genome.fa.s7.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  16  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6905159--6905298	42	3.4	42	81	3	124	49	5	2	42	1.39
6905192--6905302	42	2.7	41	86	6	147	52	2	3	41	1.33
6905192--6905321	41	3.2	39	81	13	129	50	3	3	43	1.33
6905307--6905357	25	1.9	28	84	11	72	52	0	0	47	1.00
6905413--6905476	26	2.5	26	84	5	85	53	1	1	43	1.19
6905397--6905663	139	1.9	140	81	9	321	54	4	0	40	1.25
6905550--6905605	27	2.1	27	86	0	76	53	1	0	44	1.11
6905571--6905611	19	2.2	19	86	0	55	60	0	0	39	0.96
6905605--6905666	26	2.2	28	86	8	83	53	1	1	43	1.20
6905561--6905667	26	4.3	25	71	19	82	56	0	0	42	1.12
6905628--6905702	37	2.0	38	82	10	91	62	0	1	36	1.04
6905821--6905868	5	9.2	5	82	8	60	25	0	0	75	0.81
6905810--6905863	26	2.1	26	96	0	99	31	0	0	68	0.90
6906317--6906377	29	2.1	30	84	9	81	37	4	3	54	1.39
6906507--6906536	14	2.1	14	100	0	60	36	13	6	43	1.70
6907208--6907263	17	3.4	17	81	13	64	48	0	1	50	1.11
6907217--6907263	15	2.9	16	85	14	62	48	0	0	51	1.00
6909647--6909716	22	3.1	22	71	20	56	37	0	0	62	0.95
6909646--6909698	26	2.0	26	88	0	79	32	0	0	67	0.91
6909674--6909716	21	2.0	21	82	8	52	39	0	0	60	0.97
6911582--6911611	4	7.5	4	100	0	60	0	26	0	73	0.84
6920430--6920467	15	2.5	15	91	0	58	31	2	31	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946250--6946346	48	2.0	48	93	0	167	27	17	21	32	1.96
7008246--7008273	2	14.0	2	100	0	56	50	0	0	50	1.00
7012733--7012812	29	2.9	27	75	8	90	67	1	21	10	1.27
7019016--7019053	14	2.7	15	92	8	62	52	0	2	44	1.14
7028600--7028741	71	2.0	68	95	4	257	26	15	15	42	1.87
7041768--7041839	26	2.7	23	76	23	63	48	2	2	45	1.31
7052960--7052998	18	2.1	19	90	4	62	46	0	2	51	1.14
7055783--7055816	17	2.1	16	88	5	50	82	0	14	2	0.79
7056454--7056490	18	2.1	18	89	0	56	21	5	0	72	1.04
7056530--7056582	25	2.1	25	82	0	61	22	15	18	43	1.87
7058516--7058572	22	2.5	24	80	8	73	36	0	1	61	1.07
7058498--7058612	21	5.4	22	70	17	73	41	0	0	57	1.05
7058934--7058972	18	2.1	19	86	13	55	69	7	23	0	1.14
7069864--7069972	42	2.6	42	81	8	123	32	31	17	19	1.95
7069880--7069973	42	2.2	42	86	3	127	31	30	17	20	1.95
7069898--7070100	42	4.8	42	74	8	130	27	32	14	25	1.94
7086271--7086306	18	2.0	18	100	0	72	55	16	16	11	1.68
7098541--7101168	658	4.0	657	81	6	2695	38	18	10	32	1.85
7131535--7131614	30	2.7	29	74	3	70	61	0	5	33	1.18
7136609--7136672	28	2.3	28	94	0	110	35	32	9	21	1.86
7146739--7146785	21	2.1	24	84	11	64	42	2	10	44	1.51
7148324--7148374	10	5.0	10	81	9	50	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7150436--7150473	17	2.2	18	85	4	51	36	2	5	55	1.37
7158072--7158102	15	2.1	15	93	0	53	45	19	12	22	1.84
7166689--7166734	24	1.9	24	82	8	58	36	0	2	60	1.09
7173206--7173236	2	15.5	2	100	0	62	0	48	0	51	1.00
7180095--7180119	2	12.5	2	100	0	50	52	0	48	0	1.00
7180616--7180649	2	17.0	2	100	0	68	0	50	0	50	1.00
7181985--7182009	12	2.1	12	100	0	50	0	0	12	88	0.53
7185468--7185858	92	4.1	91	73	10	266	38	11	12	37	1.79
7185658--7185850	100	1.9	100	85	4	264	35	10	15	38	1.82
7199409--7199477	30	2.3	30	92	0	111	14	24	21	39	1.91
7213720--7213760	18	2.3	18	91	0	64	29	24	9	36	1.87
7213785--7213815	9	3.4	9	90	0	53	25	29	0	45	1.54
7223517--7223554	19	2.0	19	85	10	51	52	7	7	31	1.59
7224698--7224727	15	2.0	15	93	0	51	43	13	30	13	1.82
7256736--7256762	2	13.5	2	100	0	54	0	51	0	48	1.00
7256762--7256793	2	16.0	2	100	0	64	50	50	0	0	1.00
7277931--7277956	2	13.0	2	100	0	52	0	0	50	50	1.00
7277956--7277987	2	16.5	2	93	6	57	46	0	53	0	1.00
7286086--7286522	217	2.0	217	96	0	811	27	26	17	28	1.98
7289727--7289916	69	2.7	69	86	1	245	25	9	25	40	1.85
7294867--7294906	19	2.2	19	90	4	64	27	10	22	40	1.86
7295870--7295897	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7298883--7298918	18	2.0	18	94	0	63	19	27	8	44	1.79
7299111--7299135	2	12.5	2	100	0	50	0	48	0	52	1.00
7304393--7304422	2	15.5	2	93	6	53	50	0	0	50	1.00
7306397--7306421	2	12.5	2	100	0	50	52	0	0	48	1.00
7332606--7332633	2	14.0	2	100	0	56	0	50	0	50	1.00
7332633--7332661	2	14.5	2	100	0	58	48	51	0	0	1.00
7336552--7336577	2	13.0	2	100	0	52	50	0	0	50	1.00
7341898--7341933	17	2.0	18	89	10	56	52	0	0	47	1.00
7344774--7344799	12	2.2	12	100	0	52	57	0	15	26	1.38
7349908--7349993	38	2.2	39	80	13	90	40	2	1	55	1.20
7352792--7352816	11	2.3	11	100	0	50	0	0	44	56	0.99
7356916--7356944	2	14.5	2	100	0	58	0	51	0	48	1.00
7367233--7367343	51	2.2	51	81	0	132	32	5	18	43	1.73
7367497--7367566	22	3.1	22	78	10	54	37	11	17	34	1.85
7367720--7367771	22	2.3	22	83	3	59	51	13	9	25	1.71
7370808--7370870	25	2.5	25	92	0	108	20	17	36	25	1.94
7374859--7375304	226	2.0	227	90	1	698	32	13	11	43	1.79
7375288--7375312	4	6.2	4	100	0	50	76	0	0	24	0.80
7377114--7377145	4	8.0	4	100	0	64	75	0	0	25	0.81
7381022--7381078	13	4.2	12	74	22	51	75	1	17	5	1.07
7382442--7382516	37	2.0	37	86	0	105	46	14	9	29	1.76
7384757--7384806	25	2.0	25	100	0	100	44	28	8	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7389620--7389649	2	15.0	2	100	0	60	50	0	0	50	1.00
7390301--7390337	2	18.5	2	89	10	58	48	2	0	48	1.15
7390801--7390844	13	3.7	13	71	22	51	15	70	0	13	1.17
7390802--7390844	22	2.0	22	90	9	70	13	72	0	13	1.13
7390741--7390906	91	1.8	89	82	5	208	22	58	7	12	1.58
7395654--7395693	2	20.0	2	100	0	80	50	0	0	50	1.00
7404528--7404618	45	2.0	45	86	0	128	36	15	18	29	1.92
7418234--7418263	2	15.0	2	100	0	60	50	0	0	50	1.00
7423535--7423565	5	6.4	5	96	3	55	61	0	0	38	0.96
7423819--7423861	21	2.0	21	82	8	52	46	0	2	51	1.13
7427094--7427120	2	13.5	2	100	0	54	48	0	0	51	1.00
7435832--7436043	67	3.2	67	95	2	383	37	21	15	25	1.93
7437686--7437728	16	2.7	16	77	22	54	30	2	0	67	1.03
7439444--7439484	2	20.5	2	94	0	73	51	2	0	46	1.14
7449199--7449230	2	16.0	2	100	0	64	50	0	0	50	1.00
7454207--7454237	6	5.2	6	96	0	53	80	0	19	0	0.71
7470756--7470798	15	2.9	15	89	0	68	20	23	20	34	1.96
7509621--7509652	3	10.7	3	93	0	55	0	31	31	37	1.58
7513433--7513468	18	2.1	18	89	5	56	41	0	0	58	0.98
7513897--7513935	18	2.2	18	86	9	53	43	0	0	56	0.99
7515333--7515359	2	13.5	2	100	0	54	48	0	0	51	1.00
7527822--7527967	69	2.1	70	92	2	242	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7532215--7532244	2	15.0	2	100	0	60	50	0	50	0	1.00
7541066--7541097	2	16.0	2	100	0	64	50	0	0	50	1.00
7567346--7567375	3	10.0	3	92	0	51	70	0	30	0	0.88
7572876--7572909	2	17.0	2	87	0	50	47	2	2	47	1.32
7573242--7573298	25	2.3	25	87	0	87	42	0	1	56	1.10
7574730--7574848	40	3.0	40	80	3	132	24	2	14	58	1.48
7593287--7593315	2	14.5	2	100	0	58	51	0	0	48	1.00
7610492--7610522	2	15.5	2	100	0	62	48	0	0	51	1.00
7614200--7614251	20	2.5	20	84	6	59	57	7	5	28	1.50
7623384--7623499	58	2.0	58	96	0	214	35	7	14	42	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20