genome.fa.s7938.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2641874--2642066	84	2.3	83	88	2	278	30	16	16	37	1.90
2642131--2642726	113	5.3	111	83	8	780	28	18	14	38	1.90
2642131--2642724	224	2.6	224	97	0	1109	28	18	14	38	1.90
2642026--2642775	337	2.3	324	79	11	870	28	18	14	38	1.89
2643318--2643396	22	3.6	22	85	0	113	39	13	13	32	1.85
2645837--2646063	114	2.0	115	92	0	384	29	20	15	33	1.94
2648315--2648344	15	1.9	16	93	6	53	3	13	0	83	0.77
2648638--2648688	2	25.5	2	100	0	102	50	0	0	49	1.00
2653284--2653338	16	3.7	15	83	13	69	72	0	1	25	0.94
2655460--2655529	3	22.7	3	88	5	104	64	0	0	35	0.94
2660117--2660214	29	3.3	29	69	16	83	31	21	5	41	1.75
2660088--2660268	60	3.0	60	83	1	211	31	20	6	41	1.76
2660091--2660186	31	3.2	31	67	16	74	32	19	5	42	1.74
2666800--2666886	31	2.8	31	73	5	86	44	9	4	41	1.57
2667302--2667341	11	3.7	11	83	16	57	60	0	0	40	0.97
2674049--2674411	131	2.8	131	79	2	327	42	16	9	31	1.81
2675647--2675785	73	1.9	72	92	4	235	36	20	12	30	1.89
2676800--2676877	35	2.2	35	79	2	84	38	1	20	39	1.61
2678369--2678406	20	1.9	20	100	0	76	15	21	31	31	1.94
2678485--2678606	3	39.3	3	69	21	74	58	1	4	36	1.27
2678501--2678609	48	2.3	48	98	1	211	57	1	3	36	1.27
2684629--2684671	19	2.3	19	88	8	61	62	11	4	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2685592--2685650	24	2.5	24	100	0	118	37	16	16	28	1.92
2687675--2687734	30	2.0	30	93	0	102	51	5	15	28	1.63
2689836--2689893	20	2.7	20	81	10	62	25	24	20	29	1.99
2693614--2693682	30	2.3	29	76	14	70	30	18	0	50	1.47
2696807--2696837	15	2.1	15	93	0	53	45	0	0	54	0.99
2696990--2697029	20	2.0	20	85	0	53	27	25	5	42	1.75
2704549--2704573	3	8.3	3	100	0	50	68	0	32	0	0.90
2706868--2707312	225	2.0	226	93	3	763	45	8	7	39	1.62
2707377--2707422	20	2.3	19	89	10	74	54	10	17	17	1.70
2707544--2707594	20	2.7	18	83	16	68	52	9	17	19	1.72
2709807--2709871	21	3.1	21	80	6	69	40	15	29	15	1.88
2709905--2709970	33	2.0	33	90	0	105	28	0	48	22	1.51
2711755--2711803	19	2.6	19	93	0	80	30	2	10	57	1.43
2711920--2713082	198	5.9	199	97	1	2114	37	15	16	30	1.90
2714533--2714600	21	3.4	18	69	21	55	36	8	35	19	1.83
2714533--2714630	6	16.3	6	80	0	70	36	7	34	21	1.81
2714548--2714634	3	29.0	3	77	0	84	35	5	34	24	1.79
2714536--2714626	42	2.2	42	91	0	146	35	7	35	21	1.83
2714533--2714630	18	5.4	18	78	0	88	36	7	34	21	1.81
2715823--2716329	181	2.8	183	95	2	887	36	14	16	33	1.89
2716323--2716368	22	2.0	23	87	4	67	30	10	10	47	1.73
2716035--2717560	647	2.4	654	96	2	2846	38	11	14	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2720200--2720236	18	2.1	18	89	0	56	32	5	10	51	1.60
2720192--2720238	24	2.0	24	86	0	67	34	4	14	46	1.64
2720491--2720577	39	2.2	39	95	0	156	48	20	13	17	1.81
2720912--2720958	21	2.2	22	77	11	53	38	12	10	38	1.78
2720976--2721039	23	2.8	23	82	0	83	35	6	18	39	1.76
2720976--2721048	23	3.2	23	78	7	76	34	5	19	41	1.74
2721403--2721466	23	2.8	23	87	0	92	35	6	20	37	1.78
2721403--2721475	23	3.2	23	82	7	85	34	5	20	39	1.76
2721825--2721888	23	2.8	23	87	0	92	35	6	18	39	1.76
2720685--2722165	422	3.5	428	96	2	2740	39	8	12	39	1.72
2723456--2723504	23	2.1	23	84	0	62	61	10	10	18	1.55
2725096--2725154	31	1.9	31	82	6	75	33	16	6	42	1.75
2725474--2725500	2	13.5	2	100	0	54	48	0	0	51	1.00
2727740--2727814	30	2.5	30	95	0	132	16	14	24	45	1.84
2730976--2731023	3	16.0	3	80	8	53	33	2	0	64	1.05
2731110--2731211	25	4.1	25	96	0	186	37	19	14	28	1.91
2739110--2739164	4	14.2	4	92	7	96	49	25	0	25	1.51
2739617--2739855	105	2.3	105	83	7	294	30	18	12	38	1.88
2739801--2739885	36	2.4	36	84	4	109	30	21	11	36	1.89
2740157--2740434	28	9.6	28	75	13	217	27	11	14	46	1.79
2740168--2740281	29	4.2	26	82	12	81	30	8	13	47	1.73
2740145--2740495	148	2.3	149	91	2	553	27	11	14	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2740313--2740434	54	2.2	56	81	8	151	28	9	15	45	1.78
2740821--2740989	63	2.7	62	76	16	161	28	13	16	42	1.85
2741126--2741379	43	5.8	43	72	10	178	27	30	19	22	1.98
2741126--2741298	89	1.9	89	98	0	337	27	28	19	24	1.98
2741586--2741633	3	16.0	3	80	8	53	33	2	0	64	1.05
2741596--2741646	24	2.2	23	82	10	59	35	5	0	58	1.22
2741671--2741711	22	2.0	22	85	9	59	29	43	21	4	1.73
2741722--2741823	25	4.1	25	96	0	186	37	19	14	28	1.91
2749101--2749151	24	2.2	24	89	3	77	23	0	11	64	1.26
2749412--2749516	55	1.9	56	92	2	176	45	4	3	45	1.42
2764566--2764626	31	2.0	31	83	0	77	42	21	14	21	1.88
2765846--2765904	21	2.8	21	75	10	66	27	0	20	52	1.47
2765846--2765902	14	4.1	14	76	0	51	28	0	19	52	1.46
2765986--2766052	21	3.2	21	80	0	80	29	1	17	50	1.55
2765978--2766083	14	7.6	14	74	11	76	28	0	23	47	1.58
2765994--2766059	21	3.2	20	75	12	53	28	0	21	50	1.49
2767279--2767368	42	2.1	42	84	13	123	30	27	21	21	1.98
2767290--2767370	21	4.0	21	90	7	132	29	28	22	19	1.98
2769006--2769045	18	2.2	19	86	13	57	20	32	17	30	1.95
2772463--2772522	21	3.0	21	88	7	90	30	30	21	18	1.97
2781539--2781570	13	2.5	13	100	0	64	15	53	15	15	1.74
2781682--2781727	12	3.9	12	88	2	67	30	47	10	10	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2781682--2781727	24	2.0	24	91	4	76	30	47	10	10	1.73
2781977--2782010	2	17.5	2	93	6	61	50	0	0	50	1.00
2782272--2782306	17	2.1	17	100	0	70	60	11	5	22	1.52
2788303--2788443	42	3.4	42	93	0	246	21	17	21	39	1.93
2788303--2788443	21	6.8	19	69	16	93	21	17	21	39	1.93
2789002--2789040	12	3.2	12	92	0	69	5	10	51	33	1.58
2789002--2789040	6	6.5	6	90	0	60	5	10	51	33	1.58
2789761--2789805	21	2.1	21	100	0	90	44	8	4	42	1.56
2792971--2793355	108	3.6	109	89	4	568	27	23	16	31	1.96
2792971--2793355	55	7.1	55	90	3	579	27	23	16	31	1.96
2794268--2794303	12	3.0	12	91	0	54	2	16	0	80	0.83
2794285--2794328	8	5.4	8	88	2	61	9	4	0	86	0.70
2794282--2794328	16	2.9	16	90	0	76	8	4	0	87	0.67
2807890--2807949	31	1.9	31	86	0	84	43	5	15	36	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!