genome.fa.s7916.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3725575

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1895 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3577717--3577810	21	4.5	21	90	5	129	19	35	26	19	1.95
3578333--3578429	33	2.9	34	85	3	124	56	4	2	37	1.30
3578331--3578436	34	3.2	32	82	8	122	55	4	1	37	1.32
3578829--3579456	128	4.9	128	97	0	1177	32	18	25	23	1.97
3579527--3579564	8	4.9	8	80	6	51	39	26	0	34	1.57
3584377--3584414	2	19.0	2	100	0	76	50	0	0	50	1.00
3586416--3586492	35	2.2	35	88	0	109	45	22	0	32	1.53
3586670--3586964	148	2.0	148	93	0	500	35	6	10	47	1.62
3588084--3588146	22	2.7	22	78	11	63	41	1	1	55	1.19
3593577--3593639	23	2.7	24	82	2	83	33	25	25	15	1.95
3594863--3594894	9	3.4	10	87	12	50	53	15	0	31	1.43
3601351--3601383	16	2.1	17	88	11	52	75	0	0	24	0.80
3601611--3601717	59	1.9	54	84	9	142	39	5	1	53	1.35
3605478--3605524	21	2.2	21	92	0	76	23	31	6	38	1.80
3607399--3607444	22	2.2	21	88	7	67	56	2	0	41	1.11
3608306--3608346	22	1.9	21	90	5	64	24	0	4	70	1.06
3609746--3609802	26	2.2	26	81	6	71	33	3	5	57	1.38
3614955--3614997	22	2.1	19	83	12	50	39	11	9	39	1.74
3618127--3618162	2	18.0	2	100	0	72	50	0	50	0	1.00
3623473--3623647	90	2.0	89	94	1	305	38	9	7	45	1.64
3624523--3624555	2	16.5	2	100	0	66	51	48	0	0	1.00
3626913--3626989	37	2.1	37	85	4	102	48	1	3	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3629126--3629232	35	3.1	35	94	2	180	33	11	16	38	1.85
3629749--3629776	3	9.3	3	100	0	56	32	0	0	67	0.91
3634876--3634929	24	2.2	24	96	0	99	31	0	20	48	1.50
3635723--3635763	20	2.0	20	90	0	64	31	12	17	39	1.86
3635725--3635770	20	2.3	20	84	0	56	30	15	19	34	1.93
3635825--3635862	20	2.0	20	89	5	60	34	21	10	34	1.87
3635816--3635875	19	3.1	19	80	4	66	36	20	8	35	1.82
3636017--3636165	74	2.0	75	92	1	246	46	1	0	51	1.09
3636068--3636117	20	2.5	20	90	3	75	58	0	0	42	0.98
3636107--3636140	16	2.1	17	88	5	52	26	2	0	70	1.01
3637750--3637816	35	1.9	35	84	6	91	52	1	0	46	1.09
3637767--3637816	17	2.9	17	72	24	50	52	0	0	48	1.00
3661365--3661512	51	3.0	49	75	13	151	9	20	46	22	1.79
3661390--3661444	21	2.6	21	85	0	74	5	21	49	23	1.70
3661414--3661581	27	6.4	27	67	20	104	9	17	48	25	1.77
3661440--3661486	18	2.6	18	82	0	67	12	19	46	21	1.82
3661336--3661493	45	3.4	45	74	14	142	10	18	47	22	1.80
3661365--3661496	48	2.7	50	78	10	148	9	19	47	22	1.79
3663060--3663321	37	7.4	37	70	12	158	39	13	20	26	1.90
3663030--3663236	102	2.0	102	100	0	414	38	11	21	28	1.88
3663060--3663269	37	6.0	36	72	13	177	40	11	21	26	1.88
3663174--3663319	36	4.1	36	75	10	129	41	14	19	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3663746--3663781	18	2.0	18	88	0	54	41	30	8	19	1.81
3664635--3664686	21	2.6	18	77	16	50	1	11	9	76	1.09
3664670--3664722	17	3.2	16	79	10	54	0	13	7	79	0.93
3665813--3665850	8	4.9	8	83	6	51	57	13	18	10	1.63
3668540--3668579	15	2.7	14	81	11	53	55	0	2	42	1.13
3668596--3668633	16	2.4	16	82	4	51	63	0	5	31	1.17
3668807--3668847	15	2.7	15	85	7	57	63	0	0	36	0.95
3669321--3669422	34	2.9	36	85	11	156	28	14	13	43	1.84
3670817--3670917	21	4.7	21	73	20	82	8	22	42	25	1.83
3670829--3671018	27	6.4	27	67	19	101	9	17	47	25	1.78
3670856--3670901	18	2.6	18	89	0	74	8	21	45	23	1.80
3670748--3670904	45	3.4	45	76	14	149	9	20	45	24	1.81
3670804--3670923	21	5.6	21	70	16	66	9	21	46	22	1.79
3675524--3675574	26	2.0	25	88	3	75	39	9	0	50	1.35
3675679--3675722	23	1.9	23	85	0	61	29	9	2	59	1.41
3675695--3675789	13	7.6	12	72	19	54	27	2	5	65	1.25
3675542--3675788	3	81.7	3	68	15	116	29	5	3	61	1.34
3676323--3677091	237	3.3	233	83	7	911	37	15	20	26	1.93
3676318--3677099	119	6.6	119	79	6	822	37	15	20	26	1.93
3676323--3677118	352	2.2	354	82	4	1014	37	15	20	26	1.92
3677264--3677432	3	57.0	3	73	17	140	28	1	2	66	1.16
3677266--3677432	13	13.0	13	73	20	122	28	1	2	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677440--3677475	2	18.0	2	100	0	72	50	0	0	50	1.00
3679160--3679208	23	2.2	21	79	10	53	28	16	6	48	1.69
3705232--3705283	20	2.6	20	96	0	95	38	26	13	21	1.90
3705339--3705532	20	9.6	20	76	8	76	35	25	19	19	1.95
3705335--3705532	40	5.0	39	81	4	200	35	26	19	19	1.95
3705339--3705531	60	3.2	60	83	0	251	35	25	19	19	1.95
3705913--3705983	33	2.2	33	92	0	115	11	22	18	47	1.80
3706104--3706158	14	3.6	14	73	21	56	41	23	25	9	1.83
3706104--3706174	33	2.2	33	94	0	124	43	25	22	8	1.81
3706170--3706267	19	5.7	19	70	22	81	10	24	22	42	1.84
3706192--3706281	14	5.7	14	74	23	81	8	25	23	42	1.83
3706175--3706289	33	3.5	33	95	0	212	9	24	20	45	1.81
3707980--3708442	92	5.0	93	96	2	873	22	12	19	46	1.83
3708474--3708602	19	7.3	19	75	17	125	45	28	17	8	1.77
3708510--3708602	33	2.8	32	91	4	150	46	27	18	7	1.76
3708474--3708602	52	2.5	52	74	14	140	45	28	17	8	1.77
3708598--3708732	19	7.6	19	73	16	119	11	19	24	45	1.82
3708620--3708676	14	3.7	14	77	20	60	10	21	22	45	1.82
3708603--3708695	33	2.8	33	93	0	159	10	20	22	46	1.81
3710642--3710676	13	2.6	14	90	4	54	31	0	22	45	1.53
3710781--3710881	19	5.6	19	82	15	142	43	17	23	14	1.87
3710888--3711176	33	8.5	34	81	13	230	14	20	18	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3710910--3711176	19	15.4	19	77	19	291	13	20	18	46	1.83
3710888--3711144	51	5.0	51	83	11	296	14	21	17	46	1.84
3710888--3711109	84	2.6	85	91	5	349	14	20	18	46	1.84
3713638--3713684	24	2.0	24	87	8	69	38	21	14	25	1.92
3714364--3714569	20	10.3	20	86	6	265	19	17	27	35	1.95
3714695--3714746	20	2.6	20	96	0	95	21	13	26	38	1.90
3723180--3723226	22	2.1	22	100	0	94	36	4	12	46	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!