genome.fa.s7905.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465816--465897	43	1.9	43	92	0	137	30	31	15	21	1.95
465936--466138	110	1.8	109	88	4	309	36	21	17	24	1.95
466627--466698	36	2.0	36	88	0	108	26	20	12	40	1.88
466681--466759	30	2.7	29	82	5	97	39	18	10	31	1.84
466567--466792	96	2.4	96	82	5	262	32	19	11	37	1.86
466790--466902	40	2.9	38	84	8	140	44	15	13	27	1.83
468754--468783	15	2.1	14	93	6	51	30	0	0	70	0.88
468754--468788	17	2.1	17	88	0	52	28	0	0	71	0.86
477771--477894	46	2.7	46	91	1	187	30	17	20	30	1.96
480473--480531	21	2.7	22	78	5	75	27	33	23	15	1.95
484201--484251	16	3.0	16	76	15	57	29	17	23	29	1.97
484279--484348	16	3.7	20	77	16	85	25	18	30	25	1.98
486299--486391	20	4.6	20	83	2	132	13	22	23	39	1.90
486274--486391	61	1.9	61	100	0	236	16	21	23	38	1.93
486319--486437	41	2.9	41	89	8	165	18	21	22	37	1.94
486384--486466	19	4.1	20	73	11	62	21	16	24	37	1.94
486383--486475	22	4.4	22	77	9	95	20	18	24	36	1.95
486558--486629	6	12.0	6	95	0	126	36	16	0	47	1.47
486628--486666	6	6.5	6	100	0	78	33	51	15	0	1.44
487312--487380	19	3.5	19	67	11	57	39	21	18	20	1.93
487312--487398	41	2.1	41	91	4	140	37	22	18	20	1.94
487390--487446	21	2.7	21	91	0	96	28	28	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487435--487490	20	2.8	20	91	0	85	42	23	21	12	1.86
490774--490825	20	2.6	20	93	0	86	36	13	11	38	1.81
508342--508395	28	1.9	28	85	7	74	44	7	0	48	1.31
508378--508411	13	2.5	14	95	4	61	35	0	0	64	0.94
508791--508879	20	4.1	21	68	22	60	38	3	7	50	1.48
509487--509575	27	3.2	27	75	12	83	49	8	2	39	1.47
509475--509612	54	2.6	52	79	12	145	55	9	1	34	1.41
510159--510220	24	2.6	24	92	0	106	17	30	33	17	1.94
518482--518563	29	2.8	29	88	1	119	31	14	10	42	1.81
519851--519880	15	2.0	15	93	0	51	56	30	0	13	1.37
523195--523281	29	3.0	29	86	1	120	32	14	11	41	1.82
525267--525443	29	6.2	29	82	2	160	32	1	8	57	1.39
525297--525408	56	2.0	57	83	1	145	35	1	8	54	1.40
526126--526167	22	2.0	22	90	4	68	42	26	0	30	1.55
528256--528437	43	4.2	42	73	9	134	26	19	20	32	1.97
528238--528437	86	2.3	86	78	12	196	26	20	21	32	1.97
528776--528884	21	5.2	21	84	2	103	0	40	18	40	1.57
539444--539474	15	2.1	15	100	0	62	25	12	22	38	1.90
539970--540123	31	4.9	31	85	6	179	27	15	20	35	1.93
539970--540104	63	2.2	62	87	4	191	26	15	20	37	1.93
539970--540123	63	2.5	62	84	7	188	27	15	20	35	1.93
550411--550460	25	2.0	25	100	0	100	36	8	12	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552643--552716	3	25.0	3	91	2	51	45	0	0	54	1.00
552648--552716	6	11.5	6	90	0	57	47	0	0	52	1.00
554009--554065	22	2.7	21	75	20	55	29	1	1	66	1.12
558205--558236	15	2.1	15	94	0	55	28	18	6	46	1.73
565577--565632	1	56.0	1	81	0	67	91	1	7	0	0.50
565574--565630	11	5.2	11	91	4	89	89	1	8	0	0.55
566910--567139	115	2.0	114	90	0	361	35	14	20	29	1.92
567826--568449	113	5.5	113	95	1	1126	39	15	17	28	1.89
568351--568488	73	1.9	73	86	3	197	35	16	14	33	1.89
568238--568635	186	2.1	186	88	0	573	36	14	17	30	1.90
568351--568522	73	2.4	73	83	2	193	36	16	15	31	1.90
568133--568747	299	2.1	298	88	1	910	36	15	17	30	1.91
568616--568680	20	3.3	20	66	12	53	43	10	18	27	1.83
568424--568796	113	3.4	109	83	7	462	36	14	17	30	1.90
568717--569009	124	2.4	124	84	7	361	42	15	18	23	1.89
569154--569211	3	19.3	3	87	7	73	41	0	0	58	0.98
569147--569211	15	4.4	15	84	9	89	40	0	0	60	0.97
569147--569211	18	3.8	17	82	11	80	40	0	0	60	0.97
573593--573677	30	2.8	31	80	10	95	35	9	4	50	1.56
593537--593585	19	2.6	19	93	0	89	18	32	6	42	1.75
593979--594084	51	2.1	51	96	3	196	28	34	9	27	1.88
602810--602859	25	2.0	25	100	0	100	36	8	12	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610184--610373	60	3.2	60	81	3	168	40	6	22	30	1.80
611530--611603	34	2.1	35	92	2	123	29	0	25	44	1.54
623528--623570	21	2.0	21	90	0	68	39	4	20	34	1.74
626463--626625	84	2.0	83	84	8	215	29	25	19	25	1.99
626529--626580	19	2.7	19	100	0	104	26	34	21	17	1.95
634001--634044	21	2.1	21	82	0	52	6	43	18	31	1.76
635132--635291	65	2.5	66	84	5	202	30	24	19	26	1.98
640820--640861	20	2.0	20	86	9	57	21	33	21	23	1.97
666580--666633	22	2.5	22	81	6	65	53	16	0	29	1.43
666781--666824	19	2.3	19	84	0	52	31	11	2	54	1.48
666789--666825	19	1.9	19	88	0	56	32	8	2	56	1.43
666914--666959	24	2.0	23	91	4	74	34	21	26	17	1.95
666973--667026	23	2.3	24	83	6	74	27	24	27	20	1.99
667260--667302	22	2.0	22	95	0	77	34	23	4	37	1.76
667875--667924	21	2.5	20	80	9	57	36	26	8	30	1.85
675285--675488	102	2.0	101	91	8	335	38	16	12	32	1.86
675960--676018	19	2.8	20	80	10	57	16	27	32	23	1.96
681642--681676	18	1.9	18	94	0	61	20	22	34	22	1.97
682727--682775	15	3.2	15	82	5	62	32	20	8	38	1.82
684275--684333	29	2.0	29	100	0	118	23	13	13	49	1.78
688727--688785	29	2.0	29	100	0	118	23	13	13	49	1.78
691203--691283	30	2.7	30	92	3	128	27	7	23	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691338--691383	20	2.3	20	85	3	58	39	0	23	36	1.55
693153--693240	20	4.7	20	79	13	107	45	3	19	31	1.67
693153--693240	34	2.4	38	81	11	103	45	3	19	31	1.67
696057--696103	22	2.1	22	96	0	85	29	21	36	12	1.91
696133--696176	23	1.9	23	100	0	88	9	25	40	25	1.84
696134--696183	23	2.2	23	92	0	82	12	24	40	24	1.88
696638--696995	171	2.1	173	90	2	560	39	5	18	37	1.72
698724--698760	6	6.2	6	100	0	74	16	0	64	18	1.29
699260--699723	8	61.8	8	71	19	297	50	6	3	40	1.44
699257--699786	8	69.2	8	70	20	154	50	5	3	40	1.42
699291--699730	37	11.9	37	88	7	463	49	6	3	40	1.45
699274--699626	39	9.2	39	87	9	469	50	6	3	40	1.44
699347--699656	23	14.1	21	70	21	174	50	6	3	40	1.45
699274--699686	23	18.3	22	71	18	139	50	6	3	40	1.44
699260--699730	59	8.1	60	73	18	324	50	6	3	40	1.44
699234--699777	14	41.7	14	68	22	244	50	5	3	40	1.44
699423--699786	74	4.9	73	84	9	298	50	5	3	40	1.42
699518--699777	23	10.4	27	72	18	120	50	5	3	40	1.42
703111--703157	18	2.6	18	100	0	94	23	36	14	25	1.93
704547--704576	15	2.0	15	100	0	60	13	20	26	40	1.89
704680--704710	16	1.9	16	93	0	53	25	25	16	32	1.96
706409--706446	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710876--711030	20	7.7	20	73	13	104	36	24	18	21	1.95
710876--711029	41	3.8	40	79	7	141	36	24	18	21	1.95
711948--712039	21	4.5	21	80	10	91	19	20	23	35	1.95
716317--716388	12	5.9	12	72	23	53	27	0	1	70	0.95
716321--716382	3	21.7	3	75	21	62	30	0	1	67	1.00
716319--716379	17	3.4	17	78	14	61	29	0	1	68	0.99
720802--720903	15	6.9	14	75	18	66	75	5	15	2	1.12
720801--720903	25	4.2	25	74	16	90	75	5	15	2	1.11
720810--720892	30	2.8	29	78	8	87	75	4	18	1	1.04
720835--720891	21	2.7	21	78	13	62	75	3	19	1	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14