genome.fa.s7.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  19  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8890822--8890876	12	4.6	12	86	0	74	7	45	3	43	1.49
8891454--8891709	128	2.0	128	94	0	449	26	10	26	35	1.90
8899057--8899096	19	2.0	20	85	4	55	37	15	2	45	1.59
8900670--8900711	20	2.0	21	86	4	59	28	0	0	71	0.86
8906789--8906847	25	2.4	25	80	8	75	33	13	10	42	1.78
8906930--8907044	25	4.5	26	67	22	64	33	10	13	41	1.79
8906832--8907057	81	2.8	81	82	5	246	32	10	12	44	1.76
8912354--8912388	17	2.1	17	88	0	52	40	2	0	57	1.14
8913912--8913945	17	2.0	17	100	0	68	41	17	17	23	1.90
8919066--8919217	76	2.0	76	98	0	295	40	13	11	33	1.82
8927095--8927132	15	2.5	15	87	8	51	50	0	0	50	1.00
8931436--8931479	11	3.7	11	77	16	52	52	0	0	47	1.00
8931428--8931479	25	2.1	25	89	3	79	55	0	0	44	0.99
8931428--8931486	13	4.7	13	79	8	68	54	0	0	45	0.99
8931428--8931486	24	2.4	25	88	5	84	54	0	0	45	0.99
8931910--8931946	15	2.5	15	90	0	56	72	0	0	27	0.84
8931902--8931954	24	2.2	24	80	16	56	69	0	1	28	0.99
8932209--8932244	18	2.1	18	89	5	56	66	2	0	30	1.06
8932255--8932311	29	2.0	29	86	6	80	68	0	3	28	1.06
8932989--8933050	29	2.1	29	82	11	74	40	3	0	56	1.15
8933054--8933088	14	2.6	13	86	8	52	57	0	0	42	0.99
8933204--8933244	4	10.5	4	80	15	50	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8933206--8933244	15	2.5	16	88	12	55	48	0	2	48	1.15
8986762--8986787	2	13.0	2	100	0	52	50	50	0	0	1.00
9011770--9011809	2	20.0	2	94	0	71	47	0	2	50	1.14
9022606--9022634	14	2.0	15	93	6	51	0	31	0	68	0.89
9022893--9022917	5	5.0	5	100	0	50	60	20	0	20	1.37
9025755--9025784	6	4.8	6	95	4	51	83	0	0	16	0.65
9034981--9035010	12	2.5	12	100	0	60	0	13	43	43	1.43
9048437--9048474	13	2.9	13	84	0	58	7	18	13	60	1.56
9049385--9049418	3	11.3	3	100	0	68	0	32	0	67	0.91
9057156--9057196	10	4.4	10	79	14	52	41	0	0	58	0.98
9073071--9073132	29	2.2	29	82	8	74	30	1	0	67	1.00
9073080--9073134	28	1.9	28	88	3	83	27	1	0	70	0.97
9073434--9073468	17	2.0	18	88	5	54	51	0	0	48	1.00
9073449--9073496	22	2.3	20	79	10	60	45	0	0	54	0.99
9087264--9087482	97	2.2	101	83	6	270	31	22	14	31	1.93
9104830--9104876	22	2.1	22	100	0	94	74	4	8	12	1.19
9140862--9140895	6	5.7	6	96	0	50	41	14	44	0	1.45
9140859--9140895	12	3.1	12	88	0	56	43	16	40	0	1.48
9160477--9160514	2	19.0	2	88	0	58	47	47	5	0	1.24
9209866--9209910	22	1.9	23	82	13	56	4	20	2	73	1.11
9216383--9216423	16	2.7	15	85	14	57	68	0	0	31	0.90
9220749--9220782	2	17.0	2	93	0	59	47	2	0	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9233414--9233510	49	2.0	48	95	2	176	15	21	57	5	1.57
9245700--9245729	5	6.2	5	92	7	53	83	0	16	0	0.65
9263258--9263289	16	2.1	16	88	11	50	65	15	12	6	1.44
9268201--9268235	4	8.8	4	100	0	70	0	22	0	77	0.78
9268713--9268756	23	1.9	23	90	0	70	45	2	9	43	1.48
9275736--9275893	50	3.2	49	73	10	176	34	5	1	59	1.27
9275733--9275949	100	2.2	98	93	3	373	32	4	0	62	1.21
9275889--9275961	21	3.6	21	75	17	73	28	1	1	68	1.06
9275902--9275949	15	3.0	15	80	16	51	29	0	0	70	0.87
9275905--9275991	18	4.9	18	75	12	81	27	0	1	71	0.93
9275802--9275985	33	5.6	33	70	14	121	31	2	1	64	1.14
9276012--9276089	26	3.0	24	74	15	66	30	0	0	69	0.89
9276009--9276076	33	2.1	33	86	8	95	35	0	0	64	0.94
9276024--9276103	40	2.1	38	85	4	106	35	0	0	65	0.93
9278528--9278553	12	2.2	12	100	0	52	38	15	26	19	1.91
9291115--9291416	150	2.0	150	95	0	541	33	11	19	36	1.87
9302619--9302675	25	2.5	22	80	8	69	35	0	1	63	1.05
9302824--9302862	19	2.1	19	85	9	53	48	0	0	51	1.00
9304390--9304433	11	4.3	10	83	11	54	86	0	13	0	0.57
9304390--9304433	16	2.9	16	84	15	58	86	0	13	0	0.57
9311478--9311504	8	3.4	8	100	0	54	33	14	11	40	1.82
9313389--9313424	18	1.9	19	88	5	56	41	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9319175--9319201	3	9.0	3	100	0	54	66	0	0	33	0.92
9320222--9320266	20	2.4	19	85	14	58	55	4	0	40	1.20
9326507--9326537	15	2.1	15	93	0	53	0	16	0	83	0.64
9334891--9334931	6	6.8	6	94	0	55	36	17	24	21	1.94
9351050--9351083	14	2.4	14	85	0	50	55	5	2	35	1.39
9354657--9354683	2	13.5	2	100	0	54	51	0	0	48	1.00
9355891--9355954	31	2.1	31	90	0	101	26	34	26	12	1.92
9360957--9360990	10	3.4	10	88	12	52	38	0	0	61	0.96
9362753--9362803	25	2.0	25	92	0	84	23	19	17	39	1.92
9366840--9366925	35	2.5	35	82	3	102	47	11	13	26	1.78
9372573--9372601	2	14.5	2	100	0	58	0	48	0	51	1.00
9372604--9372642	14	2.9	14	88	7	55	0	23	0	76	0.78
9386325--9386374	25	2.1	23	85	14	66	68	0	2	30	1.01
9386429--9386478	18	2.6	19	84	6	57	68	0	0	32	0.90
9387672--9387715	21	2.0	23	82	8	56	43	0	0	56	0.99
9389702--9389789	41	2.1	41	87	0	122	44	10	14	30	1.79
9390941--9390976	18	2.0	19	89	10	58	16	5	0	77	0.94
9395794--9395860	15	4.4	15	84	1	80	35	7	22	34	1.82
9396192--9396369	6	30.0	6	64	24	58	34	1	0	64	1.06
9396014--9396460	112	4.0	113	93	4	727	34	2	0	62	1.12
9396316--9396384	23	3.1	22	82	14	88	37	0	0	62	0.96
9396303--9396406	48	2.2	47	83	13	124	37	0	0	61	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9396201--9396457	9	29.7	9	62	25	74	35	1	0	62	1.10
9396398--9396585	39	4.9	38	73	15	122	30	2	1	65	1.13
9396462--9396582	26	4.4	28	63	25	60	30	2	0	66	1.11
9398248--9398284	14	2.6	14	95	4	65	40	18	10	29	1.85
9413426--9413496	31	2.2	31	87	7	97	70	1	1	26	1.04
9413446--9413529	24	3.3	23	73	22	71	70	1	2	26	1.07
9413492--9413586	32	3.0	32	82	10	97	68	0	2	29	1.01
9413434--9413566	27	5.1	26	76	15	105	70	0	1	27	1.01
9413418--9413529	5	21.4	5	69	20	52	70	0	1	26	1.03
9413467--9413568	47	2.2	46	81	10	120	71	0	0	27	0.92
9413519--9413664	33	4.4	33	73	9	109	66	2	1	30	1.11
9413823--9413863	20	2.0	20	95	0	73	41	19	2	36	1.65
9418256--9418341	40	2.2	40	93	4	149	33	13	17	34	1.89
9427147--9427257	41	2.7	41	84	2	134	30	9	33	26	1.89
9433640--9433694	22	2.4	24	78	6	60	45	0	0	54	0.99
9440979--9441068	25	3.5	25	73	8	65	33	3	1	62	1.19
9441032--9441094	22	2.8	23	81	18	80	31	0	1	66	1.01
9441032--9441104	21	3.4	22	82	14	91	31	0	1	67	1.00
9442618--9442827	107	1.9	109	84	5	284	48	2	10	38	1.52
9444461--9444507	18	2.6	19	80	12	55	31	10	29	27	1.90
9444511--9444550	18	2.2	18	100	0	80	40	5	30	25	1.77
9444800--9444857	27	2.1	27	96	0	107	37	25	13	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9444758--9444910	80	2.0	76	85	9	206	36	18	15	28	1.92
9445029--9445179	44	3.5	44	73	14	141	39	17	15	27	1.91
9464012--9464045	13	2.7	13	86	4	52	0	26	5	67	1.13
9467928--9467954	2	13.5	2	100	0	54	51	0	0	48	1.00
9495261--9495321	22	2.7	22	78	17	63	50	0	0	49	1.00
9495266--9495320	19	2.8	20	72	22	55	54	0	0	45	0.99
9498369--9498393	11	2.3	11	100	0	50	20	12	36	32	1.89
9501471--9501495	7	3.6	7	100	0	50	0	0	12	88	0.53
9506266--9506306	15	2.7	15	84	0	55	43	17	2	36	1.62
9506364--9506392	2	14.5	2	100	0	58	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20