genome.fa.s7938.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845919--845967	5	9.6	5	97	2	89	63	0	18	18	1.32
845966--845990	11	2.3	11	100	0	50	84	0	0	16	0.63
847841--848726	106	8.5	106	87	4	1228	23	17	25	33	1.96
848518--848711	94	2.1	94	93	0	325	24	17	24	33	1.96
852849--852894	3	15.3	3	91	8	76	69	0	0	30	0.89
852849--852933	22	3.7	22	76	18	66	72	0	3	23	0.99
854216--854264	2	26.5	2	84	15	70	51	0	0	48	1.00
866147--866186	20	1.9	19	85	14	53	15	17	5	62	1.49
866657--866691	3	11.7	3	88	11	54	62	2	0	34	1.10
867339--867368	11	2.8	11	95	5	53	66	0	0	33	0.92
867434--867473	14	2.8	15	88	7	57	77	0	2	20	0.88
867419--867471	18	2.9	18	80	2	52	75	0	3	20	0.96
867530--867560	4	7.8	4	92	0	53	70	3	0	25	1.02
867497--867541	18	2.6	17	83	10	56	71	0	11	17	1.14
867709--867754	20	2.2	22	88	7	69	56	15	13	15	1.68
872443--872899	202	2.3	200	80	7	455	38	19	10	31	1.86
877791--877841	16	3.2	17	83	8	63	27	1	0	70	0.98
888114--888202	40	2.2	40	95	0	160	41	19	14	24	1.89
888139--888205	20	3.3	20	65	0	62	43	22	13	20	1.87
895752--895855	31	3.4	31	89	2	165	53	10	13	22	1.69
895752--895892	61	2.3	61	82	6	160	52	9	13	24	1.70
895961--896035	29	2.5	30	87	8	100	48	16	12	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896127--896210	2	42.0	2	100	0	168	50	0	0	50	1.00
896440--896482	5	8.2	5	85	10	59	23	0	2	74	0.93
896440--896482	11	4.1	10	85	11	59	23	0	2	74	0.93
900346--900387	2	21.0	2	100	0	84	50	0	0	50	1.00
904100--904209	23	4.9	23	82	12	140	29	26	21	22	1.99
904203--904273	21	3.4	21	82	3	81	36	29	12	21	1.90
905595--905645	13	3.5	14	85	15	68	3	13	31	50	1.60
906755--906779	5	5.0	5	100	0	50	40	40	20	0	1.52
911863--911904	22	1.9	22	100	0	84	28	28	23	19	1.98
912575--912627	20	2.7	20	82	14	65	24	32	15	28	1.95
912988--913035	25	1.9	25	82	0	60	35	25	0	39	1.56
913743--913778	19	1.9	19	88	5	56	47	0	16	36	1.47
915661--915686	6	4.3	6	100	0	52	15	34	15	34	1.89
922469--922507	2	19.5	2	100	0	78	48	0	0	51	1.00
923921--924022	35	2.9	35	85	5	125	40	13	15	30	1.86
923938--924010	18	4.2	18	87	5	105	39	15	13	31	1.86
924669--924874	112	1.8	112	87	2	286	41	11	10	36	1.75
926419--926472	3	17.3	3	84	7	63	61	1	0	37	1.07
926629--926958	76	4.3	76	95	0	570	35	22	20	22	1.96
926890--927003	45	2.5	45	89	2	174	32	22	22	21	1.98
926814--927079	121	2.2	121	94	1	469	33	22	21	22	1.97
926748--927155	197	2.1	197	93	0	699	35	21	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926945--927360	76	5.5	76	94	0	706	35	21	20	23	1.96
926673--927231	273	2.1	273	94	0	967	35	21	20	22	1.96
926628--927307	349	1.9	349	94	0	1200	35	21	20	22	1.96
928036--928091	23	2.5	22	85	5	85	39	14	8	37	1.77
930422--930641	114	1.9	114	88	0	332	30	20	15	33	1.94
935446--935520	35	2.2	35	82	2	89	64	9	9	17	1.49
938086--938291	112	1.8	112	86	2	277	42	11	9	36	1.74
939807--939872	3	21.3	3	81	6	69	59	1	0	39	1.07
951033--951130	47	2.1	47	100	0	196	31	17	2	48	1.58
951499--951555	23	2.4	24	80	11	64	45	1	8	43	1.45
957579--957614	13	2.7	14	83	16	58	44	0	0	55	0.99
958444--958533	7	12.9	7	100	0	180	0	42	0	57	0.98
968468--968538	3	23.7	3	77	5	72	42	0	0	57	0.98
968462--968533	24	3.1	23	82	15	87	44	0	0	55	0.99
968468--968536	27	2.5	28	88	4	97	43	0	0	56	0.99
969800--969845	16	2.9	16	81	9	58	34	0	2	63	1.07
969793--969856	18	3.8	17	74	17	55	35	0	1	62	1.05
970546--970597	20	2.6	21	76	11	56	26	7	0	65	1.20
970582--970622	16	2.7	16	81	11	50	24	0	2	73	0.96
975154--975183	13	2.3	13	100	0	60	83	0	16	0	0.65
975150--975182	16	2.0	17	88	5	50	84	0	15	0	0.61
980683--981325	76	8.5	76	94	0	1126	22	19	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981452--981522	3	23.7	3	77	5	72	42	0	0	57	0.98
981446--981517	24	3.1	23	82	15	87	44	0	0	55	0.99
981452--981520	27	2.5	28	88	4	97	43	0	0	56	0.99
981529--981582	26	2.1	26	89	0	81	40	33	16	9	1.80
982800--982858	18	3.3	18	75	13	59	35	0	1	62	1.05
982811--982873	24	2.6	24	75	12	58	34	0	3	61	1.12
991730--991761	14	2.3	14	94	0	55	21	43	9	25	1.82
993443--993689	83	3.0	83	87	1	354	42	10	6	40	1.65
993666--993733	34	2.0	34	83	11	86	39	7	0	52	1.29
1000898--1000959	23	2.9	21	83	7	81	20	33	25	19	1.96
1000941--1000986	22	2.2	22	84	7	60	23	30	28	17	1.97
1010092--1010137	20	2.3	20	88	3	67	36	0	26	36	1.57
1012385--1012409	6	4.2	6	100	0	50	64	0	0	36	0.94
1015623--1015675	8	7.0	7	80	6	52	52	20	0	26	1.46
1015613--1015674	23	2.7	23	95	2	108	51	24	0	24	1.48
1021249--1021322	29	2.5	30	86	2	96	35	24	8	32	1.85
1021951--1022032	26	3.2	26	100	0	164	36	7	26	29	1.83
1022559--1022672	16	7.1	15	72	18	79	63	17	4	14	1.47
1022555--1022684	32	4.1	32	76	6	129	63	16	4	16	1.47
1023338--1023487	13	11.2	13	75	13	135	48	14	9	27	1.74
1023344--1023404	22	2.8	21	73	14	61	47	16	6	29	1.72
1023338--1023498	52	3.0	52	79	9	155	48	13	10	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024226--1024317	46	2.0	46	97	0	175	56	8	5	29	1.52
1025434--1025506	30	2.4	30	95	0	128	16	19	20	43	1.88
1025460--1025562	15	6.9	15	67	16	61	17	18	19	44	1.87
1025464--1025562	45	2.2	45	85	0	135	18	18	20	43	1.88
1026246--1026289	15	2.7	17	82	13	65	40	18	9	31	1.81
1026381--1026434	17	3.2	17	79	10	74	44	14	3	37	1.63
1026421--1026463	15	2.5	18	75	25	56	51	11	0	37	1.39
1026433--1026461	15	1.9	15	100	0	58	55	10	0	34	1.34
1027054--1027150	49	2.0	49	91	0	158	37	5	30	26	1.78
1027249--1027320	28	2.5	29	84	4	83	29	11	27	31	1.91
1029949--1029994	23	2.0	23	82	0	56	10	8	6	73	1.23
1030775--1031181	71	5.7	72	76	7	328	41	10	18	29	1.84
1031147--1031221	38	1.9	39	86	5	107	41	8	17	33	1.78
1031392--1031452	32	1.9	32	86	0	86	47	6	14	31	1.70
1033102--1033150	18	2.8	18	90	3	73	53	20	2	24	1.56
1035525--1035579	23	2.4	23	100	0	110	54	0	12	32	1.38
1036964--1037019	24	2.4	23	81	3	76	37	25	21	16	1.93
1037015--1037111	46	2.1	46	90	0	149	30	22	27	18	1.97
1037010--1037110	23	4.4	23	82	0	112	30	24	26	17	1.97
1037616--1037649	2	17.0	2	100	0	68	50	50	0	0	1.00
1037649--1037685	2	18.5	2	100	0	74	51	0	0	48	1.00
1051565--1051803	108	2.2	108	81	1	255	17	16	21	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051764--1051832	36	1.9	36	84	0	93	11	17	27	43	1.83
1052839--1052906	33	2.1	33	100	0	136	30	11	11	45	1.77
1053627--1053733	6	17.8	6	97	0	187	0	47	0	52	1.00
1054081--1054167	22	4.0	22	66	19	65	40	5	0	54	1.25
1057638--1057812	90	2.0	89	89	1	269	36	11	8	44	1.70
1061368--1061439	23	3.2	22	88	5	108	15	18	27	38	1.90
1073509--1073547	19	2.1	19	100	0	78	28	15	15	41	1.87
1073513--1073555	19	2.3	19	91	0	68	25	18	16	39	1.91
1081800--1081892	46	2.0	45	85	6	125	18	18	26	36	1.94
1081800--1081892	23	4.1	22	81	9	107	18	18	26	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14