genome.fa.s7916.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212394--212433	20	2.0	20	95	0	71	57	20	12	10	1.63
212489--212535	20	2.3	20	92	0	76	23	19	21	36	1.95
214936--215159	57	3.9	57	94	0	376	27	14	22	35	1.93
215999--216183	56	3.2	55	85	8	244	40	14	17	28	1.88
216007--216186	60	3.1	59	85	7	242	40	13	17	28	1.88
222855--222880	9	2.9	9	100	0	52	0	19	0	80	0.71
227212--227307	40	2.4	40	91	0	156	36	20	19	22	1.95
227212--227330	20	5.9	20	72	8	89	32	21	21	25	1.97
228142--228188	24	2.0	24	91	0	76	23	19	21	36	1.95
229697--229853	54	2.9	54	92	0	251	36	22	20	20	1.95
229677--230005	74	4.5	74	79	6	328	37	21	19	21	1.95
229865--229978	34	3.2	34	71	20	106	38	21	19	21	1.93
229845--229949	53	2.0	54	86	1	149	37	21	19	21	1.95
229669--229966	20	15.9	20	75	12	247	36	21	19	22	1.95
230047--230125	30	2.4	33	79	18	101	54	13	5	26	1.60
230064--230127	30	2.1	30	97	0	119	53	12	4	29	1.59
231541--231617	21	3.7	22	77	11	65	23	16	37	22	1.94
231529--231621	42	2.2	42	80	3	107	23	17	38	20	1.93
232118--232173	20	2.8	20	94	0	94	41	23	17	17	1.90
232216--232283	20	3.4	20	85	4	93	19	22	25	33	1.97
232431--232480	18	2.8	18	100	0	100	42	6	20	32	1.76
234208--234264	20	2.8	20	89	0	78	52	22	14	10	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234655--234729	22	3.4	22	92	0	114	17	17	41	24	1.90
234894--234952	20	3.0	20	92	0	100	28	22	25	23	1.99
234921--234998	20	3.9	20	73	6	68	26	20	19	33	1.96
234894--235000	40	2.7	40	82	2	108	28	21	20	29	1.98
234950--235037	46	1.9	46	90	0	140	25	21	15	37	1.93
234960--235029	20	3.2	20	71	21	68	24	21	17	37	1.94
236161--236200	21	1.9	21	84	0	53	2	42	0	55	1.13
238663--238702	2	20.0	2	100	0	80	50	0	0	50	1.00
253917--253966	24	2.1	23	82	10	57	26	2	4	68	1.18
268975--269098	62	2.0	62	96	3	232	29	16	37	16	1.90
271621--271688	2	34.0	2	93	0	118	47	0	1	51	1.09
273228--273325	45	2.1	48	87	9	141	28	11	19	40	1.86
274678--274766	42	2.2	41	95	4	162	30	8	25	34	1.87
276059--276276	103	2.1	103	94	0	382	26	12	23	37	1.91
276293--276355	23	2.7	23	90	0	90	20	28	25	25	1.99
285841--285909	23	3.0	23	86	0	93	26	24	27	21	1.99
293279--293341	29	2.1	30	88	2	92	33	28	20	17	1.95
293333--293428	31	3.1	31	88	5	133	37	25	15	21	1.93
294047--294087	16	2.6	16	100	0	82	41	29	4	24	1.75
294333--294471	63	2.2	62	80	12	151	24	23	18	33	1.97
297327--297428	30	3.4	30	90	1	143	33	28	18	19	1.96
297327--297470	30	4.8	30	82	5	96	34	27	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297414--297509	31	3.1	31	84	0	120	35	22	17	23	1.95
298528--298648	64	1.9	63	81	8	147	27	19	16	36	1.93
300457--300583	8	15.5	8	67	21	50	77	0	11	10	1.02
300482--300568	8	10.8	8	74	18	74	75	1	12	10	1.09
300468--300560	17	5.7	16	78	7	73	77	1	10	10	1.05
300456--300583	24	5.2	25	73	20	101	78	0	10	10	1.02
300483--300560	17	4.8	16	82	14	97	75	1	12	10	1.10
300581--300664	45	1.9	43	85	4	114	38	16	29	15	1.90
301938--302321	55	7.0	55	79	2	324	27	16	23	32	1.96
304388--304415	2	14.0	2	100	0	56	50	0	0	50	1.00
314341--314409	35	2.0	35	91	0	111	21	13	17	47	1.81
317156--317188	16	2.0	17	88	5	50	33	30	6	30	1.82
334094--334186	38	2.5	37	75	13	100	49	1	0	49	1.07
334254--334323	35	2.0	35	88	2	106	20	32	11	35	1.88
339356--339394	19	1.9	19	85	10	51	51	2	15	30	1.57
340949--340989	21	1.9	22	85	5	57	41	19	14	24	1.89
354206--354289	23	3.7	23	90	0	123	23	26	30	19	1.98
354305--354522	103	2.1	103	95	1	393	36	22	13	26	1.92
359465--359548	23	3.7	23	80	6	107	28	25	27	19	1.98
359575--359789	103	2.1	103	94	1	378	37	23	12	26	1.91
362581--362614	16	2.2	16	89	5	52	44	0	2	52	1.16
362864--362930	11	6.3	11	70	18	52	41	1	1	55	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365797--366035	117	2.0	117	87	3	338	39	17	8	34	1.80
369842--369882	16	2.6	17	88	11	61	26	2	4	65	1.25
375176--375208	2	16.5	2	100	0	66	48	0	0	51	1.00
381167--381240	21	3.6	21	72	7	80	33	25	20	20	1.97
381148--381234	40	2.2	40	95	0	156	36	24	18	20	1.95
381146--381215	19	3.6	19	73	7	68	40	21	18	20	1.92
384211--384583	185	2.0	188	98	1	725	31	16	6	46	1.72
386244--386307	29	2.2	29	81	10	78	48	1	3	46	1.27
386250--386289	20	2.0	20	85	0	53	50	2	5	42	1.37
386260--386320	30	2.0	31	90	3	97	50	4	1	42	1.33
393743--393787	2	23.0	2	95	4	83	51	0	0	48	1.00
398512--398574	23	2.7	23	87	4	92	20	26	26	25	1.99
404664--404805	64	2.2	63	86	5	187	36	18	19	26	1.94
405403--405463	23	2.7	23	84	0	77	21	22	26	29	1.99
411214--411333	60	2.0	60	87	9	174	40	4	39	16	1.68
412153--412270	59	2.0	59	84	0	155	40	9	8	41	1.68
414187--414211	12	2.1	12	100	0	50	60	0	0	40	0.97
415394--415475	17	4.8	17	90	1	119	34	9	26	29	1.88
415868--415944	33	2.4	33	93	4	131	40	40	9	10	1.71
422052--422084	2	16.5	2	100	0	66	51	0	0	48	1.00
423120--423240	58	2.1	58	84	9	158	35	15	15	33	1.90
423120--423240	57	2.1	59	84	9	160	35	15	15	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423322--423352	16	1.9	16	100	0	62	70	3	0	25	1.02
423647--423762	57	2.0	57	83	0	142	37	6	6	48	1.57
425283--425314	2	16.0	2	93	0	55	46	0	0	53	1.00
432226--432262	12	3.0	13	88	7	51	18	8	0	72	1.08
433162--433190	3	9.7	3	100	0	58	31	0	0	68	0.89
434289--434363	33	2.3	33	97	0	141	37	13	20	29	1.90
443643--443676	2	17.0	2	100	0	68	50	0	0	50	1.00
448281--448341	23	2.7	23	84	0	86	16	24	24	34	1.95
448705--448749	2	23.0	2	90	4	74	46	0	0	53	1.00
448706--448749	19	2.4	19	96	3	63	45	0	0	54	0.99
452359--452504	72	2.0	72	100	0	292	38	21	19	20	1.94
453134--453186	24	2.2	24	93	0	88	37	13	15	33	1.86
453668--453713	20	2.4	19	85	3	56	41	6	4	47	1.49
453825--453913	3	30.3	3	95	4	164	66	0	0	33	0.92
454815--454870	27	2.1	28	86	6	80	37	7	3	51	1.47
456119--456225	53	2.0	53	100	0	214	26	18	38	16	1.92
468184--468225	18	2.3	18	91	0	66	0	0	16	83	0.65
468528--469159	322	2.0	313	90	6	976	41	15	21	21	1.90
475512--475563	2	26.5	2	92	3	88	50	0	0	50	1.00
475633--475663	10	3.2	10	95	4	55	64	0	0	35	0.94
475874--475945	31	2.4	28	80	13	74	61	1	0	37	1.05
476302--476351	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477338--477422	3	28.0	3	73	15	68	64	0	3	31	1.10
477338--477408	25	2.8	25	83	10	92	63	0	2	33	1.09
477521--478418	445	2.0	445	98	0	1744	26	16	15	40	1.89
478363--478533	85	2.0	85	97	0	324	28	21	11	39	1.88
478107--478776	341	2.0	344	94	1	1186	27	18	14	39	1.90
479071--479155	22	3.9	22	92	0	134	34	14	16	35	1.89
479135--479178	18	2.4	18	92	0	70	36	9	15	38	1.80
479965--480019	18	2.8	19	83	13	67	54	5	10	29	1.57
491698--491891	31	6.2	31	79	10	209	31	19	19	30	1.96
491698--491863	63	2.7	63	96	0	298	31	18	18	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16