genome.fa.s98.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1139967--1140264	63	4.6	63	83	10	341	20	35	13	31	1.90
1140264--1140317	27	2.0	27	92	0	90	22	37	14	25	1.93
1140293--1140427	35	3.9	34	80	9	155	18	29	12	39	1.88
1140292--1140434	36	4.1	34	79	7	153	17	31	11	39	1.86
1140298--1140447	71	2.1	70	84	6	187	20	32	12	35	1.89
1140432--1140501	33	2.1	35	94	5	126	25	37	17	20	1.94
1140518--1141117	49	12.3	49	84	2	773	25	26	17	30	1.97
1140496--1141116	98	6.4	98	95	1	1020	25	26	17	30	1.97
1140987--1141055	22	3.2	22	63	19	54	26	26	17	30	1.97
1141031--1141179	52	2.8	54	80	3	176	26	23	16	34	1.95
1141196--1141299	49	2.1	49	85	0	136	25	22	16	36	1.94
1141031--1141425	171	2.3	171	94	1	691	24	24	14	36	1.92
1142145--1142211	33	2.0	33	88	0	98	34	11	13	40	1.81
1142165--1142189	13	1.9	13	100	0	50	36	16	16	32	1.90
1142254--1142278	13	1.9	13	100	0	50	32	16	16	36	1.90
1142287--1142407	52	2.3	52	97	0	224	34	18	18	28	1.94
1151479--1151519	21	2.0	21	90	9	66	39	9	9	41	1.71
1151599--1151734	53	2.6	53	97	0	254	36	18	17	27	1.94
1152049--1152087	18	2.2	18	100	0	78	46	17	5	30	1.70
1152320--1152386	37	1.9	35	88	11	102	32	11	25	29	1.92
1153479--1153520	21	2.0	21	85	0	57	42	4	28	23	1.74
1156325--1156417	48	1.9	48	100	0	186	32	11	13	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156898--1157013	56	2.1	57	98	1	225	29	12	27	31	1.92
1157406--1157475	20	3.6	19	77	9	70	38	17	14	30	1.89
1157498--1157581	19	4.6	19	65	21	54	36	16	15	30	1.90
1157446--1157581	53	2.6	53	91	0	227	36	17	16	29	1.92
1171123--1171689	28	19.9	28	83	7	614	27	30	18	23	1.98
1171123--1171689	84	6.6	85	86	4	714	27	30	18	23	1.98
1171123--1171690	56	9.9	57	85	5	695	27	30	18	23	1.98
1174796--1175030	44	5.4	44	68	13	144	22	24	16	36	1.94
1174796--1175725	88	10.8	88	69	10	291	21	24	14	39	1.91
1175260--1175671	44	9.4	44	67	14	170	20	23	15	39	1.91
1175520--1175720	44	4.6	44	73	9	144	23	22	13	39	1.91
1175263--1175750	44	11.1	44	64	11	142	20	22	15	40	1.90
1175819--1176051	44	5.3	44	84	4	281	19	26	16	38	1.92
1175819--1176096	88	3.2	88	82	6	262	19	25	16	39	1.92
1176082--1176194	46	2.5	45	77	9	115	25	25	10	38	1.88
1176658--1176942	44	6.5	44	67	10	163	21	24	16	37	1.93
1176658--1176856	88	2.3	87	80	10	217	20	25	16	37	1.93
1177083--1177200	44	2.7	44	72	15	109	23	24	12	38	1.90
1177057--1177453	88	4.5	88	75	7	299	23	22	13	40	1.90
1177387--1177558	88	2.0	87	80	7	197	21	26	13	38	1.90
1177055--1177790	176	4.3	172	71	13	478	22	23	14	39	1.90
1177569--1177781	87	2.4	88	77	8	211	21	23	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178015--1179166	88	13.1	88	71	7	577	23	24	13	38	1.91
1178499--1179166	44	15.2	43	66	11	181	23	24	12	39	1.90
1179227--1179414	44	4.3	44	77	9	177	20	25	17	37	1.93
1179271--1179474	88	2.3	88	81	6	227	20	23	18	37	1.94
1179063--1180140	422	2.5	420	79	7	1066	22	24	14	38	1.91
1179631--1179797	87	1.9	87	81	4	203	21	23	14	40	1.90
1179627--1179839	87	2.4	88	77	8	202	21	23	14	40	1.90
1180090--1180182	44	2.1	44	83	0	114	27	23	8	39	1.84
1180073--1181224	88	13.1	88	72	6	575	23	24	13	38	1.90
1180204--1180362	44	3.6	44	67	15	114	23	22	14	39	1.91
1180730--1180969	44	5.5	42	67	15	119	20	25	14	39	1.90
1181285--1181472	44	4.3	44	76	9	168	20	26	17	36	1.94
1181285--1181532	88	2.8	88	80	6	236	20	24	17	37	1.94
1181121--1182207	422	2.6	421	79	6	1082	22	24	14	38	1.92
1181689--1181855	87	1.9	87	81	4	203	21	23	14	40	1.90
1181685--1181897	87	2.4	88	77	8	202	21	23	14	40	1.90
1182179--1183282	88	12.6	88	72	7	585	23	24	13	39	1.90
1182262--1182420	44	3.6	44	67	15	114	23	22	14	39	1.91
1183343--1183530	44	4.3	44	76	9	168	20	26	17	36	1.94
1183343--1183590	88	2.8	88	80	6	236	20	24	17	37	1.94
1183179--1184265	422	2.6	421	79	6	1082	22	24	14	38	1.92
1183747--1183913	87	1.9	87	81	4	203	21	23	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183743--1183955	87	2.4	88	77	8	202	21	23	14	40	1.90
1184237--1185340	88	12.6	88	72	6	592	23	24	13	39	1.90
1184320--1184478	44	3.6	44	67	15	114	23	22	14	39	1.91
1184846--1185085	44	5.5	42	67	15	119	20	25	14	39	1.90
1185401--1185588	44	4.3	44	76	9	168	20	26	17	36	1.94
1185401--1185648	88	2.8	88	80	6	236	20	24	17	37	1.94
1185237--1186323	422	2.6	421	79	6	1100	22	24	14	38	1.92
1185805--1185971	87	1.9	87	81	4	203	21	23	14	40	1.90
1185801--1186013	87	2.4	88	77	8	202	21	23	14	40	1.90
1186247--1187398	88	13.1	88	72	7	586	23	24	13	38	1.90
1186378--1186536	44	3.6	44	67	15	114	23	22	14	39	1.91
1187459--1187572	44	2.6	44	90	0	174	21	26	16	35	1.95
1187503--1187706	88	2.3	88	80	6	218	20	23	18	37	1.94
1187884--1188001	44	2.7	44	72	15	109	23	23	12	39	1.89
1187858--1188254	88	4.5	89	75	7	328	23	22	13	40	1.89
1187858--1188591	176	4.3	175	72	14	450	22	23	13	40	1.90
1188188--1188359	88	2.0	87	80	7	197	21	26	13	38	1.90
1188814--1189001	44	4.3	44	78	9	186	20	26	17	36	1.94
1188858--1189055	88	2.2	88	80	7	215	20	24	17	36	1.94
1189123--1189175	26	2.0	26	96	0	97	16	26	16	39	1.91
1189352--1189691	44	7.7	44	68	10	144	22	20	14	42	1.88
1189247--1189587	88	3.9	87	74	6	258	23	21	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189330--1189664	176	1.9	176	84	6	455	22	20	13	43	1.87
1189316--1189700	176	2.2	173	82	7	454	22	20	14	42	1.88
1190248--1190351	44	2.4	44	85	0	145	19	23	15	42	1.89
1193641--1193665	13	1.9	13	100	0	50	32	16	20	32	1.94
1193713--1193745	13	2.5	13	100	0	66	33	18	15	33	1.92
1194557--1195661	52	22.7	51	75	11	807	32	18	25	23	1.97
1194557--1195672	101	11.5	100	84	6	1237	32	18	25	23	1.97
1195058--1195602	43	11.8	43	71	16	342	31	20	24	23	1.98
1195105--1195659	182	3.0	182	89	2	840	30	19	25	24	1.98
1195727--1195984	33	7.7	33	72	9	166	34	12	30	22	1.91
1195936--1196016	31	2.6	32	86	9	114	33	12	27	27	1.92
1195748--1195984	101	2.4	101	86	3	327	36	11	30	21	1.89
1197295--1197332	13	2.9	13	84	7	51	0	0	18	81	0.69
1197304--1197333	15	2.0	15	93	0	51	0	0	16	83	0.65
1197295--1197333	14	2.9	13	85	14	53	0	0	17	82	0.68
1200459--1200525	37	1.9	35	88	11	102	29	25	11	32	1.92
1201004--1201029	13	2.0	13	100	0	52	30	23	15	30	1.95
1201040--1201125	31	2.6	33	80	7	95	39	8	22	30	1.83
1201092--1201168	22	3.5	22	89	3	120	40	7	23	28	1.82
1201263--1201333	20	3.5	21	79	7	76	30	12	16	39	1.86
1201373--1201413	21	2.0	21	85	9	57	39	9	12	39	1.76
1205664--1205718	20	2.8	20	94	0	92	38	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1205819--1205870	19	2.7	19	82	5	61	38	13	13	34	1.84
1206518--1206779	88	3.0	87	78	5	287	20	20	15	43	1.87
1206955--1207813	44	19.7	44	67	11	298	21	23	14	40	1.91
1207320--1209552	176	12.8	175	71	8	1074	21	24	14	39	1.90
1207324--1209552	264	8.5	262	73	7	1091	21	24	14	39	1.90
1207320--1208795	88	16.8	88	73	6	602	22	24	14	39	1.91
1208583--1208814	44	5.3	44	72	2	187	20	28	13	37	1.91
1208887--1209552	88	7.6	89	71	7	333	21	23	13	41	1.89
1209413--1209552	44	3.2	44	70	11	115	20	18	16	45	1.86
1209554--1209726	88	2.0	87	82	3	213	24	26	10	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13