genome.fa.s7905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5168--5232	23	2.7	23	79	13	62	63	3	30	3	1.25
5561--5602	7	6.0	7	100	0	84	28	42	0	28	1.56
8806--8830	2	12.5	2	100	0	50	52	0	0	48	1.00
9016--9083	24	2.8	24	82	8	77	45	16	16	22	1.85
9020--9097	24	3.2	25	77	10	74	44	16	17	20	1.86
17470--17504	18	1.9	18	94	0	61	11	14	20	54	1.70
18548--18581	16	2.1	16	94	0	59	32	8	26	32	1.87
19331--19363	15	2.1	16	88	5	50	51	15	24	9	1.72
28124--28165	17	2.5	17	88	0	66	28	14	26	30	1.95
38206--38323	60	2.0	60	81	6	141	28	16	16	38	1.91
42543--42706	64	2.5	63	82	11	183	26	20	20	32	1.97
52805--52850	24	1.9	24	86	0	65	63	10	8	17	1.51
66884--66930	23	2.0	23	83	0	58	59	19	10	10	1.59
67490--67517	12	2.3	12	100	0	56	42	10	14	32	1.80
67611--67738	63	2.0	63	95	0	229	24	28	9	38	1.86
72685--72735	19	2.6	20	90	3	77	43	23	17	15	1.88
72685--72982	20	14.6	20	77	7	170	38	19	22	19	1.93
72806--72980	40	4.3	40	84	4	224	36	16	25	21	1.94
72830--72982	83	1.8	83	88	0	234	35	17	25	20	1.95
72789--72980	103	1.9	103	89	0	303	35	17	25	21	1.95
73070--73211	6	23.5	6	98	1	275	33	50	16	0	1.45
73915--73970	6	9.5	6	98	1	105	0	16	51	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74048--74091	20	2.2	20	91	0	70	11	18	15	54	1.70
74080--74391	20	15.3	20	83	3	264	20	23	16	39	1.92
74060--74227	80	2.1	80	88	0	246	19	20	16	44	1.87
74048--74350	100	3.0	100	86	1	363	19	22	16	40	1.91
74180--74391	83	2.6	83	85	2	268	20	25	16	37	1.94
74405--74458	20	2.7	20	94	0	90	11	18	18	51	1.74
74445--74495	19	2.6	20	84	3	68	17	17	21	43	1.88
80282--80307	11	2.4	11	100	0	52	38	7	0	53	1.30
90298--90354	24	2.4	24	96	0	105	22	19	26	31	1.98
90676--90752	37	2.1	37	82	4	93	48	2	2	46	1.29
90892--90946	20	2.8	20	94	0	92	23	18	7	50	1.71
92521--92547	2	13.5	2	100	0	54	48	0	0	51	1.00
92796--92840	18	2.5	18	89	7	65	33	11	31	24	1.90
92854--92878	6	4.2	6	100	0	50	48	32	20	0	1.50
93766--93840	36	2.1	36	87	0	105	36	13	13	37	1.84
104374--104650	63	4.4	63	86	3	317	31	20	23	24	1.98
104325--104650	126	2.6	126	78	6	329	29	22	22	25	1.99
105663--105871	69	3.1	69	89	4	307	25	23	26	24	2.00
105663--105867	67	3.0	67	90	2	295	25	23	26	24	2.00
105853--105973	63	1.9	63	86	6	174	27	28	18	26	1.98
105847--105989	63	2.3	63	81	6	164	26	27	18	27	1.98
106513--106631	63	1.9	63	86	6	170	42	6	5	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112675--112702	8	3.5	8	100	0	56	10	14	10	64	1.50
115786--115840	2	27.5	2	89	7	85	52	1	0	45	1.11
116352--116379	2	14.0	2	100	0	56	50	0	50	0	1.00
117377--117494	60	2.0	61	83	11	154	38	17	5	38	1.72
118521--118614	4	25.0	4	69	12	65	51	0	0	48	1.00
118521--118614	6	16.7	6	77	12	65	51	0	0	48	1.00
118521--118614	48	2.0	48	93	0	161	51	0	0	48	1.00
123837--123873	14	2.5	15	84	16	51	62	0	0	37	0.96
126176--126218	2	21.5	2	100	0	86	51	0	0	48	1.00
127243--127295	25	2.1	25	85	0	70	52	0	7	39	1.30
129765--129807	21	2.0	21	86	0	59	30	27	25	16	1.97
129787--129938	67	2.2	68	89	3	227	27	27	26	17	1.98
130243--130314	29	2.5	29	90	0	108	38	9	13	37	1.78
130328--130404	30	2.5	30	91	2	118	40	5	23	31	1.76
130615--130673	22	2.6	23	94	2	102	18	27	30	23	1.98
131852--131936	42	2.0	42	88	0	125	31	22	23	22	1.98
133315--133366	26	2.0	25	85	10	70	44	13	7	34	1.72
134605--134719	56	2.1	56	98	0	221	52	9	10	27	1.67
136086--136129	2	22.5	2	95	4	81	50	0	0	50	1.00
139916--139950	17	2.1	17	89	10	54	40	5	11	42	1.65
140308--140361	22	2.5	22	96	0	99	44	3	33	18	1.67
142048--142154	24	4.5	24	72	0	88	47	15	13	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142048--142156	48	2.3	48	75	0	110	47	15	13	22	1.81
143282--143317	18	2.0	18	88	0	54	30	16	0	52	1.44
144629--144660	7	4.4	7	92	7	55	25	28	34	12	1.92
144630--144676	15	3.3	15	91	5	71	21	25	38	14	1.92
144658--144734	18	4.6	18	81	15	110	11	20	50	16	1.76
144652--144730	31	2.5	31	95	0	149	13	21	48	16	1.81
144630--144676	8	6.5	8	79	20	59	21	25	38	14	1.92
144637--144712	13	5.3	13	77	17	71	17	22	44	15	1.86
146828--146934	24	4.5	24	72	0	88	47	15	13	23	1.81
146828--146936	48	2.3	48	75	0	110	47	15	13	22	1.81
148061--148096	18	2.0	18	88	0	54	30	16	0	52	1.44
149408--149438	7	4.4	7	100	0	62	25	29	32	12	1.93
149436--149512	18	4.6	18	81	15	110	11	20	50	16	1.76
149430--149508	31	2.5	31	95	0	149	13	21	48	16	1.81
149430--149490	13	4.3	13	77	18	68	14	21	47	16	1.82
151603--151709	24	4.5	24	72	0	88	47	15	13	23	1.81
151603--151711	48	2.3	48	75	0	110	47	15	13	22	1.81
152836--152871	18	2.0	18	88	0	54	30	16	0	52	1.44
154178--154209	7	4.4	7	92	7	55	25	28	34	12	1.92
154179--154225	15	3.3	15	91	5	71	21	25	38	14	1.92
154207--154282	18	4.6	18	78	18	101	11	21	50	17	1.77
154179--154225	8	6.5	8	79	20	59	21	25	38	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154201--154275	30	2.5	30	95	2	132	14	21	48	16	1.81
154186--154230	13	3.3	13	90	6	63	17	24	42	15	1.88
158187--158213	6	4.5	6	100	0	54	14	18	37	29	1.91
159723--159752	14	2.1	14	93	0	51	50	10	23	16	1.75
160303--160416	57	2.0	57	91	3	185	34	13	13	39	1.83
160754--160816	23	2.7	23	70	18	58	28	17	14	39	1.89
170686--170735	25	2.0	26	84	4	66	28	6	8	58	1.51
179874--179908	15	2.4	14	86	13	52	54	0	2	42	1.15
196134--196188	28	2.0	28	89	7	85	41	7	3	47	1.49
196401--196537	60	2.3	60	81	6	152	42	5	18	33	1.74
203450--203703	42	6.1	42	79	7	239	24	24	16	35	1.95
205293--205366	24	3.1	24	92	0	130	22	27	32	17	1.97
218002--218085	30	2.7	31	79	3	107	22	16	17	42	1.88
221693--221766	30	2.5	29	82	6	85	41	9	12	36	1.75
226478--226517	20	2.0	21	95	5	73	45	0	5	50	1.23
228844--228903	31	2.0	31	87	6	88	28	15	18	38	1.91
234745--234949	103	2.0	102	88	2	304	37	16	12	34	1.86
238186--238232	2	24.5	2	87	8	71	48	0	0	51	1.00
240145--240184	20	2.0	20	100	0	80	35	10	30	25	1.88
240145--240195	20	2.8	18	88	11	61	39	9	25	25	1.86
247669--247729	24	2.4	26	78	10	72	26	6	3	63	1.34
248169--248221	27	2.0	27	92	0	88	47	28	3	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249572--249598	2	13.5	2	100	0	54	51	0	48	0	1.00
253845--253874	6	4.8	6	92	8	51	83	0	0	16	0.65
261566--261607	11	3.7	11	87	6	66	0	21	54	23	1.44
261568--261604	12	3.2	12	88	3	58	0	18	59	21	1.38
262254--262287	16	2.2	15	89	5	50	67	0	0	32	0.91
265006--265323	105	3.0	105	87	0	458	22	20	17	39	1.92
269637--269661	2	12.5	2	100	0	50	52	0	0	48	1.00
272856--272899	16	2.8	15	83	10	52	34	4	2	59	1.30
274709--274766	28	2.1	28	90	0	89	29	18	18	32	1.96
277155--277189	17	2.1	17	88	0	52	68	2	0	28	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14