genome.fa.s7916.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764690--764757	33	2.1	33	85	0	91	41	5	7	45	1.56
766382--766419	19	2.0	19	85	10	51	31	5	26	36	1.79
769079--769419	167	2.0	171	97	2	645	34	21	6	36	1.80
770285--770349	31	2.1	31	94	0	112	41	20	16	21	1.90
771480--771505	2	13.0	2	100	0	52	50	0	0	50	1.00
772537--772588	19	2.7	19	100	0	104	30	17	30	21	1.96
772537--772633	19	4.7	23	80	15	74	30	18	27	22	1.97
772927--772969	16	2.5	18	81	7	54	32	6	18	41	1.77
778184--778228	21	2.1	22	84	12	58	28	4	17	48	1.66
782571--782610	21	1.9	21	100	0	80	47	27	0	25	1.52
783459--783565	55	1.9	55	88	3	162	31	24	18	25	1.98
787701--787783	36	2.3	36	93	0	148	36	19	18	26	1.94
792798--792840	2	21.5	2	100	0	86	51	0	0	48	1.00
793064--793120	21	2.6	21	83	8	62	33	8	12	45	1.72
792902--793165	140	1.9	140	84	3	352	34	7	14	42	1.75
798178--798313	65	2.1	66	95	4	249	44	9	8	37	1.68
802663--802702	3	13.3	3	100	0	80	32	0	0	67	0.91
818186--818237	24	2.2	24	96	0	95	28	26	17	26	1.97
821092--821136	21	2.1	21	83	0	54	35	8	2	53	1.45
821236--821275	21	1.9	21	84	0	53	47	2	7	42	1.45
822213--822274	25	2.4	26	74	15	67	41	0	4	53	1.22
823418--823517	45	2.2	45	96	0	182	44	21	7	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828984--829193	105	2.0	104	81	4	244	40	22	14	23	1.90
833294--833339	20	2.3	20	85	7	58	54	2	6	36	1.39
833975--834013	19	2.1	19	95	0	69	20	38	15	25	1.92
833912--834121	65	3.2	64	81	10	205	29	26	17	26	1.97
836632--836992	175	2.0	178	96	3	665	35	17	21	26	1.95
838537--838575	19	2.1	19	95	0	69	20	38	15	25	1.92
838524--838685	65	2.5	65	83	3	211	29	27	16	26	1.96
843726--843856	65	2.0	66	96	1	246	32	17	23	26	1.97
845886--845924	19	2.1	19	95	0	69	20	38	15	25	1.92
845872--846032	65	2.5	65	84	3	200	31	27	15	26	1.96
856801--857023	105	2.1	105	81	0	250	38	21	16	23	1.93
858520--858560	21	2.0	21	100	0	82	21	24	24	29	1.99
861345--861802	231	2.0	231	97	0	871	32	22	15	28	1.95
863348--863436	27	3.3	27	89	6	144	42	16	12	28	1.84
865566--865656	34	2.7	34	89	0	128	32	12	14	40	1.83
867843--867921	24	3.3	24	87	0	113	37	25	10	26	1.87
868481--868511	2	15.5	2	100	0	62	51	0	0	48	1.00
868718--868754	19	1.9	19	94	0	65	35	8	5	51	1.55
870796--870953	60	2.6	58	81	5	147	39	6	20	33	1.78
894069--894158	21	4.3	22	77	13	84	37	22	20	20	1.94
894069--894128	21	2.7	23	84	10	97	38	21	20	20	1.94
894061--894158	42	2.4	41	85	10	128	35	21	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894069--894158	44	2.2	40	88	8	126	37	22	20	20	1.94
898728--898756	2	14.5	2	100	0	58	51	48	0	0	1.00
898756--898797	2	21.5	2	95	4	77	52	0	0	47	1.00
898958--899068	24	4.7	24	81	2	89	38	18	15	27	1.91
898972--899049	24	3.3	23	83	5	102	35	20	17	25	1.95
898975--899065	47	1.9	48	86	2	130	37	18	17	26	1.93
900303--900347	23	2.0	23	86	0	63	26	28	24	20	1.99
901517--901562	23	2.0	23	87	4	67	32	21	0	45	1.52
902232--902276	21	2.1	21	87	0	63	15	24	28	31	1.96
905456--905500	23	2.0	23	86	0	63	26	28	24	20	1.99
905479--905780	149	2.0	149	97	0	568	34	20	17	28	1.95
906420--906452	2	17.0	2	93	6	59	51	0	0	48	1.00
907389--907433	21	2.1	21	87	0	63	15	24	28	31	1.96
910259--910302	20	2.2	20	91	0	70	36	22	18	22	1.95
910858--910916	20	3.0	20	95	2	102	10	18	22	49	1.77
910861--910931	20	3.5	20	86	0	79	15	16	18	49	1.80
911826--911877	21	2.5	21	96	0	95	34	11	23	30	1.90
912674--912715	21	2.0	21	81	9	50	23	7	30	38	1.82
912880--912917	4	9.5	4	88	0	58	28	0	0	71	0.87
912880--912917	12	3.2	12	96	0	67	28	0	0	71	0.87
913067--913179	21	5.4	21	84	10	151	21	37	19	22	1.95
913061--913179	42	2.8	41	89	5	184	21	36	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914760--914795	18	2.0	18	94	0	63	16	2	25	55	1.55
918065--918233	20	8.4	20	72	8	92	31	11	25	30	1.92
918048--918153	40	2.7	40	81	5	110	35	12	24	27	1.91
918144--918253	41	2.7	39	75	6	103	30	10	29	30	1.91
924842--924967	50	2.5	50	82	0	171	18	36	26	19	1.94
925090--925129	10	4.0	10	84	12	55	32	27	0	40	1.57
925254--925475	111	2.0	111	93	0	381	36	7	10	45	1.67
927063--927099	12	3.2	12	77	14	51	32	5	51	10	1.60
926871--927413	273	2.0	271	96	3	1006	45	10	14	29	1.79
927336--927372	12	3.2	12	77	14	51	32	5	51	10	1.60
929853--929886	2	17.0	2	100	0	68	50	0	0	50	1.00
930353--930433	32	2.5	31	80	4	90	41	3	8	45	1.52
930692--930751	27	2.3	27	91	2	68	35	20	10	35	1.86
930699--930752	27	2.0	27	100	0	108	33	18	11	37	1.86
933563--933682	60	2.0	60	91	3	197	20	4	28	46	1.69
937180--937204	12	2.1	12	100	0	50	8	40	16	36	1.77
943748--943790	19	2.3	19	84	8	52	55	4	2	37	1.33
943751--943855	32	3.3	32	76	10	101	46	5	3	43	1.45
943802--943862	32	2.0	31	81	15	74	44	8	3	44	1.50
960084--960117	14	2.4	14	90	0	50	29	2	14	52	1.56
960368--960445	23	3.3	24	84	8	99	47	0	0	52	1.00
960368--960443	22	3.4	24	79	13	83	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960394--960463	32	2.2	34	82	10	85	47	0	0	52	1.00
960436--960486	23	2.2	23	86	6	68	52	0	1	45	1.12
960431--960514	31	2.8	32	72	13	79	48	0	1	50	1.08
960546--960611	27	2.4	26	85	10	78	53	1	0	45	1.09
960495--960587	27	3.4	27	73	14	93	51	1	0	47	1.07
960309--960632	54	6.1	54	69	19	148	49	1	0	49	1.13
960626--960670	23	2.0	23	86	0	63	53	2	2	42	1.25
961005--961042	20	1.9	20	84	10	51	36	13	0	50	1.42
969005--969049	21	2.2	20	88	4	63	24	15	8	51	1.72
974230--974262	16	2.1	16	100	0	66	57	24	12	6	1.57
974329--974403	10	7.7	10	69	21	61	57	21	12	9	1.62
974333--974397	16	4.1	16	95	0	121	56	23	12	7	1.61
975151--975206	14	4.3	14	80	17	66	50	25	14	10	1.75
975144--975191	10	4.4	10	78	19	51	52	22	12	12	1.73
975144--975205	24	2.6	24	92	0	97	51	24	12	11	1.72
975766--975887	58	2.1	58	81	4	136	35	16	12	36	1.86
981872--982079	115	1.8	115	95	3	382	26	20	9	42	1.83
1004980--1005026	22	2.2	22	84	3	60	36	4	10	48	1.57
1007200--1007310	59	1.9	58	83	9	145	39	7	23	29	1.81
1007458--1007569	59	1.9	59	85	7	156	39	7	23	30	1.81
1007077--1007591	259	2.0	255	98	1	994	38	12	15	33	1.85
1012284--1012320	19	1.9	19	94	0	65	32	29	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012383--1012436	21	2.6	21	96	0	99	46	22	14	16	1.84
1012876--1012912	19	1.9	19	100	0	74	27	29	5	37	1.79
1013392--1013566	60	2.9	60	77	8	160	32	21	4	41	1.73
1013688--1013864	60	2.9	59	78	9	171	42	3	21	32	1.69
1018184--1018210	2	13.5	2	100	0	54	51	0	0	48	1.00
1023509--1023564	25	2.2	26	80	9	69	44	8	7	39	1.63
1032342--1032376	6	5.8	6	90	10	54	85	0	0	14	0.59
1032342--1032376	11	2.9	12	91	8	54	85	0	0	14	0.59
1032342--1032380	19	2.1	19	90	9	62	84	0	0	15	0.62
1032343--1032380	12	3.1	13	81	11	53	84	0	0	15	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16