genome.fa.s7.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  3  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799466--799550	31	2.8	29	82	7	98	61	5	16	16	1.53
802641--802697	2	28.5	2	78	0	60	45	7	3	43	1.48
802617--802694	34	2.3	34	97	0	147	42	11	5	41	1.63
803279--803332	24	2.1	26	86	13	76	22	27	12	37	1.91
803742--803774	2	16.5	2	100	0	66	48	0	0	51	1.00
803785--803927	73	2.0	73	91	0	232	30	14	13	40	1.85
812343--812380	12	3.2	12	96	0	67	31	0	18	50	1.47
812339--812390	8	6.8	8	80	8	54	36	0	15	48	1.45
812347--812380	4	8.5	4	93	0	59	29	0	20	50	1.49
814377--814436	23	2.6	24	81	7	70	55	5	0	40	1.22
814776--814827	21	2.5	21	87	0	68	19	15	0	65	1.27
820230--820316	39	2.2	38	78	6	93	48	18	5	27	1.71
824930--825020	31	2.8	32	86	3	121	39	10	14	35	1.81
825758--825796	18	2.1	19	86	13	55	38	0	15	46	1.46
828702--828730	3	9.7	3	100	0	58	34	0	31	34	1.58
836853--836935	21	4.0	21	75	6	69	40	14	16	27	1.88
837537--837591	24	2.3	24	96	0	101	23	23	9	43	1.82
838246--838280	18	1.9	18	88	0	52	25	0	0	74	0.82
842715--842795	26	2.9	28	85	12	105	43	17	11	28	1.83
847320--847379	30	2.0	30	86	0	84	53	3	28	15	1.57
847345--847398	21	2.6	21	74	8	56	53	1	31	12	1.50
847323--847387	30	2.2	30	82	0	76	55	3	29	12	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849424--849461	12	3.2	12	82	14	51	44	7	28	18	1.78
849991--850052	30	2.1	30	90	0	97	19	16	27	37	1.93
850099--850272	75	2.4	74	78	10	185	30	17	15	36	1.91
850804--850835	3	10.7	3	93	0	55	37	0	28	34	1.57
856025--856054	16	1.9	15	93	6	51	13	3	16	66	1.37
856232--856307	21	3.7	20	76	3	80	34	11	14	39	1.83
865364--865492	68	1.9	67	88	1	195	39	10	19	30	1.86
866120--866152	16	2.0	17	94	5	59	48	9	18	24	1.76
883328--883367	13	3.0	13	89	10	55	60	0	0	40	0.97
891020--891050	2	15.5	2	100	0	62	51	0	0	48	1.00
894697--894775	32	2.5	32	100	0	158	41	22	12	22	1.88
895914--895952	19	2.1	19	90	9	62	41	0	0	58	0.98
895705--896003	151	2.0	148	80	8	340	43	3	1	51	1.28
896142--896196	22	2.6	21	78	13	60	47	0	1	50	1.11
896142--896203	21	3.0	21	75	17	58	46	1	1	50	1.20
899598--899631	2	17.0	2	100	0	68	50	0	0	50	1.00
901270--901324	23	2.3	23	81	15	58	40	1	9	49	1.45
905048--905083	19	1.9	19	94	5	65	61	0	22	16	1.35
905699--905736	20	1.9	20	94	0	67	21	15	15	47	1.82
905742--905825	35	2.4	35	79	0	96	23	15	14	46	1.82
924630--924690	15	3.9	16	77	10	56	67	1	29	1	1.10
937362--937440	40	2.0	40	85	5	106	21	18	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943080--943209	67	1.9	67	84	3	172	31	11	22	34	1.90
952785--952811	2	13.5	2	100	0	54	51	0	0	48	1.00
960853--960898	22	2.1	22	84	8	58	39	26	6	28	1.81
967211--967263	27	2.0	27	92	0	88	39	5	15	39	1.70
967243--967480	27	8.9	27	78	3	214	41	3	19	35	1.69
967263--967442	81	2.2	81	88	2	254	39	3	21	35	1.72
967243--967440	108	1.8	107	82	5	256	38	3	21	36	1.71
968045--968090	20	2.3	20	84	0	56	32	2	8	56	1.42
968423--968466	21	2.2	19	88	8	61	43	4	0	52	1.22
979796--979822	14	1.9	14	100	0	54	62	0	0	37	0.95
981274--981313	19	2.2	19	86	4	55	50	0	5	45	1.23
988244--988275	9	3.7	9	91	8	57	21	0	12	65	1.25
991366--991549	74	2.5	75	87	1	264	41	14	17	25	1.88
1004202--1004245	13	3.6	12	81	12	54	79	2	18	0	0.83
1004204--1004247	18	2.3	20	85	14	67	77	4	18	0	0.94
1007138--1007186	23	2.1	23	96	0	89	32	4	20	42	1.71
1011492--1011534	20	2.2	20	83	8	52	48	11	16	23	1.78
1014169--1014266	50	2.0	50	89	0	151	42	9	3	44	1.51
1014636--1014694	28	2.1	28	93	6	102	59	1	0	38	1.08
1014802--1014852	20	2.5	20	93	0	84	19	7	25	47	1.76
1014821--1014892	20	3.6	20	83	3	65	23	9	18	48	1.77
1015252--1015298	19	2.4	19	82	10	51	48	2	4	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015268--1015301	17	1.9	18	88	5	52	47	2	0	50	1.16
1015294--1015339	22	2.0	23	83	4	58	43	8	2	45	1.47
1025688--1025754	24	2.7	23	76	17	64	53	0	1	44	1.09
1025750--1025789	17	2.4	17	87	8	55	52	0	0	47	1.00
1026617--1026662	4	10.8	4	84	11	56	23	0	0	76	0.79
1026618--1026660	22	2.0	22	90	9	70	25	0	0	74	0.82
1026617--1026662	13	3.5	13	82	14	51	23	0	0	76	0.79
1026628--1026681	22	2.4	22	81	9	56	24	5	0	70	1.08
1032449--1032524	37	2.1	37	97	0	143	35	10	19	34	1.86
1034122--1034184	30	2.1	30	90	0	99	46	6	31	15	1.71
1037788--1037843	20	2.7	21	83	5	69	25	16	21	37	1.93
1046702--1046741	20	2.0	20	95	0	71	32	25	12	30	1.92
1052722--1052763	22	1.9	22	85	0	57	52	11	4	30	1.59
1053104--1053142	18	2.2	19	86	9	55	51	0	2	46	1.14
1063015--1063056	20	2.3	18	88	12	59	30	0	4	64	1.14
1064666--1064696	10	3.1	10	95	0	53	19	3	9	67	1.33
1068228--1068330	44	2.3	44	100	0	206	39	29	7	23	1.82
1070863--1071074	35	6.1	36	81	3	202	42	13	8	35	1.73
1070861--1071067	71	2.9	69	78	7	209	43	13	8	35	1.73
1072450--1072476	14	1.9	14	100	0	54	29	0	11	59	1.32
1075770--1075802	14	2.4	14	90	10	50	30	30	15	24	1.95
1076791--1076847	22	2.7	21	83	8	71	35	12	19	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085168--1085197	3	10.0	3	100	0	60	33	0	0	66	0.92
1097798--1097901	35	3.0	35	82	2	111	19	17	21	42	1.89
1111824--1111934	29	3.8	29	79	0	123	20	22	10	45	1.82
1112937--1113000	25	2.4	25	80	12	67	29	31	15	23	1.95
1114299--1114331	4	8.2	4	93	0	57	0	30	0	69	0.88
1115744--1115818	29	2.6	29	76	2	80	13	28	6	52	1.65
1121947--1121978	3	10.7	3	93	0	55	28	0	0	71	0.86
1129313--1129357	20	2.2	20	84	0	54	15	24	22	37	1.93
1130001--1130027	14	1.9	14	100	0	54	51	0	29	18	1.46
1141549--1141598	23	2.2	23	82	7	57	22	14	46	18	1.84
1141640--1141720	23	3.5	23	78	9	94	34	7	32	25	1.84
1142501--1142558	30	1.9	31	89	3	91	25	17	24	32	1.96
1142496--1142634	31	4.5	30	81	5	163	28	16	20	34	1.94
1142496--1142634	61	2.3	61	86	6	183	28	16	20	34	1.94
1146399--1146588	31	6.2	31	73	6	136	27	32	11	28	1.91
1146366--1146574	62	3.4	61	77	6	188	26	33	11	28	1.91
1146354--1146781	122	3.5	122	79	4	315	26	32	11	29	1.92
1146338--1146781	31	14.5	31	69	7	134	26	31	12	29	1.93
1147558--1147598	21	2.0	21	95	0	73	21	29	24	24	1.99
1155812--1155953	23	6.3	23	72	11	98	38	17	10	33	1.84
1155812--1155953	44	3.2	45	81	6	137	38	17	10	33	1.84
1155894--1155999	22	4.9	22	82	12	139	39	18	12	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1155850--1155997	44	3.4	44	83	5	158	40	17	11	30	1.85
1155850--1156007	65	2.4	67	85	3	205	39	18	11	30	1.86
1156259--1156381	63	2.0	63	81	3	149	36	11	26	25	1.90
1157971--1158034	15	4.1	15	75	16	58	65	0	34	0	0.93
1159573--1159632	25	2.3	25	80	5	66	31	30	13	25	1.93
1165366--1165606	68	3.5	68	79	1	250	37	18	7	36	1.79
1176548--1176633	43	2.0	43	93	0	145	44	10	15	30	1.80
1178986--1179437	169	2.7	167	86	6	590	33	11	13	41	1.80
1192422--1192465	21	2.0	22	91	4	72	31	0	6	61	1.22
1192991--1193037	22	2.1	22	96	0	85	23	25	38	12	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20