genome.fa.s7916.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496649--496842	31	6.2	31	78	10	200	31	19	18	30	1.96
496649--496814	63	2.7	63	96	0	298	32	18	18	31	1.94
499468--499498	10	3.2	10	95	4	55	64	0	0	35	0.94
499774--499853	29	2.7	28	79	14	74	61	1	0	37	1.04
501254--501351	3	33.0	3	82	11	114	66	0	3	30	1.07
501407--501448	21	2.0	21	100	0	84	14	23	14	47	1.80
523898--523947	25	2.0	24	84	3	64	30	26	22	22	1.99
525171--525201	15	2.1	15	93	0	53	54	0	0	45	0.99
526881--526950	29	2.4	28	95	2	122	18	21	14	45	1.84
526937--527005	24	2.8	26	83	12	85	31	24	5	37	1.79
526970--527005	12	3.0	12	91	0	63	36	25	5	33	1.79
527313--527489	64	2.8	65	78	9	182	25	19	21	33	1.97
527376--527537	64	2.5	63	82	11	172	25	20	19	33	1.96
529877--530011	48	2.8	48	90	0	207	28	23	16	31	1.96
529813--530126	163	1.9	163	88	1	477	29	23	16	30	1.96
529928--530354	114	3.7	113	86	3	606	29	23	15	30	1.96
530618--530659	18	2.4	18	88	11	61	33	0	0	66	0.92
530860--530962	26	4.0	26	82	2	102	26	42	15	15	1.87
532680--532714	2	17.5	2	93	0	61	45	2	0	51	1.16
533752--533805	26	2.1	26	83	10	67	55	0	1	42	1.10
552588--552622	2	17.5	2	100	0	70	51	0	0	48	1.00
555807--555845	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559013--559042	2	15.0	2	100	0	60	50	0	0	50	1.00
564149--564191	2	21.5	2	100	0	86	51	0	0	48	1.00
564952--565105	75	2.0	76	98	1	301	31	10	14	43	1.79
567283--567311	2	14.5	2	100	0	58	51	0	0	48	1.00
570290--570321	2	16.0	2	100	0	64	50	0	0	50	1.00
575084--575112	2	14.5	2	100	0	58	51	0	0	48	1.00
577183--577268	13	6.6	12	72	15	55	30	3	0	66	1.08
577189--577235	17	2.8	16	79	17	51	23	6	0	70	1.10
577198--577253	22	2.8	20	77	17	62	25	5	0	69	1.09
577225--577268	14	3.1	14	80	12	54	34	0	0	65	0.93
577198--577256	21	2.8	22	78	16	63	25	5	0	69	1.09
577183--577272	34	2.7	34	73	17	82	31	3	0	65	1.09
577313--577462	79	2.0	76	82	13	186	22	5	2	69	1.22
577490--577532	16	2.6	16	82	13	52	16	13	0	69	1.19
580709--580742	12	2.9	12	95	4	61	79	0	14	5	0.91
580716--580754	18	2.2	17	86	4	51	84	0	10	5	0.76
580708--580750	13	3.4	13	87	6	61	81	0	13	4	0.84
581892--581998	31	3.4	32	88	3	146	29	14	20	35	1.92
581892--581998	32	3.4	31	87	3	142	29	14	20	35	1.92
582872--582990	36	3.3	36	84	4	150	27	18	14	39	1.89
582948--583121	65	2.6	65	86	5	233	33	20	9	36	1.85
582948--583131	67	2.7	67	87	5	239	33	20	8	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583787--584159	106	3.5	106	81	8	459	33	24	18	24	1.97
585554--585600	2	24.0	2	85	12	62	44	2	0	53	1.12
585702--585758	18	3.2	18	78	7	55	22	3	0	73	0.98
585739--585763	13	1.9	13	100	0	50	12	8	0	80	0.92
585863--585907	18	2.6	17	83	13	56	15	13	0	71	1.15
585861--585907	17	2.7	17	81	12	60	14	12	0	72	1.13
588056--588080	2	12.5	2	100	0	50	52	0	0	48	1.00
623043--623088	2	23.0	2	100	0	92	50	0	0	50	1.00
626208--626262	2	28.0	2	88	3	76	47	0	0	52	1.00
629339--629372	2	17.5	2	87	6	52	50	2	0	47	1.16
631934--631963	2	15.0	2	100	0	60	50	0	0	50	1.00
634413--634439	2	13.5	2	100	0	54	51	0	0	48	1.00
636461--636485	2	12.5	2	100	0	50	48	0	0	52	1.00
636545--636582	20	1.9	20	88	0	58	26	7	2	63	1.35
636592--636626	16	2.1	18	89	10	56	25	8	0	65	1.21
639836--639895	9	7.4	8	77	19	54	83	6	10	0	0.81
639836--639888	12	4.4	12	90	4	81	83	7	9	0	0.83
639836--639895	24	2.5	23	86	10	68	83	6	10	0	0.81
640494--640536	22	2.0	22	90	9	70	37	23	9	30	1.86
641502--641625	36	3.4	36	82	6	160	25	20	13	40	1.89
642401--643124	105	7.0	105	92	1	1122	33	26	17	23	1.96
642401--643124	207	3.5	208	90	2	1098	33	26	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644332--644394	2	31.5	2	100	0	126	49	0	0	50	1.00
644457--644494	20	1.9	20	88	0	58	26	7	2	63	1.35
644505--644539	16	2.1	18	89	10	56	25	8	0	65	1.21
673283--673328	21	2.2	21	100	0	92	23	4	30	41	1.74
678991--679015	13	1.9	13	100	0	50	48	0	4	48	1.20
680698--680732	2	17.5	2	100	0	70	51	0	0	48	1.00
682547--682577	2	15.5	2	100	0	62	51	0	0	48	1.00
683039--683176	59	2.3	59	91	4	233	40	16	2	39	1.64
683039--683168	28	4.4	31	70	19	107	40	16	2	40	1.61
688450--688474	4	6.2	4	100	0	50	24	0	24	52	1.48
689989--690126	11	12.6	11	72	18	51	47	10	0	41	1.44
689973--690082	14	8.8	13	72	19	85	45	9	0	44	1.41
690071--690126	19	3.1	19	73	23	66	50	16	0	33	1.45
690357--690412	21	2.7	20	81	13	60	51	7	0	41	1.29
690388--690537	26	6.1	25	79	12	141	44	8	2	45	1.44
690391--690547	11	12.8	13	76	19	128	44	8	1	44	1.46
690755--690930	38	4.5	38	67	19	110	44	10	0	44	1.37
690753--690917	59	2.8	59	91	2	269	45	10	0	43	1.39
690777--690917	18	7.1	20	67	16	87	46	11	0	42	1.40
690936--690983	25	2.0	24	91	4	78	50	12	0	37	1.41
693954--694012	26	2.3	25	77	8	64	44	0	6	49	1.29
694782--694844	28	2.2	30	91	5	103	57	11	0	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694786--694851	28	2.4	28	85	10	98	56	10	0	33	1.34
694821--694869	21	2.3	21	85	3	71	53	16	0	30	1.43
695310--695387	29	2.7	29	82	4	95	17	29	34	17	1.94
696396--696427	2	16.0	2	100	0	64	50	0	0	50	1.00
696626--696665	19	2.1	19	100	0	80	30	5	30	35	1.79
711885--711966	23	3.6	23	96	0	146	19	26	28	25	1.99
716947--717006	23	2.6	23	91	0	93	20	25	28	26	1.99
717113--717148	2	18.0	2	100	0	72	50	0	0	50	1.00
717728--717757	15	2.0	15	93	0	51	53	3	13	30	1.56
717851--717898	24	2.0	24	87	0	69	29	6	35	29	1.82
717857--717915	24	2.5	24	85	0	82	33	5	32	28	1.79
717897--718065	84	2.0	84	91	0	275	31	9	30	27	1.88
718264--718320	27	2.1	27	90	0	87	43	7	17	31	1.76
721739--721771	17	1.9	17	93	0	57	51	0	9	39	1.34
738756--739024	134	2.0	134	100	0	538	25	20	26	27	1.99
751099--751149	25	2.0	25	84	0	66	37	3	23	35	1.74
752203--752243	19	2.1	20	86	13	59	31	2	0	65	1.05
754446--755282	341	2.5	339	89	3	1240	43	6	4	45	1.51
755194--755241	16	2.9	16	84	3	51	43	4	0	52	1.20
755228--755276	26	1.9	26	83	4	64	46	4	2	46	1.33
758610--758658	23	2.1	23	84	0	62	40	2	18	38	1.62
758633--758776	64	2.3	61	87	3	198	44	6	12	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758824--759894	199	5.5	199	84	6	1298	31	15	14	38	1.87
759056--759423	179	2.1	179	92	0	601	31	15	16	36	1.90
760205--760470	125	2.1	125	90	0	415	42	13	12	32	1.81
761117--761156	19	2.2	19	86	4	55	40	15	12	32	1.84
763025--763067	22	2.0	22	85	0	59	32	4	11	51	1.59
763574--763598	6	4.2	6	100	0	50	20	16	64	0	1.30
763725--763796	23	3.1	23	92	4	117	54	0	0	45	0.99
763725--763785	24	2.6	24	97	2	115	55	0	0	44	0.99
763783--763813	2	15.5	2	100	0	62	51	0	0	48	1.00
763811--763864	12	4.6	12	79	4	65	25	48	14	11	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16