genome.fa.s98.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold98
Parameters: 2 7 7 80 10 50 1000
Length:  1546936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096682--1096712	15	2.1	15	93	0	53	48	16	22	12	1.80
1098726--1098804	20	3.7	21	75	15	72	26	13	15	44	1.84
1098791--1098829	13	3.0	13	96	0	69	30	17	15	35	1.91
1101269--1101341	20	3.6	20	81	3	101	35	13	19	31	1.91
1101287--1101362	21	3.7	21	80	3	100	42	11	17	28	1.84
1101269--1101362	41	2.3	41	98	0	179	39	12	18	29	1.88
1101401--1101426	13	2.0	13	100	0	52	38	15	15	30	1.88
1102183--1103062	88	10.1	89	74	9	555	21	23	15	40	1.91
1102315--1102438	43	2.9	43	75	3	133	20	27	13	37	1.91
1102185--1103068	176	5.1	176	77	6	815	21	23	14	40	1.90
1102183--1103428	44	28.6	43	64	13	160	21	23	15	39	1.91
1103135--1103722	88	6.7	87	75	9	426	23	23	14	39	1.90
1102985--1103242	132	2.0	132	79	6	281	22	24	13	39	1.90
1103100--1104115	176	5.9	175	71	12	584	22	24	14	39	1.91
1103316--1103472	44	3.6	43	73	17	126	23	20	14	41	1.89
1103361--1103513	44	3.5	42	72	18	125	22	22	15	39	1.91
1103489--1103619	44	3.0	44	70	10	117	22	24	12	41	1.88
1103756--1103982	88	2.6	87	83	3	285	22	23	14	39	1.91
1104050--1104141	44	2.1	44	87	0	130	18	32	18	30	1.95
1104094--1104284	89	2.2	88	79	10	203	19	26	17	36	1.94
1104561--1105363	44	18.3	44	64	12	143	21	22	15	40	1.90
1104948--1105447	88	5.7	88	73	5	330	20	22	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104825--1105064	132	1.8	131	82	4	313	22	20	15	42	1.89
1104817--1105095	132	2.1	131	78	4	294	21	19	16	43	1.88
1104956--1105482	176	3.0	176	75	4	490	20	22	15	41	1.89
1105863--1106018	44	3.5	45	75	8	151	24	25	14	35	1.93
1105986--1106139	81	1.9	81	83	2	202	25	24	14	36	1.93
1106118--1106230	44	2.6	42	75	13	104	25	23	13	37	1.91
1106303--1106697	44	9.0	44	65	14	156	21	24	15	38	1.92
1106300--1107481	88	13.6	86	68	9	420	21	24	14	39	1.91
1106808--1107134	44	7.5	44	67	8	164	21	26	14	38	1.91
1107540--1108879	44	30.4	44	65	13	249	21	25	15	38	1.91
1107580--1109692	88	24.2	88	70	10	719	21	24	14	39	1.91
1108353--1108929	221	2.6	220	84	4	689	20	24	14	40	1.90
1108546--1108741	89	2.2	88	82	4	234	21	26	15	36	1.93
1108587--1108830	133	1.8	132	84	4	330	20	26	15	37	1.92
1109018--1110007	44	22.5	44	67	13	184	21	24	15	39	1.91
1109551--1109824	132	2.1	131	79	8	288	20	23	16	39	1.92
1109631--1109868	132	1.8	132	80	7	286	20	24	16	37	1.93
1109679--1110466	176	4.5	175	79	5	680	20	25	15	38	1.92
1108980--1110229	44	28.5	43	66	12	159	21	24	14	39	1.91
1110297--1110446	44	3.4	43	72	7	122	20	24	16	38	1.92
1109679--1110525	88	9.6	88	74	5	514	21	25	15	38	1.92
1110565--1110785	88	2.5	87	77	4	192	21	24	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1110852--1110948	44	2.2	44	92	0	158	23	30	8	37	1.84
1111021--1112685	44	37.6	44	63	9	184	21	24	15	39	1.91
1111023--1111247	90	2.5	89	77	7	204	20	23	15	40	1.90
1111622--1111797	93	1.9	93	95	0	316	22	23	14	39	1.91
1111622--1111763	49	3.0	49	65	14	134	24	21	14	39	1.91
1111446--1112420	88	11.0	87	73	6	437	21	23	15	39	1.91
1112436--1112722	88	3.2	88	77	7	278	21	24	14	39	1.91
1112467--1112722	89	2.9	87	78	6	282	21	24	12	40	1.89
1112467--1112794	177	1.9	177	79	2	372	23	24	12	39	1.89
1112641--1112936	159	1.9	161	80	5	359	25	21	11	40	1.87
1112552--1113018	247	1.9	250	78	7	522	25	22	12	39	1.89
1112828--1113551	88	8.3	89	71	6	341	23	23	14	38	1.91
1113312--1113462	44	3.5	44	76	4	144	21	24	15	37	1.93
1113752--1114047	159	1.9	161	81	2	373	23	21	13	40	1.89
1113913--1114320	88	4.7	85	77	5	303	21	24	14	39	1.90
1113913--1114384	87	5.4	85	76	6	372	22	23	14	39	1.91
1113913--1114407	175	2.8	171	78	6	490	21	23	14	39	1.91
1114327--1114617	44	6.6	43	69	14	157	23	22	15	38	1.92
1114415--1114636	88	2.5	88	80	3	248	22	23	13	39	1.90
1114706--1114814	44	2.5	44	74	5	105	22	26	14	35	1.93
1114932--1115127	44	4.5	44	74	7	139	20	29	14	35	1.93
1114976--1115365	88	4.5	87	75	7	308	20	26	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115438--1115682	44	5.6	44	71	8	212	21	22	15	40	1.91
1115400--1115686	88	3.3	86	82	6	335	21	24	14	39	1.91
1115462--1115934	249	1.9	248	81	3	565	22	22	13	41	1.88
1115737--1115855	44	2.7	46	79	10	131	21	22	12	42	1.87
1115547--1115838	161	1.8	160	82	5	383	22	22	13	41	1.88
1115400--1116531	424	2.7	417	80	6	1283	21	23	14	40	1.90
1115713--1116017	88	3.5	87	74	9	273	21	22	13	41	1.88
1116199--1117833	88	18.8	88	69	12	464	22	23	14	39	1.90
1116509--1116829	44	7.3	44	72	9	172	21	26	14	37	1.92
1116378--1116971	221	2.7	214	75	9	538	22	24	14	38	1.92
1117280--1117831	44	12.5	44	69	8	171	23	23	13	39	1.90
1117972--1118081	44	2.5	44	87	0	166	23	28	14	33	1.94
1118303--1118402	44	2.2	45	94	1	175	24	29	14	33	1.94
1118392--1118637	44	5.6	44	67	5	111	23	21	13	41	1.89
1118663--1118839	88	2.0	88	87	2	257	20	23	15	41	1.90
1118692--1118883	44	4.4	44	76	7	174	19	27	14	38	1.91
1118692--1118945	132	1.9	132	82	4	316	18	25	14	40	1.89
1119081--1119270	44	4.3	44	75	4	141	20	25	17	37	1.94
1119173--1119526	88	4.0	88	74	6	304	22	24	14	38	1.91
1119249--1119452	87	2.3	88	80	5	225	22	24	14	39	1.90
1119283--1119752	248	1.9	248	81	3	579	21	23	12	41	1.88
1119530--1119881	88	4.0	89	76	10	307	21	24	12	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119779--1120023	132	1.9	130	82	5	305	22	26	11	40	1.87
1119857--1120319	88	5.3	89	75	7	309	20	23	15	40	1.91
1119603--1120150	44	12.5	43	70	11	139	20	23	14	41	1.89
1120211--1120319	44	2.5	44	83	5	141	20	26	15	37	1.92
1119859--1120270	176	2.3	176	76	3	436	21	23	15	40	1.90
1119611--1120367	308	2.5	305	81	5	839	21	23	14	40	1.90
1120975--1121426	176	2.6	176	75	6	407	22	24	13	39	1.90
1120976--1121447	88	5.4	89	73	7	351	22	25	13	39	1.90
1121477--1121582	44	2.4	44	88	0	149	20	29	15	34	1.93
1121523--1121761	88	2.7	88	77	7	200	21	25	15	37	1.93
1121477--1121761	44	6.5	44	70	10	143	22	25	14	37	1.93
1121693--1121792	44	2.3	44	78	3	103	25	27	12	36	1.91
1121961--1122209	88	2.8	88	71	5	227	26	22	12	38	1.89
1122415--1122646	44	5.3	43	71	11	134	21	26	15	36	1.93
1122415--1122645	88	2.6	89	79	9	251	21	26	15	36	1.93
1122535--1122697	88	1.9	88	80	0	191	22	22	17	38	1.93
1122784--1123094	88	3.5	88	76	5	272	22	22	12	42	1.87
1123154--1123418	88	3.0	88	78	7	227	21	24	14	38	1.91
1123180--1123420	44	5.5	44	72	11	129	22	25	14	37	1.92
1123262--1123457	44	4.5	44	75	11	127	22	27	13	37	1.91
1124083--1124159	20	3.8	20	84	0	100	32	15	11	40	1.84
1131291--1131357	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131311--1131335	13	1.9	13	100	0	50	36	16	16	32	1.90
1131400--1131424	13	1.9	13	100	0	50	32	16	16	36	1.90
1131433--1131553	52	2.3	52	97	0	224	34	18	18	28	1.94
1138784--1138826	9	4.6	9	88	5	59	88	0	9	2	0.60
1139768--1140388	61	9.8	62	74	16	410	20	35	13	30	1.92
1139794--1140290	125	3.9	125	84	8	551	21	36	13	28	1.92
1139916--1139994	27	2.9	27	98	0	149	24	40	17	17	1.91
1139759--1140427	34	20.9	33	78	14	447	20	34	13	31	1.91
1139943--1140261	98	3.3	96	81	13	368	20	35	13	29	1.92
1139943--1140395	97	4.7	97	81	10	395	20	34	13	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13