genome.fa.s7.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  18  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8213717--8213776	15	4.2	14	72	18	52	53	1	8	36	1.41
8215370--8215397	2	14.0	2	100	0	56	50	0	0	50	1.00
8228358--8228408	18	2.7	19	76	14	52	54	0	0	45	0.99
8228363--8228433	24	3.0	25	75	19	71	54	0	0	45	0.99
8252922--8252950	13	2.1	14	93	6	51	20	6	3	68	1.27
8282084--8282121	3	12.7	3	100	0	76	0	34	0	65	0.93
8293431--8293464	15	2.3	15	100	0	68	47	0	0	52	1.00
8293646--8294397	378	2.0	374	96	1	1378	37	6	7	48	1.56
8294850--8294922	32	2.2	32	83	7	85	31	5	6	56	1.49
8299241--8299290	24	2.1	24	85	7	66	28	18	16	38	1.91
8312720--8312974	49	5.2	49	88	7	353	15	21	57	5	1.57
8312730--8312974	96	2.5	97	87	9	356	15	21	57	5	1.57
8317128--8317154	14	1.9	14	100	0	54	44	11	7	37	1.68
8348829--8348854	5	5.2	5	100	0	52	42	19	38	0	1.51
8349963--8349994	3	10.7	3	100	0	64	34	0	0	65	0.93
8363643--8363681	21	1.9	21	84	5	53	23	0	12	64	1.28
8366616--8366677	19	3.3	18	74	14	54	61	3	1	33	1.22
8366678--8366725	15	3.3	15	80	13	55	39	4	0	56	1.19
8366885--8366945	18	3.3	18	77	11	61	60	3	1	34	1.23
8366900--8366951	19	2.9	17	81	16	52	59	0	1	38	1.08
8367947--8368018	34	2.1	34	89	5	110	30	12	20	36	1.90
8367961--8368026	34	2.1	32	86	11	91	28	12	19	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8380188--8380222	16	2.1	18	89	10	56	57	8	0	34	1.29
8382141--8382256	30	3.9	29	84	6	153	29	8	18	43	1.80
8382141--8382256	58	2.0	59	86	6	164	29	8	18	43	1.80
8382632--8382722	44	2.0	45	93	2	157	23	14	31	30	1.94
8383412--8383485	36	2.1	36	94	0	130	25	2	36	35	1.71
8400776--8400831	29	2.0	28	85	3	76	33	0	3	62	1.12
8400797--8400838	22	1.9	22	85	0	57	38	0	0	61	0.96
8400784--8400845	29	2.1	29	82	5	72	40	0	1	58	1.08
8400808--8400850	18	2.4	19	80	11	54	44	0	0	55	0.99
8401529--8401577	16	2.9	17	75	9	55	42	2	2	53	1.24
8412608--8412637	3	9.7	3	92	7	51	33	33	0	33	1.58
8421382--8421425	23	1.9	23	81	9	54	45	13	2	38	1.56
8421928--8421952	12	2.1	12	100	0	50	16	0	0	84	0.63
8421923--8421956	17	2.1	16	88	5	50	14	0	2	82	0.79
8436497--8436521	2	12.5	2	100	0	50	52	0	0	48	1.00
8442311--8442338	2	14.0	2	100	0	56	0	50	0	50	1.00
8444680--8444716	3	12.3	3	100	0	74	67	0	0	32	0.91
8452697--8452737	15	2.7	15	84	0	55	21	36	31	9	1.86
8471008--8471034	2	13.5	2	100	0	54	48	0	0	51	1.00
8471650--8471675	2	13.0	2	100	0	52	50	0	0	50	1.00
8479016--8479077	25	2.5	25	74	7	65	41	1	1	54	1.19
8492947--8492977	9	3.4	9	95	0	53	41	9	35	12	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8494933--8495030	49	2.0	50	94	4	173	54	13	20	12	1.71
8498238--8498312	33	2.4	30	86	6	96	10	38	6	44	1.66
8500564--8500633	35	2.0	35	100	0	140	22	8	20	48	1.76
8503347--8503429	40	2.1	40	97	0	157	9	20	19	50	1.75
8503462--8503564	45	2.3	45	84	5	127	12	23	18	45	1.83
8507144--8507203	30	2.0	30	100	0	120	46	23	10	20	1.80
8512720--8512904	39	4.7	39	83	2	210	21	21	17	40	1.92
8516043--8516082	22	1.9	21	85	10	55	40	5	2	52	1.37
8516361--8516388	2	14.0	2	100	0	56	50	0	0	50	1.00
8516705--8516751	8	5.9	8	75	9	51	80	4	14	0	0.85
8516710--8516751	16	2.7	15	85	10	57	78	4	16	0	0.91
8520187--8520225	19	2.1	19	95	0	69	43	5	2	48	1.38
8520305--8520349	22	2.1	21	83	4	54	68	6	2	22	1.24
8520542--8520598	12	4.4	12	73	16	51	75	1	19	3	1.04
8520541--8520599	13	4.5	13	73	23	52	76	1	18	3	1.02
8520541--8520601	28	2.2	27	79	2	68	77	1	18	3	0.99
8520560--8520605	24	2.0	23	82	4	56	73	2	23	0	0.94
8536151--8536233	41	2.0	41	100	0	166	42	14	12	31	1.82
8547653--8547741	30	3.0	30	89	0	133	40	12	12	34	1.80
8555244--8555303	21	2.9	21	65	18	52	21	31	18	28	1.97
8558007--8558075	15	4.8	15	69	16	65	28	1	0	69	0.97
8558020--8558084	22	3.0	22	77	8	89	35	3	0	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8558019--8558084	21	3.1	21	74	8	71	34	3	0	62	1.11
8562306--8562756	203	2.2	200	90	3	694	44	6	6	42	1.57
8562590--8562773	90	2.0	89	85	4	244	46	5	6	41	1.53
8570192--8570227	2	19.0	2	88	11	58	50	0	0	50	1.00
8578497--8578526	2	15.0	2	100	0	60	50	0	0	50	1.00
8599834--8599885	26	2.0	26	96	0	95	28	7	21	42	1.80
8634605--8634666	27	2.3	27	82	0	79	19	1	67	11	1.29
8635147--8635176	16	1.9	16	93	6	53	20	13	20	46	1.83
8636205--8636235	13	2.4	13	100	0	62	16	12	16	54	1.71
8640084--8640211	61	2.1	62	83	5	161	30	25	14	29	1.95
8652333--8652358	3	8.7	3	100	0	52	0	34	0	65	0.93
8655703--8655741	2	19.5	2	100	0	78	51	0	48	0	1.00
8666436--8666486	17	3.0	17	82	0	66	27	21	17	33	1.96
8666421--8666522	17	6.5	17	68	20	51	27	19	16	36	1.93
8666482--8666529	15	2.9	17	75	12	55	27	16	16	39	1.90
8666421--8666537	62	1.9	62	82	3	146	28	17	15	38	1.91
8666497--8666706	48	4.4	48	80	3	219	27	20	14	37	1.92
8666594--8666809	17	13.4	17	64	23	67	27	23	16	32	1.96
8666497--8666706	93	2.2	96	82	2	237	27	20	14	37	1.92
8666710--8666806	37	2.7	36	85	6	126	28	22	16	31	1.96
8666718--8666806	20	4.9	19	68	21	66	29	23	16	30	1.97
8666805--8666836	16	2.0	16	100	0	64	18	12	18	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8666594--8666972	147	2.7	138	80	10	417	27	21	16	34	1.95
8666864--8666916	17	3.2	17	78	10	74	32	24	11	32	1.91
8666821--8666954	31	4.4	31	76	9	132	28	20	15	35	1.94
8666864--8666947	17	5.2	17	70	18	72	28	23	14	33	1.94
8666786--8666972	47	4.0	46	70	22	158	26	20	16	36	1.93
8667101--8667135	11	3.3	11	92	4	54	34	5	0	60	1.21
8676857--8676881	2	12.5	2	100	0	50	52	0	0	48	1.00
8692731--8692756	5	5.2	5	100	0	52	38	0	0	61	0.96
8697573--8697606	14	2.4	14	85	0	50	41	20	17	20	1.91
8731431--8731468	15	2.6	15	79	4	51	55	0	5	39	1.23
8741555--8741752	99	2.0	99	93	0	342	25	20	18	36	1.95
8751605--8751640	2	18.0	2	88	0	54	44	0	2	52	1.15
8751595--8751640	24	1.9	24	95	0	83	39	2	4	54	1.32
8755899--8755935	17	2.2	17	90	4	58	45	2	2	48	1.30
8778521--8778561	19	2.2	19	86	4	57	75	12	7	4	1.16
8782961--8782989	2	14.5	2	100	0	58	51	0	48	0	1.00
8793374--8793399	2	13.0	2	100	0	52	0	50	0	50	1.00
8821663--8821710	23	2.1	23	100	0	96	25	20	12	41	1.87
8822019--8822060	21	2.0	21	100	0	84	42	14	14	28	1.84
8827898--8827934	3	12.3	3	88	0	56	35	2	35	27	1.71
8829859--8829904	6	7.7	6	85	0	65	4	0	47	47	1.21
8834587--8834628	17	2.6	18	82	17	56	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8836375--8836411	19	1.9	19	100	0	74	40	10	16	32	1.83
8840828--8840891	28	2.4	26	75	17	67	53	1	0	45	1.10
8840846--8840912	35	1.9	35	82	11	84	59	2	0	37	1.13
8849231--8849255	2	12.5	2	100	0	50	52	0	0	48	1.00
8860082--8860397	162	1.9	163	88	0	472	33	14	28	23	1.94
8866388--8866417	15	2.0	15	93	0	51	46	16	0	36	1.47
8866733--8866766	2	17.0	2	93	0	59	47	0	0	52	1.00
8868656--8868714	2	31.0	2	90	10	97	0	52	0	47	1.00
8874723--8874774	25	2.0	26	82	10	63	57	1	0	40	1.10
8875433--8875469	17	2.2	17	90	0	56	43	0	2	54	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20