genome.fa.s7.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  5  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593036--1593284	118	2.1	118	93	0	435	26	17	22	33	1.96
1599111--1599353	80	3.0	80	81	7	242	34	22	9	32	1.87
1600365--1600444	21	3.9	20	69	19	58	37	16	13	32	1.88
1616505--1616543	9	4.3	9	86	0	51	35	10	10	43	1.73
1616751--1616805	21	2.6	21	82	0	65	65	5	5	23	1.35
1624428--1624537	32	3.3	32	79	7	112	35	26	11	26	1.91
1625142--1625222	21	3.8	20	73	15	56	46	11	8	33	1.70
1625279--1625347	21	3.2	21	85	4	102	50	13	5	30	1.64
1625264--1625347	43	2.0	43	90	0	132	52	13	4	29	1.60
1625457--1625521	21	3.1	20	80	4	58	43	23	9	24	1.83
1628730--1628822	40	2.3	40	90	0	141	18	33	4	44	1.69
1628848--1628892	23	2.0	23	90	0	72	11	24	6	57	1.57
1629301--1629351	25	2.1	25	88	3	77	37	15	5	41	1.72
1629307--1629387	26	3.2	26	79	10	78	38	16	7	38	1.76
1629391--1629699	122	2.5	122	79	3	336	34	14	13	37	1.85
1630810--1630846	2	18.5	2	100	0	74	48	0	0	51	1.00
1631957--1632011	13	3.9	15	81	13	64	27	0	3	69	1.05
1631957--1632011	28	2.0	28	85	7	76	27	0	3	69	1.05
1633632--1633668	19	1.9	19	94	0	65	37	16	13	32	1.87
1635949--1636007	21	2.8	21	79	5	57	44	10	11	33	1.75
1637832--1638052	35	6.3	36	81	3	211	35	6	13	44	1.71
1637862--1638071	71	2.9	71	83	4	255	36	7	13	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647485--1647573	31	2.8	31	79	6	90	21	5	23	49	1.70
1654414--1654476	21	3.0	21	77	13	76	0	36	0	63	0.95
1654412--1654461	4	12.0	4	79	8	55	0	34	0	66	0.92
1654422--1654474	17	3.0	17	78	15	63	0	33	0	66	0.92
1654411--1654481	13	5.5	13	77	11	65	0	35	0	64	0.94
1656144--1656240	38	2.6	38	91	1	151	34	9	19	37	1.84
1670831--1670911	38	2.1	38	83	0	99	38	19	22	19	1.94
1672367--1672463	20	4.8	20	92	5	151	40	11	16	31	1.84
1672808--1672856	2	24.5	2	87	8	73	2	2	46	48	1.25
1675493--1675560	32	2.3	28	71	20	66	30	22	13	33	1.92
1676248--1676304	28	2.0	28	83	6	71	29	7	10	52	1.62
1677143--1677168	12	2.2	12	100	0	52	50	15	26	7	1.71
1679228--1679266	18	2.0	20	85	9	55	28	33	15	23	1.95
1689274--1689412	53	2.5	54	81	4	163	29	17	13	39	1.88
1718335--1718440	30	3.6	30	83	5	108	53	1	5	38	1.35
1719907--1720007	11	7.8	13	70	18	61	61	1	0	35	1.14
1719885--1720007	12	9.8	12	68	20	56	60	1	1	35	1.16
1720463--1720495	15	2.3	15	89	5	50	69	0	3	27	1.03
1726539--1726576	2	19.5	2	94	5	69	50	0	0	50	1.00
1727439--1727478	20	2.0	19	85	9	53	50	5	5	40	1.46
1727415--1727478	19	3.3	19	74	20	60	53	3	6	37	1.42
1732669--1732712	21	2.1	21	91	0	70	34	11	9	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1732711--1732807	47	2.1	46	98	1	185	54	8	18	18	1.68
1736112--1736145	14	2.4	14	95	0	59	47	8	0	44	1.34
1740569--1740612	22	2.0	21	82	8	52	50	0	0	50	1.00
1744879--1744903	6	4.2	6	100	0	50	16	36	0	48	1.46
1748073--1748120	16	2.7	18	81	15	55	41	4	8	45	1.53
1754591--1754616	4	6.5	4	100	0	52	0	26	23	50	1.50
1771068--1771170	27	3.9	28	69	15	85	50	5	8	34	1.57
1772002--1772034	9	3.8	9	88	8	50	42	0	0	57	0.98
1775836--1775875	15	2.8	15	85	7	57	75	0	0	25	0.81
1787459--1787644	45	4.1	45	87	0	246	45	2	37	15	1.58
1787213--1787665	42	10.6	42	81	4	370	43	5	35	15	1.71
1787943--1788255	165	1.9	165	81	6	384	43	13	24	17	1.85
1787705--1788412	42	16.9	42	74	8	487	44	11	25	17	1.83
1787689--1788439	126	6.0	125	77	8	553	45	11	25	17	1.82
1796367--1796398	2	16.0	2	100	0	64	50	0	0	50	1.00
1800394--1800441	23	2.0	24	84	4	62	41	31	16	10	1.82
1811094--1811128	6	5.8	6	86	0	52	40	0	14	45	1.45
1812301--1812348	22	2.2	21	79	17	53	47	2	0	50	1.12
1825727--1825773	24	2.0	23	84	12	60	27	2	8	61	1.36
1829149--1829174	3	8.7	3	100	0	52	69	0	0	30	0.89
1829725--1829775	19	2.7	19	96	0	93	37	17	13	31	1.89
1832030--1832087	2	29.0	2	100	0	116	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1837311--1837374	27	2.4	27	83	0	74	29	20	28	21	1.98
1837331--1837387	27	2.1	27	90	0	87	26	26	31	15	1.96
1838483--1838731	52	4.8	52	81	2	284	21	22	15	40	1.90
1839750--1839854	33	3.2	33	76	0	111	33	37	9	20	1.85
1843144--1843174	2	15.5	2	100	0	62	51	0	0	48	1.00
1848034--1848064	2	15.5	2	93	0	53	54	0	45	0	0.99
1852980--1853122	29	5.0	28	83	8	171	41	9	11	37	1.75
1852980--1853142	59	2.8	58	84	6	206	41	9	10	39	1.71
1852980--1853132	28	5.3	28	81	12	159	41	9	11	37	1.72
1854295--1854341	4	11.8	4	86	8	69	51	0	27	21	1.48
1857678--1857721	21	2.0	22	86	4	63	29	0	9	61	1.27
1858371--1858414	12	3.9	11	88	11	63	43	15	40	0	1.47
1858371--1858416	22	2.1	22	88	8	67	43	15	41	0	1.46
1861823--1862031	107	2.0	107	87	1	303	60	11	10	17	1.58
1867331--1867374	21	2.0	22	91	4	72	61	6	0	31	1.22
1870903--1870959	30	1.9	29	86	10	80	19	5	14	61	1.51
1883941--1884097	77	2.0	77	100	0	314	15	12	21	49	1.78
1887575--1887612	20	1.9	20	94	0	67	42	18	13	26	1.87
1896864--1896919	28	2.0	28	96	0	103	32	19	10	37	1.86
1899989--1900015	2	13.5	2	100	0	54	48	0	0	51	1.00
1902492--1902525	16	2.1	16	100	0	68	14	17	50	17	1.79
1912742--1912777	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915009--1915063	28	2.0	28	88	0	83	60	16	1	21	1.45
1918090--1918149	30	2.0	30	86	0	84	41	15	35	8	1.77
1918120--1918242	35	3.0	43	70	26	120	32	15	37	14	1.88
1918044--1918242	75	2.6	75	87	5	256	33	16	37	13	1.87
1919744--1919818	32	2.3	32	83	2	87	50	4	5	40	1.44
1920769--1920838	28	2.4	30	85	4	99	32	12	5	48	1.65
1920930--1920966	19	1.9	19	88	0	56	56	2	5	35	1.36
1927265--1927314	24	2.1	24	100	0	100	20	20	24	36	1.95
1931402--1931514	2	56.5	2	89	0	172	50	5	0	44	1.24
1931588--1931620	13	2.4	14	90	10	50	42	0	0	57	0.98
1933379--1933425	19	2.5	19	86	6	60	25	23	0	51	1.49
1934068--1934123	18	3.1	18	78	0	58	37	25	17	19	1.94
1937967--1938004	20	1.9	19	94	5	67	21	23	0	55	1.44
1938810--1938853	15	3.0	15	76	6	54	59	0	0	40	0.98
1939344--1939416	30	2.4	30	75	6	76	26	23	10	39	1.87
1939898--1940096	73	2.7	73	81	0	218	19	16	15	48	1.81
1950664--1950719	25	2.2	25	83	0	67	26	14	30	28	1.95
1958466--1958502	17	2.2	17	90	0	56	29	13	35	21	1.92
1969248--1969297	21	2.4	21	86	0	73	28	8	16	48	1.74
1976924--1976963	14	2.9	14	92	0	62	22	7	35	35	1.82
1979206--1979262	27	2.2	26	84	9	71	15	12	3	68	1.34
1981867--1981901	18	1.9	18	88	11	54	51	31	2	14	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981996--1982030	16	2.1	17	89	5	54	40	0	11	48	1.39
1983355--1983439	43	2.0	43	100	0	170	37	4	28	29	1.77
1989258--1989293	18	2.0	18	88	0	54	36	36	22	5	1.78
1989361--1989408	21	2.3	20	79	10	51	37	2	12	47	1.53
1989464--1989496	13	2.5	13	100	0	66	36	15	0	48	1.45
1991776--1991808	15	2.1	16	88	5	50	36	15	0	48	1.45
1991879--1991935	30	1.9	30	92	0	96	52	0	8	38	1.33
2000037--2000077	20	2.0	20	100	0	82	31	29	9	29	1.89
2000987--2001085	24	3.8	24	76	17	99	45	13	10	31	1.76
2000987--2001143	54	2.9	54	87	1	206	43	15	10	29	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20