genome.fa.s7.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397260.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_51.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10072460

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  8  of  20  ( 2374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2894125--2894261	71	1.9	73	95	3	251	36	14	16	32	1.89
2894517--2894556	15	2.7	15	88	0	62	57	7	25	10	1.57
2894984--2895028	22	2.0	22	95	0	81	35	13	15	35	1.87
2904673--2904697	3	8.3	3	100	0	50	68	0	0	32	0.90
2910100--2910130	6	5.0	6	96	4	53	48	19	32	0	1.49
2913072--2913148	39	2.0	39	89	0	118	15	19	28	36	1.92
2922582--2922704	37	3.3	37	65	17	108	40	20	8	30	1.81
2922578--2922732	76	2.0	76	98	0	301	40	20	7	32	1.81
2929299--2929338	18	2.2	18	86	0	53	75	0	2	22	0.93
2929648--2929675	14	2.0	14	100	0	56	7	0	28	64	1.20
2932442--2932476	18	1.9	18	88	0	52	74	2	0	22	0.95
2941193--2941372	43	4.1	43	74	9	141	35	23	7	33	1.84
2941222--2941372	21	6.9	22	82	4	146	36	25	7	30	1.83
2941264--2941389	23	5.7	21	82	6	126	35	22	10	31	1.88
2941957--2941993	18	2.1	18	90	5	58	75	0	0	24	0.80
2942147--2942193	14	3.5	13	78	18	51	80	6	0	12	0.88
2942444--2942480	14	2.6	15	83	8	51	72	8	2	16	1.19
2944347--2944404	28	2.1	28	100	0	116	13	32	18	34	1.91
2945045--2945070	4	6.5	4	100	0	52	76	0	0	23	0.78
2959210--2959292	31	2.8	29	76	7	78	59	1	3	36	1.23
2960773--2960811	19	2.0	19	90	5	60	56	0	2	41	1.13
2962163--2962205	4	11.0	4	87	5	61	79	18	0	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2977648--2977691	23	2.0	22	86	4	61	13	9	2	75	1.14
2978065--2978115	14	3.7	14	76	7	52	23	1	3	70	1.14
2978430--2978459	11	2.8	11	95	5	53	50	0	0	50	1.00
2984711--2984743	2	17.0	2	87	6	50	0	48	0	51	1.00
2985638--2985694	25	2.3	26	80	17	68	36	0	7	56	1.27
2992658--2992697	17	2.3	17	91	4	62	32	17	27	22	1.96
2996615--2996641	1	27.0	1	100	0	54	0	100	0	0	0.00
3000741--3000782	22	1.9	21	85	9	57	30	2	2	64	1.19
3000741--3000826	29	2.6	33	77	15	90	32	3	2	61	1.25
3003763--3003837	35	2.1	35	87	0	105	18	14	20	46	1.84
3003775--3003876	35	3.0	34	78	8	93	19	12	19	48	1.81
3008524--3008582	26	2.3	25	85	5	82	37	18	13	30	1.90
3009903--3010011	35	3.1	35	85	0	137	22	14	18	44	1.85
3011626--3011665	20	2.0	20	100	0	80	30	10	25	35	1.88
3011688--3011722	16	2.2	16	89	0	52	57	0	5	37	1.23
3013820--3013858	19	2.1	19	100	0	78	30	12	15	41	1.85
3015276--3015333	30	1.9	30	92	0	98	32	5	5	56	1.43
3016410--3016533	31	4.2	29	71	22	100	66	0	1	30	1.06
3016414--3016871	26	17.0	25	67	22	111	65	0	2	31	1.08
3016514--3016800	10	28.4	10	63	22	59	65	0	2	31	1.07
3016550--3016865	27	11.5	26	72	18	198	64	0	1	33	1.07
3016503--3016865	113	3.2	106	86	11	430	65	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016630--3016696	6	11.0	6	73	20	50	68	0	0	31	0.90
3016550--3016876	113	2.9	109	93	5	539	64	0	1	33	1.07
3016740--3016832	33	2.9	31	76	9	87	68	0	1	30	0.96
3016611--3016864	28	9.1	27	73	17	175	64	0	1	33	1.05
3017021--3017079	15	3.9	15	90	0	82	30	25	8	35	1.86
3018129--3018154	2	13.0	2	100	0	52	50	0	0	50	1.00
3020438--3020475	19	2.0	19	100	0	76	10	26	10	52	1.68
3021310--3021344	18	1.9	18	88	11	54	0	34	28	37	1.58
3024729--3024767	21	1.9	20	84	5	51	51	5	0	43	1.24
3026476--3026511	2	18.0	2	94	0	63	52	0	47	0	1.00
3040915--3041013	39	2.6	37	83	13	123	37	0	5	57	1.21
3042624--3042694	30	2.4	30	78	0	79	33	8	5	52	1.55
3043054--3043106	2	26.5	2	82	0	52	49	7	1	41	1.42
3043061--3043105	18	2.5	18	88	0	63	53	8	0	37	1.32
3043784--3043815	6	5.3	6	100	0	64	31	0	0	68	0.90
3043998--3044036	21	1.9	20	84	5	51	61	12	0	25	1.31
3051393--3051525	34	3.9	34	78	10	112	33	28	12	25	1.92
3051549--3051602	27	2.0	28	85	3	74	33	20	14	31	1.93
3051562--3051637	28	2.8	28	75	2	73	35	17	17	30	1.92
3052211--3052263	21	2.5	21	90	0	88	39	16	16	26	1.91
3052537--3052581	21	2.1	21	88	8	65	26	31	8	33	1.87
3054021--3054071	18	2.9	17	82	14	50	70	0	1	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3054028--3054071	20	2.3	18	88	7	61	70	0	0	29	0.88
3054726--3054804	18	4.4	18	69	6	54	34	10	8	46	1.69
3062566--3062608	23	2.0	22	86	9	61	53	0	13	32	1.41
3062653--3062682	2	15.0	2	100	0	60	50	0	0	50	1.00
3063787--3063819	14	2.4	14	90	10	50	15	0	0	84	0.61
3069657--3069719	27	2.4	26	86	5	83	50	4	0	44	1.23
3070123--3070153	5	6.0	5	96	3	53	22	58	0	19	1.40
3072376--3072426	3	17.0	3	87	0	75	39	33	27	0	1.57
3079037--3079078	12	3.2	13	83	10	50	42	35	19	2	1.64
3080848--3080886	19	2.1	19	90	0	60	33	30	20	15	1.94
3082120--3082181	30	2.1	30	81	6	72	29	11	11	48	1.74
3092693--3092735	15	2.8	15	76	16	52	46	9	0	44	1.35
3094735--3094789	26	2.1	26	83	6	67	65	3	0	30	1.10
3094756--3094802	21	2.2	21	78	14	53	65	6	2	25	1.27
3095845--3095878	15	2.4	14	85	9	50	67	5	14	11	1.39
3123846--3123891	23	2.0	23	86	0	65	15	0	28	56	1.39
3124410--3124481	36	2.0	36	83	2	90	34	22	8	34	1.84
3125670--3125724	27	2.0	27	86	6	76	41	3	16	38	1.66
3138868--3138896	2	14.5	2	100	0	58	51	0	0	48	1.00
3142871--3142909	19	2.1	19	85	0	51	7	12	2	76	1.09
3143702--3143726	2	12.5	2	100	0	50	0	48	0	52	1.00
3149140--3149218	39	2.0	39	100	0	158	39	12	17	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3155717--3155809	9	10.7	9	74	19	56	76	2	2	19	0.99
3155716--3155797	8	10.0	8	79	10	67	76	2	2	18	1.00
3156619--3156677	25	2.4	25	88	0	82	50	8	1	38	1.43
3157936--3157984	23	2.1	23	96	0	89	24	8	10	57	1.59
3159374--3159406	2	16.5	2	100	0	66	0	0	48	51	1.00
3165372--3165423	23	2.3	23	83	3	61	19	5	26	48	1.71
3167298--3167334	15	2.5	15	95	0	65	5	8	35	51	1.55
3171564--3171649	38	2.3	38	87	4	129	34	26	16	22	1.95
3174412--3174457	23	2.0	23	82	0	56	32	32	10	23	1.90
3174126--3174692	296	1.9	296	79	5	646	31	19	16	32	1.94
3174956--3175012	22	2.5	23	88	2	80	33	24	15	26	1.95
3175609--3175634	13	2.0	13	100	0	52	15	15	23	46	1.83
3176994--3177057	33	1.9	33	87	0	92	20	25	14	40	1.89
3180955--3180981	2	13.5	2	100	0	54	51	0	0	48	1.00
3181167--3181191	2	12.5	2	100	0	50	52	0	0	48	1.00
3185093--3185119	2	13.5	2	100	0	54	48	0	0	51	1.00
3193325--3193557	80	2.9	80	90	1	351	38	12	8	40	1.73
3193879--3194043	23	7.2	23	94	0	267	33	20	28	17	1.95
3195525--3195689	72	2.3	72	100	0	330	29	12	14	44	1.81
3201583--3201641	17	3.4	17	76	17	50	44	1	6	47	1.39
3201415--3202050	216	2.9	215	86	2	900	44	5	9	40	1.60
3201982--3202044	22	2.9	21	77	13	65	46	0	7	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3211134--3211170	12	2.8	14	80	16	51	70	0	2	27	1.01
3211732--3211821	46	2.0	46	93	0	153	50	17	14	17	1.79
3211803--3211838	17	2.1	17	100	0	72	36	11	25	27	1.90
3212276--3212304	2	14.5	2	100	0	58	51	0	0	48	1.00
3218866--3218938	21	3.5	21	90	0	110	28	26	21	23	1.99
3226167--3226224	26	2.2	27	82	14	77	20	5	1	72	1.13
3231716--3232377	332	2.0	334	85	3	904	40	8	7	44	1.63
3233272--3233297	13	2.0	13	100	0	52	38	7	7	46	1.61
3233675--3233723	22	2.3	22	82	3	55	38	0	4	57	1.18
3238612--3238641	2	15.0	2	92	0	51	0	46	3	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20