genome.fa.s7905.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1712522--1712554	3	11.0	3	100	0	66	0	33	0	66	0.92
1724086--1724127	20	2.1	20	100	0	84	28	14	35	21	1.92
1727478--1727529	19	2.6	19	85	11	61	25	28	19	26	1.98
1727777--1727819	21	2.0	22	81	4	52	44	16	0	39	1.48
1730813--1730839	14	1.9	14	100	0	54	22	22	22	33	1.97
1731743--1731774	16	1.9	17	93	6	57	50	0	3	46	1.17
1735728--1735828	34	3.1	34	72	25	119	53	18	7	19	1.69
1735728--1735847	62	1.9	62	94	0	213	53	18	10	18	1.71
1735753--1735847	28	3.2	27	70	21	82	54	17	11	15	1.70
1739486--1739552	31	2.2	31	86	7	93	32	14	1	50	1.52
1742876--1743101	103	2.2	103	92	1	382	26	12	23	36	1.91
1743103--1743177	23	3.3	23	79	3	82	25	24	22	28	2.00
1747494--1747711	103	2.1	103	93	0	364	26	12	23	37	1.91
1747721--1747795	23	3.4	22	83	7	82	24	18	24	33	1.97
1752027--1752188	64	2.5	64	76	7	159	34	19	18	27	1.95
1752968--1753185	103	2.1	103	93	0	364	26	12	23	37	1.91
1753192--1753292	23	4.3	23	87	1	139	24	19	22	32	1.97
1757604--1757658	11	5.5	11	68	24	50	32	20	25	21	1.97
1757603--1757666	19	3.4	19	100	0	128	31	20	26	21	1.98
1758509--1758726	103	2.1	103	94	0	382	27	13	22	36	1.92
1758733--1758809	23	3.3	23	77	1	73	25	22	19	32	1.97
1759825--1759875	15	3.2	16	78	10	52	15	3	0	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759848--1759895	13	3.9	13	75	25	50	22	2	0	75	0.91
1759847--1759898	23	2.3	23	86	6	70	23	1	0	75	0.91
1759840--1759898	7	8.0	7	76	10	55	20	3	0	76	0.93
1759847--1759898	15	3.5	14	78	19	52	23	1	0	75	0.91
1760946--1760985	20	2.0	20	95	4	73	35	0	0	65	0.93
1763694--1763724	15	2.1	15	100	0	62	48	19	12	19	1.81
1764117--1764158	14	3.1	14	93	3	68	28	0	26	45	1.54
1764795--1764837	21	2.0	22	82	13	54	48	0	0	51	1.00
1776296--1776359	29	2.2	30	82	2	76	39	4	23	32	1.75
1781130--1781175	21	2.2	21	88	3	67	15	15	28	41	1.87
1781202--1781244	21	2.0	22	90	4	70	25	18	18	37	1.94
1782932--1783002	27	2.6	27	80	10	81	47	21	2	28	1.64
1783097--1783157	29	2.2	27	80	11	70	54	18	1	26	1.53
1783094--1783158	28	2.3	29	75	17	73	53	20	1	24	1.54
1783278--1783347	29	2.4	28	84	11	88	27	1	20	51	1.56
1800007--1800045	20	2.0	20	84	0	51	30	23	10	35	1.88
1800644--1800682	12	3.2	12	82	13	53	64	0	35	0	0.94
1805643--1805689	23	2.0	23	95	0	85	46	14	8	29	1.74
1805646--1805698	23	2.3	23	90	0	79	49	15	7	28	1.71
1805923--1806012	39	2.3	39	84	5	110	28	20	21	30	1.98
1805984--1806043	31	1.9	31	93	0	102	33	16	23	26	1.96
1806904--1806952	24	2.0	24	100	0	98	51	8	20	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1807680--1807836	64	2.5	63	81	5	181	31	19	24	24	1.98
1808230--1808294	30	2.2	31	83	5	80	41	7	21	29	1.81
1808376--1808425	20	2.5	20	93	0	82	22	26	26	26	2.00
1811591--1811713	64	1.9	63	86	4	176	33	18	23	24	1.97
1812274--1812323	20	2.5	20	93	0	82	22	26	26	26	2.00
1814801--1814843	22	2.0	22	90	0	68	32	30	6	30	1.84
1822462--1822506	22	2.0	23	83	8	58	46	15	6	31	1.72
1824616--1824659	20	2.2	20	100	0	88	29	22	4	43	1.73
1827814--1827842	2	14.5	2	100	0	58	51	0	0	48	1.00
1838846--1838873	14	2.0	14	100	0	56	42	0	0	57	0.99
1838827--1838892	22	3.1	22	76	23	63	40	0	0	59	0.98
1838829--1838880	22	2.2	23	83	13	70	40	0	0	59	0.97
1842391--1842489	49	2.0	48	94	5	173	40	2	7	50	1.41
1850039--1850068	14	2.1	14	100	0	60	0	20	0	80	0.72
1854069--1854382	105	2.9	105	90	3	468	24	21	15	38	1.92
1855276--1855340	7	7.8	8	82	16	71	4	12	0	83	0.80
1855281--1855388	44	2.5	43	78	14	121	8	16	0	75	1.04
1855275--1855349	10	7.7	9	76	11	51	8	10	0	81	0.88
1855277--1855370	7	11.2	8	75	19	61	8	13	0	77	0.98
1855273--1855370	9	11.6	9	75	20	88	9	14	0	76	1.01
1855277--1855388	52	2.2	50	82	10	129	8	16	0	75	1.02
1858904--1858937	7	5.0	7	89	3	52	61	0	23	14	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1858902--1858930	14	2.1	14	100	0	58	62	0	20	17	1.33
1865772--1865814	20	2.2	20	87	8	61	69	2	6	20	1.23
1867484--1867682	110	1.8	110	84	4	276	23	20	22	34	1.96
1868777--1868814	14	2.5	15	87	8	51	0	18	2	78	0.86
1868774--1868815	8	5.7	7	84	15	50	0	16	2	80	0.81
1868852--1868890	16	2.4	16	91	0	60	0	5	10	84	0.76
1872433--1872549	60	2.0	60	94	3	209	54	4	20	20	1.61
1875385--1875497	45	2.5	45	91	5	176	37	9	23	30	1.87
1875385--1875511	45	2.8	44	89	7	175	37	9	22	30	1.86
1879164--1879203	21	1.9	21	90	10	64	67	5	7	20	1.34
1886283--1886325	18	2.4	18	88	0	59	23	4	0	72	1.04
1886393--1886422	16	1.9	16	93	6	53	13	3	3	80	0.97
1886402--1886494	31	2.9	31	81	13	93	17	7	1	74	1.11
1892969--1893072	44	2.4	44	85	3	138	38	13	17	30	1.88
1893690--1893765	31	2.5	31	80	2	91	25	7	26	40	1.82
1893744--1893818	33	2.1	35	83	11	91	12	8	37	42	1.71
1893744--1893818	38	2.0	38	89	5	116	12	8	37	42	1.71
1893892--1893977	38	2.2	39	87	2	129	12	10	39	37	1.78
1903585--1903623	18	2.1	19	90	9	62	43	5	0	51	1.24
1923125--1923177	26	2.0	26	96	0	97	22	35	13	28	1.92
1925303--1925347	19	2.4	18	78	10	54	40	22	2	35	1.66
1925308--1925347	20	2.0	20	90	0	62	32	25	2	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1927635--1927675	3	13.7	3	100	0	82	65	0	0	34	0.93
1928815--1928849	12	2.8	13	87	12	56	40	0	0	60	0.97
1930208--1930240	15	2.2	16	89	10	52	27	0	3	69	1.03
1932669--1932708	12	3.2	13	86	6	57	52	0	0	47	1.00
1933565--1933591	14	1.9	14	100	0	54	29	3	7	59	1.42
1938204--1938292	43	2.1	43	93	4	153	23	8	28	39	1.85
1941291--1941599	55	5.6	55	85	4	390	28	25	17	28	1.97
1941293--1941599	165	1.9	165	88	4	467	28	25	16	28	1.97
1942837--1942922	45	1.9	45	80	4	102	16	27	17	38	1.91
1942946--1943164	11	21.8	10	73	20	110	10	14	0	74	1.07
1942946--1943123	21	8.2	22	71	19	99	9	15	0	75	1.04
1942989--1943133	8	17.0	8	69	18	53	8	15	0	75	1.03
1942941--1943151	34	6.5	32	71	21	129	10	14	0	75	1.05
1942941--1943106	74	2.3	73	81	9	187	9	15	0	75	1.04
1943076--1943122	8	5.8	8	97	2	85	10	12	0	76	1.02
1943076--1943145	24	2.8	24	83	10	70	12	11	0	75	1.04
1943045--1943161	16	6.8	17	74	20	77	11	12	0	75	1.06
1963375--1963460	9	9.1	9	70	18	59	79	1	17	2	0.91
1963375--1963473	29	3.5	28	76	15	80	77	1	17	4	0.97
1963397--1963469	30	2.4	29	80	10	85	80	1	15	2	0.89
1963395--1963452	22	2.6	22	86	2	71	79	1	18	0	0.82
1963400--1963471	18	4.1	17	75	22	60	79	1	16	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963399--1963452	7	7.6	7	76	12	56	79	1	18	0	0.82
1965110--1965169	21	2.9	21	100	0	120	35	10	30	25	1.88
1965334--1965359	2	13.0	2	100	0	52	50	0	0	50	1.00
1966184--1966216	16	2.1	16	100	0	66	57	24	12	6	1.57
1966286--1966346	16	3.8	16	95	0	113	55	22	13	8	1.64
1967380--1967435	14	4.3	14	76	17	66	51	23	14	10	1.73
1967373--1967434	24	2.6	24	89	0	97	53	22	12	11	1.71
1970276--1970327	27	1.9	27	88	0	77	57	0	5	36	1.23
1970876--1971246	200	1.9	200	82	5	473	33	13	14	38	1.86
1977287--1977320	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14