genome.fa.s7.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  7  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2434804--2434835	10	3.1	11	91	8	50	53	6	0	40	1.26
2437124--2437157	17	2.1	16	88	5	50	35	0	0	64	0.94
2437790--2437849	20	2.8	21	70	14	52	58	0	0	41	0.98
2437867--2437900	9	3.8	9	88	0	50	35	0	0	64	0.94
2438156--2438190	16	2.2	16	90	5	54	40	0	0	60	0.97
2440523--2440566	23	2.0	22	86	8	63	45	0	2	52	1.13
2452487--2452519	15	2.2	15	89	10	50	27	0	0	72	0.85
2452936--2452971	5	7.2	5	90	0	54	22	36	19	22	1.95
2455333--2455403	33	2.2	33	89	0	106	35	16	25	22	1.95
2456351--2456376	5	5.2	5	100	0	52	80	0	0	19	0.71
2456824--2456856	15	2.1	17	88	11	52	48	3	3	45	1.33
2465456--2465499	22	2.0	22	90	0	70	54	0	0	45	0.99
2471904--2471936	17	1.9	17	93	0	57	9	6	3	81	0.95
2476008--2476050	21	2.0	21	86	8	61	34	18	11	34	1.87
2488446--2488471	3	8.7	3	100	0	52	65	0	0	34	0.93
2497499--2497523	2	12.5	2	100	0	50	0	0	48	52	1.00
2514354--2514394	16	2.5	16	88	4	55	39	2	0	58	1.11
2515088--2515254	80	2.1	80	81	6	187	32	8	22	35	1.84
2520608--2520738	51	2.5	51	80	6	122	32	9	24	33	1.87
2524315--2524365	25	2.0	25	84	0	66	39	19	5	35	1.76
2524587--2524671	29	2.9	30	77	8	93	21	18	28	31	1.97
2540364--2540406	10	4.5	10	85	8	63	51	16	2	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2542793--2542872	33	2.4	33	82	0	106	41	2	13	42	1.58
2549777--2549828	17	3.1	17	84	13	63	59	5	0	34	1.21
2565791--2565837	22	2.1	23	84	4	60	53	12	6	27	1.63
2566205--2566230	13	2.0	13	100	0	52	30	0	0	69	0.89
2573653--2573879	71	3.2	71	88	1	310	44	16	17	22	1.86
2573932--2573973	21	2.0	22	85	4	59	40	9	23	26	1.85
2574470--2574598	50	2.5	51	85	3	154	29	14	23	32	1.94
2585515--2585561	21	2.2	21	85	7	60	25	0	6	68	1.13
2592154--2592230	21	3.7	21	92	0	118	38	18	18	24	1.92
2601532--2601571	18	2.2	19	86	4	55	60	7	5	27	1.45
2610411--2610621	112	1.9	112	88	0	323	31	11	16	40	1.84
2612599--2612633	14	2.6	13	91	8	61	54	14	0	31	1.40
2614376--2614421	20	2.2	21	84	7	58	60	6	0	32	1.22
2615437--2615490	15	3.9	15	77	17	55	68	5	0	25	1.11
2615436--2615511	27	2.7	28	80	10	84	67	3	2	26	1.22
2619436--2619590	80	1.9	79	84	1	202	33	25	10	30	1.90
2619517--2619671	71	2.2	71	83	9	190	32	22	9	34	1.87
2619950--2620094	73	2.0	73	100	0	290	40	20	2	37	1.67
2621762--2621789	2	14.0	2	100	0	56	50	0	0	50	1.00
2625866--2625941	27	3.0	26	75	17	70	44	1	1	52	1.17
2625903--2626017	41	2.8	41	96	2	205	46	3	0	50	1.18
2632438--2632484	2	23.5	2	100	0	94	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2634036--2634060	7	3.6	7	100	0	50	0	12	0	88	0.53
2638199--2638242	20	2.1	21	83	4	54	43	4	2	50	1.35
2645074--2645107	17	1.9	17	88	5	50	70	5	0	23	1.09
2651396--2651435	20	2.1	19	85	4	53	40	0	10	50	1.36
2660538--2660759	112	2.0	112	82	1	275	32	15	17	34	1.91
2670204--2670262	27	2.1	28	96	3	111	52	3	3	40	1.35
2677547--2677604	31	1.9	30	85	3	80	53	6	3	36	1.45
2678418--2678447	3	10.0	3	92	0	51	30	33	0	36	1.58
2679198--2679229	2	16.0	2	100	0	64	50	0	0	50	1.00
2679655--2679691	12	3.1	12	92	0	56	78	0	10	10	0.97
2681834--2681871	18	2.1	18	85	9	51	52	5	2	39	1.38
2682116--2682155	19	2.1	19	85	0	53	57	10	5	27	1.52
2702578--2702642	21	3.0	21	80	10	62	33	4	0	61	1.16
2704416--2704461	10	4.8	10	86	7	60	43	15	0	41	1.46
2704416--2704474	29	2.0	30	87	9	86	45	11	0	42	1.41
2710408--2710477	23	2.9	22	77	22	86	55	1	0	42	1.08
2710323--2710455	42	3.1	42	73	17	112	51	3	2	43	1.29
2710424--2710483	27	2.1	29	90	6	97	58	1	0	40	1.08
2710370--2710478	15	7.1	15	66	20	57	54	0	0	44	1.12
2710383--2710489	26	4.2	25	77	19	87	57	0	0	40	1.11
2710560--2710605	15	2.8	17	80	12	60	69	0	0	30	0.89
2710574--2710614	15	2.8	14	85	10	55	75	0	2	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2711918--2711959	16	2.6	17	78	14	54	26	2	9	61	1.39
2712151--2712189	21	1.9	20	94	5	69	30	15	20	33	1.94
2713108--2713244	69	2.0	69	92	0	229	26	32	13	27	1.94
2730335--2730419	36	2.4	36	82	5	93	36	17	27	18	1.94
2743731--2743982	27	9.3	27	77	4	168	39	15	9	36	1.79
2743733--2744018	27	10.6	27	74	5	159	39	14	9	36	1.79
2744506--2744555	24	2.0	25	84	3	66	16	8	2	74	1.15
2744304--2744686	202	1.9	206	82	6	490	33	13	8	45	1.73
2750557--2750599	15	2.9	14	83	10	50	72	11	11	4	1.27
2757761--2757791	2	15.5	2	100	0	62	51	0	0	48	1.00
2759752--2759781	3	10.0	3	92	0	51	66	3	0	30	1.07
2760604--2760634	15	2.1	15	93	0	53	32	0	0	67	0.91
2763114--2763154	20	2.0	20	86	9	57	51	0	0	48	1.00
2777647--2777684	19	2.0	19	89	0	58	63	0	0	36	0.95
2790546--2790683	42	3.2	45	75	14	144	27	13	21	37	1.91
2790885--2790923	17	2.3	17	100	0	78	30	17	35	15	1.91
2794262--2794303	20	2.1	20	90	0	66	42	26	14	16	1.86
2795988--2796015	3	9.3	3	100	0	56	35	0	32	32	1.58
2810270--2810322	24	2.2	24	82	0	61	20	56	7	15	1.63
2810282--2810328	24	2.0	24	82	0	58	25	53	6	14	1.65
2814303--2814331	2	14.5	2	100	0	58	48	0	0	51	1.00
2827141--2827291	60	2.5	61	85	2	205	41	19	6	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2827291--2827989	60	11.7	60	78	4	545	32	17	12	37	1.88
2833366--2833448	42	2.0	42	87	0	121	26	10	16	45	1.80
2836933--2836957	12	2.1	12	100	0	50	36	8	8	48	1.62
2841351--2842024	252	2.7	252	85	4	876	34	9	6	49	1.62
2842391--2842448	26	2.2	26	93	0	98	44	17	12	25	1.83
2844860--2844903	22	2.0	23	86	8	65	25	11	11	52	1.70
2847635--2847700	21	3.1	21	72	8	71	46	4	1	46	1.32
2854821--2854855	15	2.2	16	95	5	63	57	0	0	42	0.99
2854820--2854889	21	3.3	21	68	7	61	50	5	0	44	1.26
2856099--2856151	17	3.1	17	86	2	61	41	15	7	35	1.75
2856578--2856631	24	2.3	24	93	3	92	37	7	16	38	1.77
2861593--2861640	17	2.7	18	90	3	71	47	0	2	50	1.12
2861593--2861644	18	2.9	18	91	2	79	46	0	1	51	1.12
2862250--2862326	29	2.6	30	78	10	86	36	0	1	62	1.04
2874061--2874117	29	2.0	29	82	0	69	22	8	14	54	1.67
2884705--2884731	3	9.0	3	100	0	54	66	0	33	0	0.92
2885472--2885550	28	2.7	29	82	3	97	37	2	1	58	1.20
2891733--2891787	15	3.7	15	80	7	67	34	10	21	32	1.89
2891941--2892529	27	21.1	29	66	19	213	32	2	0	64	1.12
2892014--2892407	23	18.0	23	67	25	132	32	2	0	64	1.10
2891928--2892142	59	3.6	60	77	15	223	33	2	1	62	1.18
2892128--2892198	21	3.5	21	85	14	96	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2892128--2892641	20	25.2	20	67	24	135	31	2	0	65	1.10
2891937--2892517	110	5.2	110	86	10	778	32	2	0	64	1.12
2892336--2892401	5	11.0	6	74	20	50	31	0	0	68	0.90
2891937--2892517	217	2.6	220	89	8	867	32	2	0	64	1.12
2892477--2892518	22	2.0	21	86	13	59	21	4	0	73	1.01
2892450--2892616	15	10.1	17	69	19	97	28	2	0	68	1.09
2892515--2892643	49	2.7	49	77	12	133	31	2	0	65	1.11
2891937--2892658	217	3.3	212	77	16	657	32	2	0	64	1.12
2892569--2892644	39	2.1	35	82	9	89	32	1	0	65	1.01
2892588--2892655	30	2.2	33	84	7	88	35	1	0	63	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20