genome.fa.s7938.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252819--252899	31	2.6	32	83	11	114	45	1	2	50	1.22
252907--252953	18	2.6	19	83	6	53	42	2	0	55	1.12
252945--252991	22	2.1	23	88	4	69	53	0	2	44	1.12
252813--253021	31	6.8	31	69	19	102	47	0	1	49	1.19
252953--252996	22	2.0	22	82	8	54	54	0	2	43	1.12
252901--253062	53	3.1	51	78	13	152	48	1	1	48	1.20
252885--253019	55	2.3	58	77	19	147	49	0	0	48	1.11
257207--257235	12	2.3	13	94	5	51	37	0	3	58	1.15
257935--257977	18	2.4	18	88	7	61	20	4	0	74	1.00
258020--258089	3	24.3	3	75	18	60	27	1	0	71	0.94
258054--258131	6	12.2	6	75	17	50	20	3	1	74	1.05
266034--266105	36	2.0	36	91	0	117	27	11	20	40	1.87
266981--267038	28	2.1	27	87	3	80	62	0	5	32	1.18
267556--267820	132	2.0	131	87	8	378	46	8	7	37	1.62
267883--267935	22	2.3	22	81	18	63	64	7	0	28	1.21
269140--269229	3	30.0	3	86	4	83	57	0	0	42	0.98
269140--269223	36	2.3	36	87	4	116	55	0	0	44	0.99
269140--269223	39	2.2	39	89	6	129	55	0	0	44	0.99
271298--271361	26	2.5	26	94	5	112	6	23	10	59	1.54
273707--273771	3	21.3	3	81	9	78	38	1	0	60	1.07
273694--273771	21	3.6	21	85	13	88	37	1	0	61	1.04
281082--281409	167	2.0	168	92	3	545	34	14	11	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281417--281721	77	4.0	77	96	0	533	24	21	21	33	1.97
281417--281721	153	2.0	153	94	1	531	24	21	21	33	1.97
281878--281939	3	20.3	3	80	9	72	38	1	0	59	1.07
283686--283739	28	1.9	29	82	14	69	35	1	3	59	1.26
287210--287237	2	14.0	2	100	0	56	50	0	0	50	1.00
287319--287368	6	8.5	6	78	12	59	16	2	0	82	0.77
287327--287358	17	1.9	16	93	6	55	15	3	0	81	0.82
287310--287379	23	3.1	21	78	15	70	15	5	0	78	0.93
287310--287364	23	2.5	24	85	11	73	14	3	0	81	0.82
289754--289790	18	2.2	18	90	9	60	16	5	5	72	1.21
297395--297419	8	3.1	8	100	0	50	36	12	12	40	1.79
297858--297913	6	9.7	6	78	5	62	14	5	0	80	0.88
297840--297896	21	2.6	22	83	5	62	14	10	0	75	1.05
297861--297924	29	2.2	29	88	2	94	15	7	0	76	1.00
299518--299576	2	29.5	2	100	0	118	50	0	0	49	1.00
302337--302363	2	13.5	2	100	0	54	48	0	0	51	1.00
304245--304329	30	2.8	32	71	18	81	45	5	11	36	1.65
316775--317973	106	11.6	106	90	3	1803	33	25	17	23	1.97
317332--317487	43	3.4	43	68	14	116	34	25	18	21	1.96
320011--320047	2	18.5	2	100	0	74	48	0	0	51	1.00
321779--321852	31	2.4	31	86	0	103	51	14	12	21	1.75
324704--324742	17	2.4	16	80	20	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324704--324747	19	2.3	19	92	7	72	22	0	0	77	0.77
328902--328942	2	20.5	2	94	0	73	53	0	0	46	1.00
330462--330592	37	3.6	37	82	6	151	29	17	13	39	1.88
330553--330897	99	3.4	100	76	8	290	32	17	12	37	1.87
330853--330933	39	2.1	39	81	4	94	27	14	12	45	1.81
334701--334753	3	17.7	3	100	0	106	66	0	0	33	0.92
338407--338609	112	1.8	112	92	3	347	46	11	3	38	1.57
339319--339377	31	1.9	31	82	6	75	8	33	5	52	1.54
344461--344581	59	2.1	58	89	6	181	24	16	21	37	1.94
344700--344734	12	3.0	12	87	4	54	11	17	8	62	1.52
349000--349135	59	2.5	54	84	10	163	20	16	25	36	1.94
349031--349151	59	2.1	59	95	0	215	23	19	23	33	1.97
350978--351004	2	13.5	2	100	0	54	48	0	0	51	1.00
351118--351167	2	25.5	2	91	4	84	48	2	0	50	1.12
352892--352931	17	2.3	18	86	4	55	60	2	2	35	1.24
353407--353458	24	2.2	24	86	3	70	11	23	17	48	1.79
353414--353459	24	2.0	23	91	4	74	10	23	17	47	1.79
360753--360799	25	1.9	25	82	4	60	14	10	4	70	1.31
370721--370779	27	2.2	27	84	3	75	37	6	3	52	1.45
372052--372085	9	3.7	9	84	7	50	23	0	2	73	0.97
372886--372934	25	2.0	25	100	0	98	24	12	20	42	1.86
372986--373034	24	2.0	24	100	0	98	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379393--379445	21	2.5	21	87	0	79	20	24	18	35	1.95
379435--379547	20	5.7	20	94	0	172	38	21	20	20	1.94
379534--379600	20	3.3	20	91	0	89	31	23	19	25	1.98
379547--379601	20	2.8	20	94	0	92	29	21	18	30	1.97
380687--380722	14	2.5	14	90	4	54	58	22	11	8	1.59
381853--382031	20	9.6	20	78	16	179	17	18	21	41	1.90
383905--383974	20	3.5	20	90	0	86	41	25	17	15	1.89
383945--384017	33	2.2	34	82	7	87	41	26	19	13	1.88
384156--384196	21	2.0	21	85	9	57	51	9	14	24	1.72
384344--384397	22	2.5	22	84	0	72	22	18	37	22	1.95
384583--384673	20	4.6	20	95	0	164	19	20	19	39	1.93
384675--384717	21	2.0	21	86	0	59	41	18	20	18	1.90
385900--385960	31	2.0	31	96	0	113	24	4	13	57	1.56
387257--387333	32	2.4	32	93	0	127	18	10	16	54	1.70
389223--389252	2	15.0	2	100	0	60	50	0	0	50	1.00
392387--392465	37	2.1	38	88	2	115	21	17	21	39	1.93
392321--392623	116	2.7	114	86	3	425	23	19	24	33	1.97
392525--392585	32	1.9	32	100	0	122	26	19	19	34	1.96
392573--392677	42	2.5	42	80	4	115	27	22	28	20	1.99
394917--394960	20	2.1	21	87	4	63	4	11	0	84	0.77
395220--395247	2	14.0	2	100	0	56	50	0	0	50	1.00
397347--397378	13	2.6	13	90	9	50	43	15	15	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404219--404345	37	3.4	37	89	5	193	20	17	23	38	1.93
406656--406754	16	6.1	16	84	10	114	2	16	0	81	0.78
406661--406743	5	16.4	5	76	16	73	0	16	0	83	0.65
406661--406749	38	2.3	39	88	9	130	1	16	0	82	0.74
413339--413368	2	15.5	2	93	6	53	50	0	0	50	1.00
417443--417488	21	2.1	22	88	4	67	32	10	2	54	1.47
418376--418413	19	2.0	19	94	0	67	31	5	28	34	1.80
418373--418461	19	4.3	20	71	17	65	35	4	26	32	1.77
418824--418892	21	3.3	21	74	11	70	17	17	27	37	1.92
418839--418907	20	3.4	20	80	4	93	20	18	28	31	1.96
418824--418907	41	2.0	41	95	0	150	19	17	27	35	1.94
420178--420247	23	3.2	23	66	15	67	31	7	21	40	1.80
420165--420251	42	2.1	42	95	0	156	31	6	24	37	1.82
420551--420766	108	2.0	108	94	0	378	21	12	18	47	1.81
426915--426961	20	2.4	20	96	3	87	8	0	21	70	1.14
427280--427418	70	2.0	71	83	7	176	33	10	9	46	1.71
442666--442692	14	1.9	14	100	0	54	59	7	0	33	1.25
444793--444838	23	2.1	23	88	8	69	56	2	0	41	1.11
447558--447617	31	1.9	31	93	0	102	36	18	21	23	1.95
451666--451716	22	2.3	22	80	6	59	43	3	1	50	1.31
452120--452181	26	2.3	26	79	15	65	48	0	3	48	1.17
453231--453285	19	2.9	18	83	8	56	36	9	16	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453453--453506	2	27.0	2	100	0	108	50	0	0	50	1.00
454098--454144	21	2.2	21	96	0	85	17	10	21	51	1.75
463539--463603	3	21.3	3	78	9	69	29	4	1	64	1.22
463527--463605	15	5.4	15	75	11	58	30	3	1	64	1.19
463521--463584	34	2.0	30	85	11	83	26	3	3	67	1.21
471697--471933	105	2.3	105	84	10	299	30	19	12	37	1.89
471884--471960	36	2.1	36	83	4	102	31	22	10	36	1.88
472284--472370	28	3.1	27	86	6	111	33	8	13	44	1.73
472366--472467	52	2.0	52	86	7	145	34	12	17	35	1.88
472455--472585	30	4.1	30	69	19	88	32	11	15	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14