genome.fa.s7905.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2828850--2828977	21	6.1	21	77	1	107	21	38	18	21	1.94
2830369--2830405	14	2.6	14	86	0	56	32	2	18	45	1.64
2830542--2830580	20	2.0	20	84	0	51	51	20	17	10	1.74
2830623--2830901	20	14.9	20	74	14	227	26	17	22	33	1.96
2830648--2830839	74	2.6	74	86	6	273	25	18	23	33	1.97
2830583--2830785	94	2.2	94	88	0	289	27	19	21	32	1.97
2830579--2830893	54	5.7	54	74	11	264	25	18	22	34	1.96
2830872--2831141	140	1.9	140	97	0	513	41	15	13	28	1.85
2831201--2831235	18	1.9	18	94	0	61	17	2	25	54	1.57
2834331--2834381	21	2.4	21	100	0	102	25	9	27	37	1.87
2834375--2834421	20	2.3	20	88	0	67	27	21	25	25	1.99
2834389--2834482	20	4.7	20	89	2	100	25	22	17	35	1.95
2834391--2834487	40	2.4	40	84	6	142	24	22	17	35	1.95
2834478--2834533	21	2.6	22	80	5	69	41	14	23	21	1.89
2834750--2834902	54	2.8	54	82	6	168	35	6	1	56	1.37
2834980--2835045	31	2.1	32	88	2	98	39	3	4	53	1.37
2835155--2835243	3	29.3	3	78	17	87	28	1	0	70	0.94
2835159--2835243	19	4.9	17	82	17	104	28	1	0	70	0.95
2835163--2835242	22	3.8	21	79	15	94	28	1	0	70	0.96
2835158--2835243	25	3.8	23	80	18	85	27	1	0	70	0.94
2835162--2835243	13	6.6	12	80	14	87	28	1	0	70	0.95
2836778--2836816	19	2.1	19	95	4	71	15	5	2	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2836856--2836909	3	18.7	3	75	21	53	27	1	0	70	0.98
2837890--2837932	16	2.7	16	96	0	77	30	4	37	27	1.77
2840970--2841052	43	1.9	43	87	0	121	30	28	18	22	1.97
2841194--2841412	116	1.9	116	92	0	366	31	25	20	23	1.98
2841578--2841649	36	2.0	36	100	0	144	25	22	13	38	1.91
2841662--2841821	36	4.4	36	91	0	257	25	20	13	40	1.89
2841807--2841932	35	3.5	35	90	4	182	42	18	9	29	1.81
2843549--2843627	9	7.8	10	73	21	67	29	1	1	68	1.05
2843577--2843626	24	2.1	24	88	7	75	28	2	0	70	0.99
2846189--2846230	15	2.8	15	92	0	66	21	21	38	19	1.94
2849927--2849988	30	2.1	30	81	0	70	37	24	27	11	1.89
2853059--2853120	21	3.0	21	80	7	72	25	16	19	38	1.92
2853090--2853169	21	3.8	21	81	3	88	26	15	15	43	1.85
2853156--2853222	21	3.1	21	78	6	71	25	16	25	32	1.96
2857930--2857976	20	2.3	21	82	7	53	29	19	27	23	1.98
2857959--2858088	54	2.4	54	81	3	145	30	19	22	27	1.98
2858076--2858125	20	2.4	21	76	10	57	26	20	26	28	1.99
2858642--2858681	21	1.9	21	85	10	55	32	20	20	27	1.97
2858668--2858755	23	3.9	23	74	15	85	22	21	26	29	1.99
2861419--2861448	2	15.0	2	100	0	60	50	0	0	50	1.00
2861525--2861582	20	2.7	20	86	10	71	24	22	24	29	1.99
2868226--2868323	23	4.3	23	93	0	160	20	27	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2872314--2872388	23	3.3	23	90	0	123	21	26	28	24	1.99
2873689--2873744	20	2.8	20	86	2	69	33	12	5	48	1.64
2875978--2876050	19	3.9	19	87	3	103	19	31	20	28	1.97
2882437--2882512	37	2.1	36	90	2	116	31	5	18	44	1.72
2882570--2882641	37	1.9	37	97	0	135	30	2	19	47	1.64
2882570--2882627	17	3.2	17	71	21	55	32	3	17	46	1.65
2882737--2882799	14	4.1	14	75	17	54	50	0	4	44	1.23
2887523--2887610	44	2.0	44	93	0	149	30	13	23	31	1.93
2888698--2888802	53	2.0	53	90	3	167	51	4	11	32	1.59
2895506--2895591	44	2.0	44	95	0	154	22	19	23	34	1.96
2909760--2909802	20	2.2	20	86	0	59	32	25	13	27	1.94
2927670--2930181	182	13.9	182	94	1	4395	41	13	17	27	1.87
2927542--2930181	725	3.7	726	94	1	4511	41	13	17	27	1.86
2927542--2930184	906	2.9	906	96	1	4800	41	13	17	27	1.87
2930308--2930364	23	2.4	23	79	2	69	36	15	12	35	1.85
2933639--2933675	15	2.4	17	82	17	53	59	5	0	35	1.20
2935889--2935941	28	1.9	27	92	3	88	47	5	3	43	1.45
2936478--2936611	21	6.5	21	75	4	130	40	17	24	17	1.91
2936600--2936693	20	4.7	20	77	7	82	34	25	15	24	1.95
2936478--2936611	41	3.3	41	97	0	259	40	17	24	17	1.91
2936597--2936674	41	1.9	41	86	0	111	39	23	14	23	1.90
2936478--2936647	82	2.1	82	86	4	236	40	18	21	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936881--2936924	22	2.0	22	90	0	70	20	43	15	20	1.88
2937187--2937224	20	1.9	20	88	0	58	13	15	21	50	1.78
2938540--2938584	18	2.5	18	85	0	63	26	46	15	11	1.79
2939111--2939168	14	3.9	14	79	16	71	48	25	17	8	1.75
2939095--2939185	32	2.8	33	94	3	166	47	23	18	10	1.80
2939057--2939190	19	7.6	19	72	18	92	42	23	20	12	1.87
2939227--2939282	20	2.9	19	84	5	76	17	21	21	39	1.93
2941272--2941425	19	8.6	19	84	12	211	46	17	22	14	1.84
2941363--2941420	14	3.8	14	79	20	71	50	18	20	10	1.76
2941306--2941425	33	3.5	33	94	5	195	47	17	21	13	1.82
2941444--2941501	20	2.9	20	94	0	98	17	22	22	37	1.93
2942473--2942525	23	2.3	23	84	9	72	24	16	20	37	1.93
2944986--2945115	19	7.7	19	64	25	85	42	20	23	14	1.88
2944987--2945117	33	4.0	32	84	9	176	41	19	22	16	1.90
2944987--2945118	66	2.0	65	95	1	237	40	19	22	16	1.91
2945115--2945186	19	4.1	18	75	20	71	13	19	20	45	1.84
2945142--2945168	14	1.9	14	100	0	54	7	25	29	37	1.83
2945291--2945326	14	2.6	14	86	4	56	44	25	0	30	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!