genome.fa.s7916.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  13  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2905849--2905911	3	21.0	3	79	12	67	38	0	1	60	1.07
2906711--2906737	14	1.9	14	100	0	54	0	29	59	11	1.32
2921169--2921204	17	2.1	17	89	0	54	22	16	27	33	1.95
2924074--2924131	30	1.9	30	86	6	82	44	1	6	46	1.40
2927687--2927798	60	1.9	59	88	5	172	33	14	17	34	1.90
2928604--2928654	9	5.4	9	84	13	59	74	9	1	13	1.15
2928604--2928654	19	2.7	18	85	11	59	74	9	1	13	1.15
2928891--2928992	43	2.4	42	88	6	150	27	21	29	21	1.99
2929194--2929241	23	2.1	23	88	0	69	35	12	18	33	1.89
2929959--2929995	18	2.1	18	89	0	56	51	10	5	32	1.60
2930199--2930262	22	2.8	23	85	4	85	39	18	7	34	1.80
2930628--2930690	23	2.7	23	90	0	90	38	19	6	36	1.77
2933226--2933891	183	3.7	184	95	1	1200	34	15	14	35	1.89
2935344--2935426	3	28.0	3	76	2	78	24	34	6	34	1.80
2935348--2935438	12	7.4	12	80	8	76	21	35	7	35	1.83
2935348--2935430	27	3.1	27	84	1	114	22	34	7	34	1.82
2936988--2937683	193	3.6	197	93	5	1211	31	15	15	36	1.90
2936865--2937683	386	2.2	370	90	8	1282	32	15	15	36	1.89
2937345--2938019	340	2.0	336	93	4	1177	32	15	15	36	1.89
2937682--2938180	192	2.6	197	92	5	838	32	15	15	37	1.88
2938261--2938305	19	2.4	19	92	0	72	57	8	2	31	1.41
2942470--2942518	20	2.7	17	80	17	62	20	18	8	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2942478--2942515	20	1.9	20	94	0	67	18	15	10	55	1.68
2942641--2942687	20	2.3	21	86	13	71	17	17	10	55	1.69
2942755--2943189	222	1.9	226	90	6	699	38	7	8	45	1.63
2946140--2946215	37	2.1	37	94	0	134	53	7	19	18	1.68
2954506--2954557	22	2.2	24	90	6	81	5	25	0	69	1.10
2965222--2965261	15	2.9	14	85	14	57	50	12	17	20	1.78
2967562--2967601	21	1.9	21	94	0	71	30	15	7	47	1.72
2967596--2967694	33	3.0	33	94	1	164	33	7	14	45	1.71
2967680--2967729	13	3.8	13	75	15	57	34	4	12	50	1.58
2968132--2968185	14	3.6	14	80	11	63	31	12	12	42	1.81
2968151--2968182	16	2.0	16	100	0	64	37	12	12	37	1.81
2968276--2968307	16	2.0	17	88	11	50	43	21	21	12	1.86
2968923--2968953	16	1.9	16	93	0	53	35	3	0	61	1.12
2975371--2975423	27	2.0	27	100	0	106	60	11	0	28	1.31
2975371--2975413	14	3.1	14	81	18	63	58	11	0	30	1.34
2975374--2975428	13	4.2	13	82	15	69	61	10	0	27	1.29
2975550--2975592	22	2.0	22	81	9	52	48	0	4	46	1.22
2981926--2981982	15	3.9	15	81	4	80	43	7	17	31	1.76
2981965--2982013	20	2.5	20	93	3	82	44	10	10	34	1.72
2982306--2982409	28	3.6	28	78	19	115	54	1	0	43	1.11
2983536--2983591	24	2.3	23	84	3	67	46	1	3	48	1.30
2984035--2984127	21	4.6	20	77	4	96	39	17	23	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2984032--2984127	41	2.3	41	92	0	165	40	16	22	19	1.91
2984054--2984188	41	3.3	41	79	6	105	38	19	20	21	1.94
2984116--2984210	20	4.7	20	77	2	82	34	23	17	24	1.96
2984398--2984441	22	2.0	22	95	0	79	20	40	15	22	1.90
2984705--2984742	20	1.9	20	88	0	58	13	15	21	50	1.78
2986056--2986100	18	2.5	18	85	0	63	26	42	15	15	1.87
2986569--2986635	20	3.4	20	81	2	73	38	23	22	14	1.92
2986624--2986681	14	3.9	14	79	16	71	48	25	17	8	1.75
2986608--2986698	32	2.8	33	94	3	166	47	23	18	10	1.80
2986569--2986703	19	7.6	19	71	19	85	42	23	20	12	1.86
2986715--2986772	14	3.9	14	79	16	71	8	17	25	48	1.75
2986710--2986788	32	2.4	33	95	2	142	10	18	24	46	1.80
2986729--2986846	20	6.4	19	77	11	95	13	19	24	42	1.87
2986710--2986846	39	3.9	37	78	10	105	12	18	24	43	1.85
2988688--2988723	14	2.6	14	90	0	54	30	0	22	47	1.52
2989276--2989311	14	2.6	14	90	0	54	30	0	22	47	1.52
2991636--2991681	23	2.0	23	86	0	65	28	21	19	30	1.98
2994128--2994248	19	6.7	19	71	18	62	44	20	23	10	1.83
2994149--2994244	34	2.9	33	95	3	174	44	18	23	12	1.84
2994244--2994286	20	2.2	20	87	4	61	16	18	23	41	1.89
2994423--2994459	14	2.6	14	91	0	65	45	24	0	29	1.53
2995794--2995860	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2995794--2995916	42	2.9	41	80	7	113	22	17	36	22	1.95
2997893--2997954	20	3.2	20	81	4	72	43	17	24	14	1.86
2997891--2998074	33	5.1	37	80	9	150	42	21	22	13	1.87
2997891--2998074	19	10.1	19	77	13	163	42	21	22	13	1.87
2998070--2998133	19	3.4	19	82	2	67	12	17	26	43	1.84
2998081--2998133	19	2.8	19	85	0	79	13	18	24	43	1.86
2998648--2998741	20	4.7	20	80	2	89	23	18	24	34	1.96
2998730--2998804	21	3.6	21	78	3	89	17	25	18	38	1.92
2998669--2998803	41	3.3	41	81	4	130	20	21	20	37	1.94
2998730--2998822	20	4.6	20	76	6	80	18	24	18	38	1.92
2998730--2998825	41	2.3	41	94	3	167	18	23	17	39	1.92
3002486--3002520	18	1.9	18	88	0	52	54	0	2	42	1.15
3005921--3006166	119	2.1	120	97	1	469	42	12	11	32	1.79
3009219--3009253	18	1.9	18	88	11	54	51	8	2	37	1.47
3012987--3013117	59	2.2	59	83	6	167	43	3	20	32	1.70
3013005--3013090	29	2.9	30	67	20	72	41	2	22	33	1.66
3013005--3013130	59	2.1	59	85	2	164	42	3	19	33	1.70
3017333--3017366	18	1.9	18	88	5	52	23	11	14	50	1.76
3020611--3020670	21	2.8	21	76	11	68	25	31	23	20	1.98
3022166--3022199	16	2.2	16	89	5	52	14	5	20	58	1.57
3022173--3022204	16	2.1	16	94	5	57	9	6	18	65	1.42
3022854--3022895	22	1.9	22	85	0	57	30	30	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3024275--3024339	23	2.8	23	83	0	85	23	15	26	35	1.94
3025872--3025908	15	2.5	15	90	0	56	48	2	0	48	1.15
3026381--3026481	29	3.6	29	77	12	111	45	1	3	48	1.32
3026394--3026472	26	2.9	27	81	12	106	43	2	3	50	1.33
3026562--3026620	23	2.6	23	86	2	75	40	3	0	55	1.16
3026610--3026639	15	1.9	16	93	6	53	40	0	0	60	0.97
3026937--3026964	2	14.0	2	100	0	56	50	0	0	50	1.00
3027003--3027049	17	2.9	17	75	18	55	31	0	10	57	1.33
3029250--3029275	7	3.7	7	100	0	52	88	0	0	11	0.52
3031985--3032021	19	1.9	19	89	10	58	27	5	16	51	1.66
3032699--3032744	25	1.9	23	86	8	65	50	2	0	47	1.13
3033427--3036896	347	10.0	347	97	0	6494	29	16	18	35	1.93
3040363--3040411	24	2.0	24	96	0	89	40	12	10	36	1.77
3043562--3043664	51	2.0	50	90	1	161	43	14	6	34	1.72
3043567--3043678	50	2.2	51	85	1	145	45	13	7	33	1.71
3044080--3044128	20	2.5	20	78	15	57	51	2	0	46	1.12
3044028--3044319	151	2.0	148	92	6	490	48	10	2	38	1.49
3044229--3044279	20	2.6	21	75	12	63	54	1	0	43	1.11
3044229--3044285	20	2.8	20	72	15	55	54	1	0	43	1.10
3046287--3046332	23	2.0	23	83	8	58	39	4	2	54	1.32
3046543--3046688	73	2.0	73	100	0	292	27	15	17	39	1.90
3055569--3055603	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3058324--3058374	18	2.8	18	96	0	93	58	11	0	29	1.33
3058650--3058738	7	12.9	7	74	11	58	41	7	1	49	1.39
3058661--3058711	20	2.5	21	87	3	77	47	7	0	45	1.32
3058661--3058738	27	2.9	28	73	9	81	43	8	1	46	1.43
3058665--3058738	34	2.2	34	81	11	89	43	9	1	45	1.44
3061921--3061982	22	2.9	22	72	15	67	61	3	30	4	1.33
3062876--3062972	23	4.2	23	75	10	90	29	3	15	51	1.59
3062889--3062917	15	1.9	15	100	0	58	34	0	10	55	1.34
3062932--3063003	23	3.0	23	71	15	65	29	5	13	51	1.64
3063001--3063653	289	2.3	284	83	7	786	33	14	5	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16