genome.fa.s7905.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291306--291344	18	2.2	18	85	0	51	66	0	17	15	1.25
292305--292347	21	2.0	21	95	0	77	30	30	11	27	1.92
296172--296243	35	2.0	36	89	2	110	27	9	22	40	1.85
296203--296365	82	2.0	81	89	1	245	28	13	15	41	1.86
296225--296389	82	2.0	82	82	2	197	32	12	12	43	1.80
301644--302161	258	2.0	253	86	8	703	17	15	22	43	1.87
302946--303255	159	2.0	156	89	3	469	44	12	25	17	1.84
310993--311032	20	2.1	19	86	13	55	67	22	7	2	1.28
313492--313524	15	2.2	15	100	0	66	57	6	6	30	1.47
313771--313817	2	23.5	2	100	0	94	48	0	0	51	1.00
317634--317719	17	5.2	17	83	13	117	18	45	23	12	1.84
317633--317696	18	3.4	19	87	12	80	18	46	23	10	1.80
317673--317709	13	2.8	13	100	0	74	16	48	24	10	1.77
317709--317741	7	4.7	7	100	0	66	15	30	30	24	1.95
317656--317733	31	2.5	30	88	10	113	16	43	24	15	1.86
317741--317822	29	2.8	29	94	0	146	23	9	23	43	1.83
317770--317845	29	2.6	29	83	6	82	28	9	23	38	1.86
324922--324994	17	4.2	17	92	3	119	19	45	23	12	1.84
324922--324994	35	2.1	34	92	2	119	19	45	23	12	1.84
324984--325023	7	5.7	7	100	0	80	15	30	30	25	1.95
325023--325104	29	2.8	29	94	0	146	23	9	23	43	1.83
325052--325127	29	2.6	29	83	6	82	28	9	23	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328055--328097	18	2.6	16	79	20	52	6	39	2	51	1.42
328851--328912	21	2.6	24	80	16	76	53	3	0	43	1.17
331618--331654	19	1.9	19	88	0	56	43	0	0	56	0.99
333778--333842	2	32.0	2	90	3	103	49	3	0	47	1.17
339138--339169	2	16.0	2	100	0	64	50	0	0	50	1.00
339418--339575	55	2.9	54	84	6	196	24	23	20	31	1.98
339569--339963	55	7.2	55	91	0	592	28	27	13	30	1.94
340965--341016	16	3.2	16	88	0	50	13	5	0	80	0.88
354695--354796	53	1.9	52	88	2	150	48	12	23	15	1.80
356768--356850	15	5.5	15	81	8	98	62	0	34	2	1.08
356785--356850	11	5.8	11	76	18	64	63	0	34	1	1.04
356786--356826	20	2.1	19	95	4	73	68	0	31	0	0.90
356889--356951	28	2.2	30	94	5	112	30	0	12	57	1.36
357645--357718	20	3.7	20	71	8	60	48	4	4	43	1.40
359648--359725	23	3.3	23	76	1	75	34	20	17	26	1.95
359732--359949	103	2.1	103	98	0	427	36	23	13	26	1.92
361327--361378	20	2.5	21	90	9	88	19	28	21	30	1.97
365078--365119	11	3.8	11	81	9	50	26	0	2	71	0.98
365186--365243	16	3.4	16	71	17	53	41	5	8	44	1.57
365181--365267	23	4.2	22	66	29	66	39	4	8	48	1.53
365295--365334	17	2.5	15	88	8	53	45	0	2	52	1.14
367690--367797	57	1.9	56	83	9	139	50	13	0	36	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368071--368126	15	3.8	14	81	11	67	3	30	0	66	1.09
368077--368124	19	2.5	19	93	0	78	4	31	0	64	1.12
368284--368368	30	2.9	29	70	10	75	17	29	30	22	1.97
372207--372247	21	2.0	21	90	0	64	43	4	14	36	1.67
374941--374972	15	2.1	16	94	5	57	46	0	18	34	1.49
382707--382751	18	2.6	18	86	10	58	51	4	4	40	1.42
382844--382875	12	2.6	13	85	14	50	46	6	6	40	1.54
384575--384620	18	2.4	19	89	7	67	67	17	0	15	1.24
385097--385124	14	2.0	14	100	0	56	21	21	28	28	1.99
390529--390575	19	2.6	18	83	12	60	53	2	4	40	1.32
390536--390583	19	2.5	20	89	3	71	54	4	4	37	1.39
391916--391969	25	2.2	25	86	6	74	22	12	22	42	1.87
393915--393962	23	2.1	23	92	0	78	37	12	16	33	1.86
394425--394499	23	3.5	22	77	14	84	38	21	5	34	1.76
394425--394494	20	3.3	20	78	9	68	38	21	5	34	1.77
394268--395980	425	4.0	429	93	4	2941	39	12	7	40	1.72
394865--394927	23	2.7	23	92	0	99	38	20	4	36	1.74
395274--395340	22	3.0	23	88	4	109	37	22	5	34	1.79
395713--395771	23	2.6	23	88	0	82	40	16	5	37	1.71
396117--396181	25	2.7	24	92	4	112	38	12	10	38	1.78
398286--399979	385	4.4	391	90	7	2630	30	18	14	36	1.91
398286--399979	191	8.9	196	89	7	2629	30	18	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400060--400101	17	2.5	17	88	0	57	50	11	2	35	1.52
400072--400113	18	2.4	17	92	4	66	52	11	2	33	1.51
401661--401708	18	2.9	16	76	11	51	18	16	2	62	1.42
401937--401997	21	3.0	21	87	4	88	16	29	11	42	1.83
404094--404520	172	2.5	172	83	9	509	27	17	13	41	1.87
407114--407233	41	2.9	42	92	2	197	17	20	17	44	1.87
407434--407497	16	4.2	16	66	18	55	54	1	0	43	1.09
407426--407496	26	2.6	26	80	10	72	52	1	0	46	1.09
407406--407497	45	2.0	45	81	10	105	53	1	0	45	1.07
407747--407816	20	3.5	20	92	0	122	35	14	8	41	1.76
407799--407865	15	4.5	15	84	3	91	34	19	7	38	1.80
407799--407870	30	2.4	30	97	2	137	31	19	6	41	1.78
412088--412139	22	2.4	22	87	6	70	40	25	17	17	1.90
412099--412158	22	2.7	22	89	0	84	40	21	15	23	1.91
413533--413568	2	18.0	2	100	0	72	50	0	0	50	1.00
418659--418698	21	1.9	21	89	0	62	10	25	40	25	1.86
429055--429088	2	17.0	2	100	0	68	50	0	0	50	1.00
430820--430891	31	2.4	29	80	13	83	45	2	1	50	1.25
430837--430911	31	2.4	32	84	6	91	48	6	1	44	1.37
437438--437498	29	2.1	29	96	0	113	42	26	16	14	1.87
438007--438110	37	2.8	38	80	7	99	40	0	8	50	1.40
438117--438154	14	2.6	14	80	19	51	18	0	28	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438262--438341	39	2.1	37	86	11	110	43	0	8	47	1.34
438260--438368	39	3.0	37	80	16	104	43	0	11	44	1.41
438302--438368	34	2.0	34	88	8	102	41	0	14	43	1.46
438394--438499	22	5.0	21	78	14	85	18	0	26	54	1.44
438416--438518	14	7.3	15	75	14	94	20	0	25	54	1.45
438430--438518	7	12.6	7	79	9	92	19	0	25	55	1.43
438560--438710	7	21.7	7	70	4	63	45	29	1	23	1.64
438560--438710	14	10.9	14	69	9	76	45	29	1	23	1.64
438560--438640	20	3.9	21	73	9	76	43	30	1	24	1.62
438751--438782	7	4.6	7	96	0	55	37	0	12	50	1.41
438728--438768	21	1.9	22	85	5	57	26	0	19	53	1.45
438818--438884	7	9.6	7	81	0	53	50	28	0	20	1.48
438823--438886	21	3.0	21	82	13	78	50	26	0	23	1.50
438889--438975	35	2.5	36	78	14	101	47	11	1	40	1.47
439098--439148	22	2.3	22	89	0	75	52	25	1	19	1.56
439143--439245	35	2.9	35	80	16	115	46	10	0	42	1.38
439165--439245	39	2.2	36	86	10	110	46	8	0	44	1.34
439813--439855	20	2.2	20	95	0	77	41	16	4	37	1.69
441110--441157	15	3.2	15	96	0	87	6	16	68	8	1.35
443630--443661	2	16.0	2	100	0	64	50	0	0	50	1.00
446013--446062	26	1.9	26	91	0	82	46	8	8	38	1.63
446121--446160	21	1.9	21	85	10	55	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447054--447167	57	2.0	57	100	0	228	50	5	7	36	1.52
447959--447986	2	14.0	2	100	0	56	50	0	0	50	1.00
450751--450825	22	3.4	22	80	7	89	26	20	22	30	1.98
451771--451825	19	3.1	19	74	15	71	27	20	23	29	1.99
451893--451943	20	2.5	20	93	6	86	29	13	29	27	1.94
452167--452223	18	2.9	19	73	12	53	52	8	7	31	1.59
458442--458621	65	2.8	63	84	5	218	27	17	22	31	1.97
458462--458621	65	2.5	64	90	1	239	27	17	21	33	1.96
460415--460444	15	2.1	15	93	6	53	30	0	0	70	0.88
460415--460449	17	2.1	17	88	0	52	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14