genome.fa.s7.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  14  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5603658--5603683	13	2.0	13	100	0	52	0	0	23	76	0.78
5607377--5607408	11	2.9	11	90	0	55	46	3	18	31	1.65
5621181--5621205	2	12.5	2	100	0	50	48	0	0	52	1.00
5635148--5635207	2	30.0	2	86	6	86	3	48	0	48	1.18
5656063--5656112	10	5.4	10	80	9	54	46	0	0	54	1.00
5656065--5656110	8	6.2	8	82	14	55	45	0	0	54	0.99
5656161--5656194	17	2.0	17	94	0	59	55	2	0	41	1.15
5690633--5690704	29	2.4	29	77	11	83	55	12	16	15	1.69
5690901--5690978	35	2.2	35	83	0	93	20	8	19	51	1.73
5698432--5698463	2	16.0	2	93	0	55	46	0	0	53	1.00
5698883--5698924	21	2.0	21	85	0	57	19	28	23	28	1.98
5700968--5700996	2	14.5	2	100	0	58	51	0	0	48	1.00
5701229--5701504	131	2.0	135	91	5	443	32	20	10	36	1.86
5704230--5704254	8	3.1	8	100	0	50	52	12	0	36	1.39
5708873--5708903	15	2.1	15	100	0	62	32	6	25	35	1.82
5712907--5712942	2	18.0	2	100	0	72	50	0	50	0	1.00
5723176--5723212	19	2.0	18	89	5	56	70	0	27	2	1.01
5735280--5735324	22	2.1	23	84	12	60	31	2	8	57	1.41
5737366--5737441	9	8.4	9	79	5	82	38	31	17	13	1.88
5737366--5737441	18	4.2	18	84	3	91	38	31	17	13	1.88
5737366--5737436	27	2.6	27	95	0	124	38	30	16	14	1.89
5739098--5739127	15	2.1	15	93	6	53	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5741117--5741146	12	2.5	12	100	0	60	26	66	0	6	1.16
5742423--5742449	2	13.5	2	100	0	54	51	0	48	0	1.00
5749616--5749640	12	2.1	12	100	0	50	24	0	8	68	1.16
5751144--5751174	15	2.1	15	93	0	53	48	0	0	51	1.00
5758736--5758765	2	15.0	2	100	0	60	50	0	0	50	1.00
5764617--5764767	81	1.9	80	85	1	212	27	9	23	39	1.86
5772910--5772941	2	16.0	2	100	0	64	50	0	0	50	1.00
5774457--5774515	27	2.2	27	84	6	75	3	16	1	77	0.98
5774461--5774512	26	2.1	26	85	7	72	3	15	1	78	0.98
5774464--5774515	12	4.0	13	78	14	54	3	15	1	78	0.98
5774698--5774772	36	2.1	36	89	0	114	53	1	4	41	1.28
5794548--5794578	2	15.5	2	100	0	62	0	48	0	51	1.00
5799539--5799583	21	2.1	21	91	0	72	22	17	11	48	1.78
5799674--5799745	37	1.9	38	83	13	96	15	19	22	43	1.88
5808427--5808456	2	15.0	2	92	0	51	46	0	0	53	1.00
5813628--5813653	6	4.3	6	100	0	52	34	19	30	15	1.93
5826073--5826108	12	3.2	12	81	18	51	55	0	0	44	0.99
5841487--5841550	32	2.0	32	96	0	119	28	28	14	29	1.95
5845992--5846046	18	3.1	18	65	19	51	49	9	18	23	1.76
5851590--5851616	4	6.8	4	100	0	54	48	0	0	51	1.00
5856825--5856859	2	17.5	2	100	0	70	51	0	0	48	1.00
5858240--5858283	19	2.4	18	82	14	54	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5866035--5866068	12	2.8	12	90	0	50	8	17	44	29	1.79
5866041--5866115	24	3.1	24	73	7	71	8	20	44	28	1.79
5886779--5886881	50	2.1	50	94	0	179	29	31	18	21	1.97
5887505--5887634	65	2.0	65	93	3	226	45	16	19	18	1.86
5892228--5892294	36	1.9	35	84	6	91	32	11	13	41	1.81
5901220--5901295	36	2.2	34	83	6	98	40	3	5	50	1.44
5901220--5901302	18	4.7	18	78	8	82	40	6	6	46	1.53
5901988--5902198	27	7.7	27	75	8	151	40	8	10	40	1.69
5901988--5902198	54	3.9	55	79	2	228	40	8	10	40	1.69
5902178--5902220	22	2.0	22	90	0	68	39	4	13	41	1.66
5903309--5903352	17	2.6	17	100	0	88	56	0	25	18	1.41
5903299--5903352	17	2.8	20	81	18	78	55	0	24	20	1.43
5913451--5913484	18	1.9	17	88	5	50	61	0	23	14	1.33
5925445--5925488	16	2.5	19	89	10	67	52	0	0	47	1.00
5925602--5925646	23	2.1	23	84	15	62	57	0	0	42	0.98
5925895--5925930	18	2.1	17	89	5	54	75	0	0	25	0.81
5926846--5926880	2	17.5	2	100	0	70	48	0	0	51	1.00
5943408--5943439	2	16.0	2	100	0	64	50	0	0	50	1.00
5943961--5944003	22	2.0	22	85	0	59	32	6	11	48	1.66
5943993--5944052	23	2.7	22	84	2	66	25	11	26	36	1.90
5944016--5944094	23	3.5	23	79	5	81	26	11	27	34	1.91
5944148--5944214	22	3.0	22	82	0	80	44	11	8	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5946881--5947085	107	1.9	108	89	3	324	39	11	12	36	1.79
5955726--5955751	11	2.4	11	100	0	52	46	7	7	38	1.61
5957649--5957695	22	2.1	22	92	0	76	38	21	27	12	1.90
5962321--5962372	27	1.9	27	96	0	95	44	5	7	42	1.57
5963531--5963569	2	19.5	2	100	0	78	51	0	0	48	1.00
5964934--5964963	4	7.5	4	100	0	60	50	23	26	0	1.50
5965107--5965139	13	2.5	13	95	5	57	21	36	6	36	1.78
5981045--5981119	2	39.0	2	89	7	120	0	46	0	53	1.00
5996964--5997001	10	3.7	10	86	6	58	71	0	0	28	0.87
5996949--5997001	10	5.0	10	78	13	52	69	0	0	30	0.88
5996963--5997001	21	1.9	20	94	5	69	71	0	0	28	0.86
5996986--5997043	29	2.0	28	83	9	73	55	0	0	44	0.99
6006763--6006797	17	2.1	17	88	0	52	54	2	8	34	1.46
6007015--6007055	20	2.0	21	85	9	57	56	0	0	43	0.99
6007397--6007570	44	4.0	45	78	3	185	38	14	15	31	1.87
6007458--6007567	42	2.5	42	85	4	121	41	14	13	30	1.84
6007390--6007554	89	1.9	87	81	5	197	38	12	15	32	1.86
6008140--6008190	20	2.4	21	80	12	59	60	0	1	37	1.08
6008540--6008703	45	3.6	45	73	6	143	37	14	17	31	1.90
6009276--6009323	21	2.2	23	85	7	64	52	0	2	45	1.12
6009676--6009800	45	2.8	45	86	2	144	36	16	16	30	1.91
6009818--6009908	45	2.0	45	82	0	110	38	13	15	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6013288--6013339	26	2.0	25	88	3	77	63	1	1	32	1.16
6013354--6013463	42	2.6	42	81	9	134	50	0	5	42	1.31
6013463--6013521	27	2.1	28	87	3	84	52	0	1	45	1.10
6013463--6013528	27	2.4	27	85	5	71	54	0	1	43	1.09
6013327--6013806	188	2.5	189	79	9	481	54	3	3	39	1.34
6013496--6013763	62	4.2	64	71	16	227	57	3	1	37	1.24
6013815--6013857	21	2.1	20	86	4	59	53	0	2	44	1.13
6014517--6014558	19	2.2	20	86	4	59	47	0	0	52	1.00
6014854--6014906	16	3.5	15	75	15	56	33	9	1	54	1.43
6024662--6024700	20	2.0	20	94	0	69	46	10	2	41	1.51
6032838--6032876	20	2.0	20	84	0	51	43	5	5	46	1.48
6034082--6034139	26	2.3	26	82	5	75	55	0	0	44	0.99
6034426--6034467	21	2.0	21	86	4	59	61	0	0	38	0.96
6034481--6034566	23	3.7	24	72	23	69	45	0	3	51	1.18
6034587--6034631	15	2.8	17	80	12	51	55	2	0	42	1.12
6036961--6036990	12	2.5	12	94	0	51	3	3	50	43	1.35
6036979--6037036	30	1.9	30	96	0	107	8	10	53	27	1.64
6055175--6055255	41	2.0	42	82	2	101	46	17	12	23	1.81
6070980--6071019	20	2.0	21	85	5	55	17	12	2	67	1.33
6078788--6078823	15	2.3	16	90	4	56	38	8	11	41	1.71
6081851--6081953	52	2.0	52	84	3	136	34	7	19	37	1.81
6082078--6082149	22	3.3	22	78	7	83	23	6	19	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6082078--6082167	44	2.0	44	84	0	117	24	6	22	46	1.75
6082093--6082213	22	5.5	22	74	4	91	28	8	20	42	1.81
6082196--6082394	101	2.0	101	94	0	353	33	9	21	35	1.85
6082391--6082441	22	2.4	22	86	3	68	56	13	3	25	1.54
6082390--6082461	22	3.3	22	80	7	67	51	12	6	29	1.65
6082474--6082521	22	2.1	22	84	3	60	47	8	6	37	1.59
6085151--6085181	3	10.3	3	92	0	53	32	0	3	64	1.09
6087174--6087227	2	27.0	2	84	0	63	1	50	7	40	1.41
6087565--6087593	7	4.1	7	100	0	58	31	27	13	27	1.94
6098261--6098313	14	3.8	13	75	9	52	43	5	5	45	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20