1245575	44	25.2	43	70	11	276	21	24	14	39	1.90
1246419--1246471	20	2.7	20	88	8	81	43	15	13	28	1.84
1250528--1250559	15	2.1	15	94	0	55	46	15	21	15	1.83
1251924--1251961	13	2.9	13	96	0	67	34	15	15	34	1.90
1253716--1253767	19	2.7	20	87	6	79	42	15	13	28	1.85
1254542--1260823	44	143.5	44	65	10	572	20	23	15	39	1.91
1255110--1255516	219	1.9	218	82	1	510	20	20	16	42	1.88
1255333--1255762	175	2.5	175	80	4	438	20	21	17	40	1.91
1255152--1255570	219	1.9	219	80	2	493	19	20	17	42	1.89
1256315--1257280	350	2.8	348	82	3	1106	20	24	15	39	1.91
1257298--1261181	88	44.3	87	70	10	892	20	23	15	39	1.91
1259804--1260041	129	1.8	130	82	4	311	24	25	13	36	1.92
1260324--1260430	43	2.5	44	82	10	130	22	28	14	35	1.93
1258659--1261180	44	57.5	44	65	14	199	20	23	15	40	1.90
1260762--1261045	132	2.2	132	78	5	297	20	23	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261165--1261211	15	2.8	18	68	18	55	29	46	4	19	1.68
1261314--1261421	44	2.5	44	87	0	153	23	26	17	32	1.97
1261289--1261750	132	3.5	130	77	8	398	20	23	16	39	1.92
1261573--1261676	43	2.4	44	77	3	120	22	25	16	35	1.94
1261635--1261872	88	2.7	88	81	8	263	19	21	16	42	1.90
1262281--1262370	20	4.8	20	75	20	88	30	15	14	40	1.87
1262301--1262353	13	4.5	13	69	26	55	28	15	15	41	1.87
1262281--1262353	33	2.2	33	97	0	137	27	16	15	41	1.88
1264656--1264826	51	3.4	51	76	3	146	31	25	9	33	1.87
1264811--1264884	28	2.7	27	87	8	96	21	27	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13