genome.fa.s1547.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10425128

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  51  of  51  ( 6083 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10246873--10246945	20	3.7	20	88	1	103	46	6	24	21	1.76
10247208--10247265	28	2.1	28	93	0	98	41	18	0	39	1.51
10251051--10251310	140	1.9	140	92	0	439	43	13	23	19	1.87
10252255--10252299	18	2.5	19	85	7	58	44	2	2	51	1.26
10254391--10254449	21	2.8	20	73	12	57	33	1	1	62	1.15
10259610--10259650	2	20.5	2	100	0	82	51	0	0	48	1.00
10260016--10260175	39	4.1	39	78	4	162	32	20	27	19	1.97
10264924--10264983	19	3.1	19	72	13	59	48	3	5	43	1.41
10266640--10266674	15	2.3	15	90	0	52	17	37	14	31	1.89
10272829--10272866	15	2.5	16	79	12	53	44	15	31	7	1.75
10278502--10278535	17	1.9	18	88	5	52	55	2	2	38	1.30
10280596--10280659	3	22.0	3	78	12	71	67	1	3	28	1.15
10280598--10280665	32	2.1	32	91	5	111	66	2	4	26	1.25
10280821--10281238	43	9.9	43	74	10	301	27	19	30	22	1.98
10280828--10281075	83	3.0	83	98	1	471	29	19	30	20	1.97
10281071--10281182	46	2.5	43	85	4	134	24	20	30	25	1.99
10281319--10281436	63	1.9	62	86	8	168	40	12	18	27	1.87
10281595--10281712	37	3.3	36	67	15	102	44	11	12	31	1.79
10281521--10281746	69	3.4	65	83	10	255	45	13	11	30	1.78
10281701--10281758	28	2.1	28	93	3	100	44	17	6	31	1.75
10281848--10281958	28	4.1	25	81	11	96	47	13	9	29	1.73
10281863--10281964	28	3.7	29	83	7	115	46	14	8	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10282211--10282314	36	3.0	35	79	9	115	34	12	20	32	1.90
10286275--10286338	32	2.0	32	96	3	121	60	9	14	15	1.57
10286324--10286350	14	1.9	14	100	0	54	51	0	14	33	1.43
10287803--10287836	17	1.9	18	88	5	52	55	2	2	38	1.30
10289895--10289955	3	21.0	3	77	12	65	67	1	3	27	1.16
10289900--10289962	29	2.2	30	88	8	103	66	3	4	25	1.26
10299898--10299960	31	2.0	31	87	0	90	25	9	14	50	1.72
10300252--10300281	9	3.3	9	90	0	51	66	0	13	20	1.24
10304943--10304970	12	2.3	12	100	0	56	42	35	0	21	1.53
10307594--10307781	60	3.1	60	82	3	218	38	6	23	30	1.80
10307913--10307961	18	2.7	18	87	3	62	53	6	0	40	1.26
10308814--10308850	14	2.6	15	83	12	51	45	5	0	48	1.25
10309180--10309296	60	1.9	61	91	1	191	37	5	7	49	1.54
10310930--10310984	18	2.9	19	76	12	60	43	3	1	50	1.30
10313833--10313862	3	9.7	3	92	7	51	66	0	33	0	0.92
10327601--10327638	2	20.0	2	84	10	53	47	0	0	52	1.00
10329068--10329222	42	3.6	44	83	6	210	34	19	21	25	1.96
10329068--10329237	86	2.0	86	82	6	211	34	21	20	24	1.97
10332249--10332668	41	10.3	41	77	5	357	36	19	16	27	1.93
10333475--10333522	22	2.1	24	88	7	73	35	0	6	58	1.23
10340464--10340528	32	2.0	32	82	5	78	32	15	12	40	1.84
10345505--10345648	72	2.0	72	94	2	254	29	4	9	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10359927--10359966	15	2.7	15	80	0	53	30	2	2	65	1.19
10360588--10360644	23	2.5	23	80	5	62	43	10	14	31	1.79
10360896--10360955	23	2.6	23	86	0	75	40	8	18	33	1.80
10361009--10361682	197	3.4	198	88	3	925	30	15	14	38	1.88
10361775--10361821	16	3.0	16	75	12	53	51	0	0	48	1.00
10361772--10361864	30	3.1	30	79	13	86	47	1	1	50	1.15
10361748--10361846	30	3.1	31	80	12	87	47	2	1	49	1.19
10362554--10362647	31	3.0	31	77	9	86	50	1	1	47	1.15
10362554--10362637	31	2.7	32	79	13	88	47	1	1	50	1.16
10362562--10362682	14	8.6	14	68	12	52	49	1	0	47	1.17
10362987--10363059	23	3.2	23	92	0	110	30	17	15	36	1.91
10363011--10363220	87	2.4	87	92	0	348	31	14	13	40	1.84
10363174--10363293	23	5.2	23	90	0	177	36	17	9	36	1.82
10367757--10367866	45	2.4	45	89	0	166	14	59	6	20	1.57
10367760--10367878	15	7.9	15	71	3	78	15	57	6	19	1.60
10367721--10367840	63	1.9	63	81	6	145	14	59	6	20	1.57
10367800--10367878	30	2.6	30	81	0	86	17	56	6	18	1.61
10367820--10367900	30	2.9	27	75	10	81	17	55	8	18	1.66
10367770--10367878	45	2.4	45	87	0	146	16	58	6	18	1.58
10368880--10368933	23	2.3	23	96	0	99	16	18	29	35	1.93
10368946--10368972	14	1.9	14	100	0	54	14	7	14	62	1.51
10375843--10375910	23	3.0	23	76	8	75	44	14	13	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10375917--10375957	12	3.5	12	75	18	50	39	24	17	19	1.92
10375890--10375968	23	3.4	23	89	1	95	41	18	15	24	1.89
10375913--10375968	23	2.4	23	100	0	112	41	21	16	21	1.90
10381589--10381789	44	4.7	43	79	4	185	24	10	22	42	1.85
10381622--10381789	88	1.9	85	83	5	212	23	11	22	43	1.85
10394537--10394578	15	2.8	15	92	0	75	28	28	35	7	1.84
10403147--10403176	14	2.1	14	93	0	51	70	10	0	20	1.16
10408433--10408493	27	2.3	27	97	0	113	31	13	14	40	1.84
10410688--10410730	2	21.5	2	100	0	86	48	0	0	51	1.00
10412176--10412236	24	2.6	23	82	7	70	40	1	4	52	1.33
10412371--10412405	2	18.0	2	94	5	63	48	0	0	51	1.00
10412815--10412874	10	5.8	10	78	7	66	70	1	3	25	1.12
10412815--10412878	11	6.1	10	77	15	58	68	1	3	26	1.13
10412815--10412878	21	3.0	21	84	8	85	68	1	3	26	1.13
10412814--10412883	31	2.2	32	85	12	90	67	1	4	27	1.18
10418858--10418909	27	1.9	27	84	7	70	42	5	7	44	1.57
10423407--10423461	2	28.0	2	96	3	103	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51

The End!