genome.fa.s7916.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  9  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1896447--1896481	14	2.4	15	95	4	63	22	17	22	37	1.94
1900321--1900364	23	1.9	23	100	0	88	4	4	40	50	1.43
1901549--1901580	2	16.0	2	100	0	64	50	0	0	50	1.00
1904885--1904972	45	1.9	47	90	4	144	35	14	7	42	1.75
1904975--1905037	21	3.0	21	73	11	67	41	7	15	34	1.77
1916439--1916612	90	1.9	90	94	0	303	29	12	14	43	1.82
1916519--1916754	111	2.1	111	87	2	348	32	10	11	45	1.75
1917405--1917841	111	3.9	111	90	2	664	32	12	10	43	1.77
1918338--1918738	111	3.6	111	90	3	628	31	10	10	46	1.74
1918946--1919288	87	3.9	87	94	0	497	34	11	11	42	1.78
1919129--1919179	23	2.2	23	89	0	75	33	19	9	37	1.85
1919219--1919275	23	2.5	23	88	0	78	33	12	10	43	1.76
1921879--1921919	14	2.9	14	96	0	73	58	19	12	9	1.61
1928352--1928381	15	2.0	15	100	0	60	53	0	0	46	1.00
1929105--1929131	2	13.5	2	100	0	54	51	0	0	48	1.00
1929795--1929837	3	14.3	3	85	9	61	65	2	2	30	1.18
1935696--1935792	30	3.2	30	98	0	185	31	24	19	23	1.98
1935781--1935878	31	3.2	30	78	13	117	32	18	19	29	1.96
1937373--1937417	21	2.1	21	87	0	63	15	24	28	31	1.96
1949806--1949867	30	2.1	30	93	0	106	24	17	19	38	1.93
1951435--1951464	13	2.3	13	100	0	60	26	6	6	60	1.47
1955223--1955259	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955395--1955480	37	2.6	31	73	21	84	47	4	0	47	1.22
1959387--1959440	12	4.6	12	86	4	65	11	14	48	25	1.77
1959438--1959472	2	17.5	2	100	0	70	48	0	0	51	1.00
1959467--1959498	15	2.1	15	100	0	64	53	0	0	46	1.00
1959500--1959531	13	2.5	13	100	0	64	15	15	53	15	1.74
1971321--1971524	104	2.0	104	87	1	293	34	17	21	26	1.95
1974551--1974604	20	2.9	19	82	12	60	62	1	3	31	1.23
1974529--1974605	33	2.3	32	78	10	77	62	2	5	29	1.30
1974642--1974686	22	2.0	22	82	0	54	60	13	8	17	1.58
1978687--1978768	30	2.8	30	84	1	103	35	29	18	17	1.93
1979454--1979513	24	2.5	24	97	0	111	15	23	28	33	1.94
1980587--1980617	16	1.9	16	93	0	53	12	19	0	67	1.22
1981793--1981831	15	2.6	15	100	0	78	35	38	0	25	1.56
1982706--1982732	12	2.2	12	100	0	54	51	14	0	33	1.43
1988763--1988903	59	2.4	59	81	8	169	34	19	4	40	1.74
1990690--1990762	20	3.7	20	90	0	119	9	20	23	46	1.80
1990751--1990796	21	2.2	21	100	0	92	26	17	28	28	1.98
1991821--1991923	30	3.4	30	91	2	145	31	26	21	21	1.98
1991878--1991971	30	3.1	31	83	4	93	35	22	20	22	1.96
1996488--1996587	30	3.3	30	88	2	130	33	26	20	21	1.97
1996512--1996612	31	3.3	31	87	1	123	33	24	19	21	1.97
1996569--1996637	31	2.2	31	84	5	86	36	21	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1997291--1997326	2	18.0	2	100	0	72	50	0	0	50	1.00
1997881--1997925	21	2.1	21	87	0	63	15	24	28	31	1.96
1999100--1999152	22	2.4	22	90	0	88	39	28	15	16	1.89
1999144--1999209	20	3.2	20	70	4	69	37	24	19	18	1.93
1999141--1999241	41	2.5	41	91	3	159	35	23	18	21	1.96
2003033--2003089	17	3.6	16	76	19	57	80	1	14	3	0.92
2003033--2003085	18	3.2	17	76	10	56	81	1	13	3	0.92
2005953--2005998	23	2.0	23	83	8	58	34	8	8	47	1.65
2008241--2008309	35	2.0	35	97	0	129	52	11	11	24	1.71
2011418--2011457	13	3.1	13	96	0	71	47	5	7	40	1.54
2013095--2013127	2	16.5	2	100	0	66	48	0	0	51	1.00
2017950--2018007	19	3.3	19	70	22	63	37	8	15	37	1.78
2017962--2017998	14	2.6	14	86	0	56	35	8	16	40	1.78
2018035--2018087	22	2.4	22	87	6	72	22	28	22	26	1.99
2018645--2018733	46	1.9	46	90	0	142	29	21	26	22	1.99
2018640--2018737	23	4.3	23	84	0	124	28	23	25	22	1.99
2019060--2019107	25	1.9	24	84	16	62	43	6	12	37	1.68
2021367--2021417	20	2.5	20	93	0	93	27	13	31	27	1.94
2022234--2022268	18	1.9	18	100	0	70	17	22	34	25	1.96
2027283--2027375	2	46.5	2	100	0	186	50	0	0	49	1.00
2030415--2030544	60	2.2	60	84	4	172	39	15	12	33	1.84
2034807--2034846	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2041003--2041052	26	2.0	25	88	4	73	24	4	4	68	1.24
2041445--2041483	3	13.0	3	100	0	78	66	0	0	33	0.92
2042237--2042279	22	2.0	22	90	0	68	41	2	4	51	1.35
2051676--2051712	2	19.0	2	94	5	67	51	0	0	48	1.00
2051855--2051908	27	2.0	27	100	0	108	48	7	7	37	1.59
2059230--2059318	29	3.1	28	71	16	76	29	1	5	64	1.24
2061587--2061633	21	2.2	21	100	0	94	25	6	17	51	1.69
2063019--2063063	21	2.1	21	87	0	63	31	28	24	15	1.96
2064882--2064926	23	2.0	23	81	0	54	22	26	24	26	2.00
2068056--2068100	21	2.1	21	87	0	63	31	28	24	15	1.96
2070183--2070249	22	3.0	22	95	0	125	26	25	26	20	1.99
2070872--2071026	70	2.2	70	84	4	199	18	28	25	27	1.98
2071006--2071048	21	2.0	21	86	0	59	16	25	27	30	1.97
2072087--2072131	23	2.0	23	86	0	63	20	26	26	26	1.99
2075206--2075250	21	2.1	21	100	0	90	35	24	13	26	1.92
2077053--2077137	40	2.1	40	93	4	145	48	4	4	42	1.45
2077287--2077319	17	1.9	17	88	11	50	66	0	0	33	0.92
2078725--2078755	2	15.5	2	100	0	62	51	0	0	48	1.00
2079021--2079050	14	2.1	14	100	0	60	26	0	30	43	1.55
2085971--2086021	22	2.4	22	96	3	95	19	43	0	37	1.51
2088353--2088390	20	1.9	20	88	0	58	13	26	34	26	1.93
2095280--2095377	45	2.2	45	82	8	121	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2097581--2097618	17	2.2	17	95	0	67	39	2	42	15	1.61
2103305--2103803	41	12.3	41	77	6	361	28	19	18	33	1.95
2103305--2103803	82	6.1	82	76	6	467	28	19	18	33	1.95
2103353--2103567	115	1.9	115	86	1	306	29	20	17	32	1.95
2103471--2103762	125	2.4	124	80	4	363	29	19	16	34	1.94
2103469--2103799	166	2.0	166	91	0	536	28	19	17	34	1.94
2106895--2107130	43	5.5	43	82	4	271	23	21	22	33	1.98
2106895--2107157	43	6.1	44	81	6	148	24	20	22	32	1.98
2107753--2107867	60	1.9	60	82	3	142	40	14	13	32	1.85
2110914--2110951	17	2.3	17	86	4	51	15	15	5	63	1.48
2119312--2119342	2	15.5	2	100	0	62	51	0	0	48	1.00
2119661--2119719	19	3.1	19	100	0	118	35	10	6	47	1.64
2122693--2122719	13	2.1	13	100	0	54	7	29	11	51	1.64
2126802--2126877	29	2.6	28	80	10	82	25	9	10	55	1.63
2142459--2142644	90	2.1	90	90	4	295	41	9	5	43	1.61
2145369--2145408	20	2.1	19	85	4	53	45	12	5	37	1.64
2151944--2151976	16	2.0	17	88	5	50	36	24	6	33	1.80
2152980--2153044	30	2.2	30	97	0	121	32	16	44	6	1.73
2157409--2157505	42	2.3	42	94	0	167	58	5	3	32	1.35
2158216--2158249	13	2.5	13	85	4	50	35	0	0	64	0.94
2160575--2160617	18	2.4	18	88	7	61	65	6	6	20	1.41
2162756--2162831	39	1.9	39	86	7	109	48	5	14	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2163978--2164024	2	23.5	2	95	0	85	53	0	0	46	1.00
2164195--2164258	30	2.1	30	100	0	128	39	10	18	31	1.86
2164420--2164446	7	3.9	7	100	0	54	29	55	0	14	1.40
2168912--2168948	3	12.3	3	88	0	56	59	0	5	35	1.20
2172819--2172919	41	2.4	41	81	1	121	32	13	21	31	1.93
2173380--2173427	22	2.2	22	88	7	71	41	12	18	27	1.86
2182810--2182874	33	2.0	33	90	0	103	46	18	33	1	1.59
2183388--2183539	42	3.6	42	70	4	110	33	25	19	22	1.97
2183488--2183662	43	4.1	43	84	1	208	33	25	17	24	1.97
2184573--2184639	20	3.3	20	79	4	89	41	17	23	16	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16