genome.fa.s7905.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2946335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1644 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021540--1021574	15	2.2	16	90	5	54	14	2	0	82	0.77
1029972--1030022	23	2.2	23	85	0	66	39	9	21	29	1.85
1030121--1030180	23	2.6	23	83	0	75	41	10	16	31	1.81
1029960--1030483	158	3.3	158	93	1	872	41	13	13	31	1.84
1030279--1030327	23	2.1	23	92	0	80	36	12	18	32	1.88
1030698--1030737	18	2.2	18	95	0	71	7	40	0	52	1.30
1033176--1033842	182	3.7	180	88	2	962	27	16	13	43	1.85
1037339--1037454	2	62.0	2	66	13	59	50	0	0	49	1.00
1038113--1038223	41	2.8	39	82	6	143	27	17	7	48	1.73
1041951--1041995	18	2.5	18	100	0	90	35	0	17	46	1.49
1043915--1043957	20	2.2	20	86	0	59	37	16	11	34	1.85
1054239--1054281	20	2.2	20	86	0	59	37	16	11	34	1.85
1058020--1058060	21	2.0	21	90	9	66	17	29	31	21	1.96
1062602--1062658	16	3.3	16	75	17	51	64	1	21	12	1.35
1062610--1062657	20	2.4	20	100	0	96	64	0	20	14	1.28
1063411--1063453	21	2.0	22	86	4	61	23	13	27	34	1.93
1064263--1064291	13	2.1	14	93	6	51	51	0	13	34	1.42
1070319--1070392	37	2.0	35	82	12	87	45	5	1	47	1.34
1075417--1075448	10	3.2	10	100	0	64	9	18	62	9	1.52
1091052--1091076	12	2.1	12	100	0	50	32	16	12	40	1.84
1105178--1105223	17	2.7	17	96	0	83	43	21	4	30	1.72
1107718--1107750	16	2.1	16	88	5	50	24	24	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107726--1107770	20	2.5	18	80	19	58	24	24	11	40	1.87
1107739--1107776	20	1.9	20	100	0	76	23	28	10	36	1.88
1108265--1108311	7	7.3	7	77	18	57	27	2	14	55	1.51
1108263--1108315	19	2.8	19	97	0	97	26	3	16	52	1.61
1112889--1112984	21	4.6	21	74	3	86	26	15	19	38	1.92
1112889--1112980	42	2.2	42	82	0	112	27	14	20	38	1.91
1120511--1120557	21	2.3	21	88	3	69	12	14	27	44	1.82
1122052--1122115	24	2.7	24	79	11	78	29	17	20	32	1.95
1128411--1128463	24	2.2	24	96	0	97	26	11	24	37	1.89
1136492--1136535	21	2.2	20	83	4	52	75	2	4	18	1.09
1144127--1144176	22	2.3	22	86	6	66	56	0	2	42	1.11
1144443--1144592	60	2.5	58	80	14	146	33	16	4	46	1.66
1144744--1144871	58	2.2	60	78	7	145	42	4	17	35	1.70
1148876--1148951	32	2.4	32	89	6	127	31	9	15	43	1.79
1150141--1150284	64	2.2	64	84	4	175	34	23	18	24	1.96
1150934--1150978	23	2.0	23	95	0	81	17	28	24	28	1.97
1150935--1150984	23	2.2	23	88	0	73	20	28	22	30	1.98
1150935--1150992	23	2.5	23	85	0	62	20	25	20	32	1.97
1157037--1157157	63	1.9	64	84	5	165	33	23	18	24	1.96
1157840--1157898	23	2.6	23	94	0	100	18	28	27	25	1.98
1158945--1159465	258	2.0	258	97	0	988	35	11	14	38	1.83
1159976--1160055	26	3.2	26	62	31	64	37	23	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159978--1160082	50	2.1	50	92	0	174	38	23	6	31	1.81
1161446--1161489	20	2.2	20	87	0	61	22	25	11	40	1.87
1162998--1163042	17	2.6	17	82	0	63	51	6	0	42	1.28
1166783--1166879	31	3.3	29	77	14	101	38	10	11	40	1.75
1167273--1167345	30	2.4	30	93	0	119	32	9	5	52	1.57
1168159--1168212	26	2.1	26	100	0	108	33	29	14	22	1.94
1168159--1168220	26	2.5	25	92	7	101	38	25	12	22	1.90
1171480--1171525	23	1.9	25	86	8	69	26	6	8	58	1.52
1172937--1172967	2	15.5	2	100	0	62	51	0	0	48	1.00
1173972--1174022	22	2.3	22	96	0	93	41	9	17	31	1.82
1177646--1177685	19	2.1	19	100	0	80	45	15	10	30	1.78
1179101--1179150	20	2.5	19	81	9	55	56	8	8	28	1.57
1179584--1179813	40	5.8	40	78	10	256	41	24	15	18	1.89
1179584--1179811	20	11.4	20	76	11	191	41	24	15	18	1.90
1179605--1179811	60	3.5	60	80	6	249	41	24	15	18	1.89
1180337--1180376	19	2.0	20	86	13	57	10	15	25	50	1.74
1182077--1182197	63	1.9	63	80	6	138	21	12	31	34	1.90
1182309--1182346	4	9.5	4	88	0	58	26	0	2	71	1.00
1182546--1182608	21	3.0	21	76	0	63	17	39	23	19	1.92
1183931--1184107	68	2.6	67	86	9	218	28	2	16	52	1.56
1184016--1184055	14	2.9	14	80	0	53	30	0	22	47	1.52
1183962--1184107	68	2.2	64	91	4	229	29	1	18	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1184161--1184209	20	2.5	20	93	0	80	38	22	18	20	1.93
1184587--1184621	6	5.8	6	86	0	52	17	2	20	60	1.49
1184580--1184620	18	2.3	18	95	0	73	17	2	24	56	1.53
1186660--1186705	23	2.0	24	91	4	76	6	21	13	58	1.57
1186889--1186943	24	2.3	24	87	0	74	36	14	18	30	1.91
1187055--1187088	12	2.8	12	90	0	50	14	0	29	55	1.40
1187683--1187721	15	2.5	15	83	4	51	66	0	5	28	1.12
1187861--1187907	18	2.6	18	82	3	58	31	14	23	29	1.95
1187881--1187991	19	5.7	20	83	4	120	30	11	21	36	1.89
1187882--1187975	39	2.4	40	85	5	122	32	11	19	36	1.88
1187976--1188053	20	3.9	20	86	0	102	15	16	28	39	1.89
1187920--1188065	20	7.4	19	83	6	98	21	14	25	39	1.91
1187999--1188172	40	4.3	40	77	12	142	22	16	24	36	1.94
1188059--1188166	20	5.3	20	76	2	108	25	16	22	36	1.94
1187979--1188172	60	3.2	59	78	14	159	21	15	24	38	1.92
1192736--1192763	4	7.0	4	100	0	56	50	0	0	50	1.00
1195663--1195703	19	2.2	19	83	16	50	34	2	14	48	1.57
1197198--1197226	14	2.0	15	93	6	51	20	6	10	62	1.50
1197385--1197414	16	1.9	16	93	6	53	56	6	6	30	1.51
1197880--1197923	21	2.1	21	83	8	54	13	59	2	25	1.46
1204719--1204759	12	3.0	14	86	13	59	19	7	9	63	1.48
1205344--1205385	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206580--1206619	21	2.0	21	90	5	64	22	22	15	40	1.91
1210479--1210586	54	2.0	54	92	1	182	45	10	13	30	1.77
1211450--1211549	33	3.2	31	82	10	89	35	13	13	39	1.83
1211476--1211549	33	2.2	33	90	0	112	36	13	12	37	1.82
1214893--1214932	2	20.5	2	94	5	73	52	0	0	47	1.00
1217706--1217768	23	2.7	23	85	4	83	41	20	14	23	1.89
1217845--1217885	16	2.6	16	88	3	57	34	21	7	36	1.82
1219309--1219349	22	2.0	21	85	9	57	31	26	0	41	1.56
1221265--1221313	18	2.9	17	77	11	57	46	2	0	51	1.12
1222567--1222618	12	4.4	12	77	18	56	32	0	1	65	1.04
1222580--1222736	64	2.5	65	91	6	270	40	0	1	57	1.14
1223834--1223872	16	2.4	17	82	8	53	46	0	0	53	1.00
1223986--1224143	21	7.8	20	72	7	86	38	24	17	18	1.93
1224111--1224339	20	11.4	20	80	5	221	37	25	17	19	1.93
1225039--1225085	24	2.0	24	87	8	69	25	14	21	38	1.92
1225260--1225284	12	2.1	12	100	0	50	72	0	28	0	0.86
1227562--1227795	72	3.3	72	81	10	288	46	17	22	14	1.83
1227548--1227817	105	2.6	102	91	7	375	46	17	22	13	1.83
1227548--1227817	53	5.1	52	89	8	406	46	17	22	13	1.83
1227529--1227822	72	4.2	72	75	16	274	45	18	22	14	1.85
1227794--1227909	53	2.2	52	84	3	151	19	23	18	38	1.93
1227813--1227929	53	2.2	53	96	1	218	14	23	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227832--1227929	19	5.4	19	82	13	134	15	22	16	45	1.84
1228036--1228072	14	2.6	14	91	0	65	45	21	0	32	1.52
1229998--1230156	19	8.6	18	81	11	146	46	23	18	10	1.81
1229998--1230156	38	4.3	37	80	10	164	46	23	18	10	1.81
1229998--1230151	52	2.8	55	86	7	190	47	24	18	10	1.79
1230152--1230274	33	3.7	33	90	2	176	8	17	27	45	1.79
1230152--1230242	14	5.4	18	71	23	81	7	17	28	46	1.76
1230200--1230256	14	3.7	14	72	20	51	8	22	24	43	1.81
1230371--1230681	91	3.4	92	95	3	567	45	18	13	22	1.84
1232348--1232411	20	3.2	20	82	4	92	46	15	25	12	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14