genome.fa.s7916.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  8  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1674105--1674414	20	15.5	20	86	1	343	20	17	24	37	1.93
1674401--1674483	21	4.0	21	73	6	78	25	16	24	33	1.96
1674381--1674479	42	2.4	43	77	11	100	21	18	23	37	1.94
1676400--1676847	217	2.1	215	88	4	668	35	18	14	30	1.91
1680001--1680028	7	4.0	7	100	0	56	42	0	14	42	1.45
1701773--1701812	2	20.0	2	100	0	80	50	0	50	0	1.00
1703278--1703317	21	1.9	21	84	0	53	35	5	2	57	1.34
1705416--1705575	64	2.5	63	84	6	198	35	19	20	25	1.96
1706231--1706325	31	3.1	31	76	3	102	26	16	21	35	1.94
1706253--1706359	31	3.5	30	77	6	81	25	17	24	32	1.97
1709655--1709814	64	2.5	63	84	6	198	35	19	20	25	1.96
1710498--1710563	19	3.5	19	89	0	96	42	10	10	36	1.74
1710668--1710709	21	2.0	21	95	0	75	23	21	28	26	1.99
1710738--1710777	20	1.9	21	85	10	55	37	37	10	15	1.80
1710992--1711061	34	2.1	32	89	5	104	31	15	31	21	1.95
1711921--1711968	19	2.5	20	82	3	62	52	6	12	29	1.63
1713334--1713399	19	3.5	19	89	0	96	42	10	10	36	1.74
1713504--1713545	21	2.0	21	95	0	75	23	21	28	26	1.99
1713574--1713613	20	1.9	21	85	10	55	37	37	10	15	1.80
1713828--1713897	34	2.1	32	89	5	104	31	15	31	21	1.95
1714273--1714367	31	3.1	31	80	3	111	26	17	21	34	1.95
1715762--1715839	31	2.5	31	78	0	84	28	26	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1719073--1719113	2	20.5	2	100	0	82	48	0	0	51	1.00
1719682--1719732	19	2.6	20	90	3	77	43	23	17	15	1.88
1719682--1719939	20	12.6	20	74	9	117	39	19	22	18	1.92
1719807--1719937	40	3.2	40	84	5	165	36	16	24	22	1.94
1720027--1720063	6	6.5	6	96	3	60	29	54	16	0	1.43
1720746--1720849	6	17.5	6	98	1	201	0	16	50	32	1.45
1720927--1720966	20	2.0	20	90	0	62	12	17	17	52	1.74
1720957--1721116	20	7.4	20	77	14	131	20	25	17	36	1.94
1720972--1721116	69	2.2	66	91	7	233	22	24	17	35	1.95
1720957--1721220	20	12.6	20	72	13	120	18	22	19	39	1.92
1721170--1721220	19	2.6	20	90	3	77	15	17	23	43	1.88
1722819--1722849	14	2.1	15	94	5	55	70	0	3	25	1.02
1723319--1723394	33	2.3	31	80	12	89	31	14	17	36	1.90
1723455--1723504	13	3.8	13	78	21	59	68	2	0	30	1.01
1723454--1723495	22	1.9	22	90	9	68	69	2	0	28	1.01
1723996--1724152	32	4.7	34	75	12	139	24	17	26	32	1.96
1724003--1724160	66	2.4	67	88	6	232	24	17	25	31	1.97
1724429--1724677	109	2.3	106	88	3	347	22	18	24	34	1.96
1727592--1727622	15	2.0	16	93	6	55	77	0	3	19	0.90
1728664--1728713	7	6.9	7	82	17	66	72	0	0	28	0.86
1728667--1728712	4	12.2	4	82	17	55	73	0	0	26	0.83
1729184--1729267	33	2.5	33	90	3	125	29	14	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729317--1729370	3	18.3	3	78	17	60	70	0	0	29	0.88
1735955--1736023	25	2.8	25	88	2	104	39	5	20	34	1.76
1737131--1737178	2	25.5	2	85	12	66	50	2	0	47	1.12
1738088--1738117	15	1.9	16	93	6	53	40	0	3	56	1.16
1743236--1743306	21	3.5	21	80	3	65	18	15	26	39	1.90
1743252--1743303	21	2.6	21	87	6	72	19	19	26	34	1.95
1759702--1759742	12	3.4	12	82	0	55	41	21	17	19	1.90
1760342--1760422	18	4.3	18	79	13	83	30	32	17	19	1.95
1768408--1768477	26	2.7	26	88	0	95	11	22	14	51	1.74
1772599--1772638	17	2.3	18	87	12	57	67	2	5	25	1.23
1774296--1774331	13	2.8	13	95	0	63	69	0	0	30	0.89
1774398--1774427	10	3.0	10	90	0	51	33	0	36	30	1.58
1774925--1774976	16	3.4	16	68	10	54	38	7	0	53	1.30
1774926--1774987	30	2.1	30	100	0	124	35	12	0	51	1.40
1775231--1775285	28	2.0	28	92	0	92	38	32	20	9	1.84
1775647--1775804	21	7.8	20	70	7	77	37	24	17	19	1.93
1775772--1776162	20	19.5	20	83	6	450	35	25	18	20	1.95
1776469--1776558	14	5.7	14	74	23	81	42	22	25	10	1.84
1776461--1776575	33	3.5	33	92	0	203	45	20	24	10	1.82
1776468--1776580	19	6.8	17	72	23	82	43	21	24	10	1.84
1776592--1776646	14	3.6	14	73	21	56	9	25	23	41	1.83
1776576--1776646	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1776587--1776668	33	2.5	33	89	2	119	9	25	21	42	1.84
1776599--1776687	20	4.8	20	72	19	75	12	24	19	43	1.85
1776767--1776837	33	2.2	33	92	0	115	47	16	22	12	1.80
1777019--1777073	22	2.5	22	81	0	74	20	16	40	23	1.91
1777219--1777412	20	9.6	20	81	6	212	19	19	25	35	1.95
1777219--1777412	61	3.2	60	81	5	237	19	19	25	35	1.95
1777218--1777412	81	2.4	81	83	3	241	18	19	25	35	1.95
1782479--1782545	33	2.0	33	94	0	116	49	1	7	41	1.40
1787605--1787744	75	1.9	75	84	3	174	40	11	12	35	1.80
1787716--1787921	104	2.0	104	96	0	376	38	12	12	36	1.81
1790172--1790212	21	1.9	22	90	5	66	24	34	26	14	1.94
1796055--1796138	22	3.8	22	83	9	98	22	30	26	20	1.98
1797681--1797719	18	2.2	18	85	0	51	35	30	25	7	1.84
1803292--1803415	63	2.0	62	85	4	169	31	20	18	29	1.96
1803292--1803416	31	4.0	32	77	11	123	32	20	18	29	1.96
1803769--1803823	25	2.2	24	78	9	58	41	14	0	43	1.45
1805293--1805318	2	13.0	2	100	0	52	50	0	0	50	1.00
1805469--1805603	72	1.9	72	88	0	207	33	21	8	36	1.85
1805969--1806028	30	2.0	31	83	9	79	25	16	8	50	1.73
1811204--1811247	23	1.9	23	90	0	70	38	18	18	25	1.92
1812146--1812191	21	2.1	22	88	11	69	41	2	0	56	1.11
1813288--1813627	175	2.0	170	96	2	626	25	24	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1817289--1817329	15	2.8	15	92	3	66	56	24	12	7	1.61
1821170--1821230	23	2.6	24	89	2	88	50	22	13	13	1.75
1827203--1827251	21	2.3	21	96	0	89	42	12	18	26	1.85
1835556--1835598	23	2.0	22	86	13	63	37	0	0	62	0.95
1838848--1838874	3	9.0	3	100	0	54	66	0	0	33	0.92
1839655--1839680	2	13.0	2	100	0	52	50	0	0	50	1.00
1841356--1841393	2	19.0	2	100	0	76	50	0	0	50	1.00
1843314--1843360	22	2.2	22	88	3	69	53	12	8	25	1.67
1845378--1845420	21	2.0	21	81	0	50	27	27	25	18	1.98
1845964--1846037	2	37.0	2	100	0	148	50	0	0	50	1.00
1846194--1846218	4	6.2	4	100	0	50	28	0	24	48	1.52
1846470--1846782	30	10.4	30	98	0	599	24	19	23	32	1.97
1849514--1849555	2	21.0	2	100	0	84	50	0	0	50	1.00
1850073--1850115	21	2.0	21	81	0	50	27	27	25	18	1.98
1850657--1850688	2	16.0	2	100	0	64	50	0	0	50	1.00
1851038--1851130	31	3.0	31	80	0	105	26	16	21	35	1.94
1851116--1851398	30	9.4	30	96	0	512	24	19	23	32	1.97
1854351--1854392	18	2.3	19	80	12	52	7	7	23	61	1.47
1860284--1860344	29	2.1	30	81	3	70	16	16	16	50	1.78
1862346--1862389	21	2.0	22	86	4	63	25	27	25	22	2.00
1862382--1862413	11	2.9	11	100	0	64	28	25	18	28	1.98
1863661--1863707	13	3.5	13	88	5	76	59	0	40	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863655--1863706	27	1.9	27	96	0	95	57	0	42	0	0.98
1863654--1863712	27	2.2	26	88	8	91	55	0	44	0	0.99
1866491--1866527	2	18.5	2	100	0	74	51	0	0	48	1.00
1866527--1866559	2	16.5	2	100	0	66	51	0	48	0	1.00
1868700--1868732	2	16.0	2	93	6	57	48	3	0	48	1.17
1871429--1871776	174	2.0	174	89	2	538	20	14	18	45	1.85
1882231--1882293	32	2.0	31	96	3	117	50	23	6	19	1.70
1886325--1886458	67	2.0	67	100	0	268	55	4	10	29	1.53
1888740--1888780	2	20.5	2	94	0	73	53	0	0	46	1.00
1892477--1892518	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16