genome.fa.s7938.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810051--1810102	21	2.5	21	93	3	88	40	5	9	44	1.61
1810199--1810242	23	2.0	23	82	13	56	50	9	2	38	1.47
1823093--1823177	41	2.0	42	97	2	163	36	5	27	30	1.80
1825457--1825523	22	3.0	22	88	0	107	25	25	23	25	2.00
1826183--1826215	16	2.0	17	88	5	50	39	9	18	33	1.82
1836314--1836367	3	17.7	3	84	3	72	62	0	37	0	0.95
1838061--1838102	5	8.2	5	91	2	66	19	4	0	76	0.96
1840129--1840185	24	2.4	24	100	0	114	12	19	12	56	1.67
1843830--1843861	5	6.4	5	100	0	64	21	56	21	0	1.43
1848280--1848330	21	2.4	22	74	9	52	25	7	15	50	1.71
1851460--1851505	22	2.1	22	84	8	58	52	0	0	47	1.00
1851560--1851602	22	2.0	22	86	4	61	65	2	0	32	1.06
1851566--1851623	29	2.0	29	86	3	82	68	3	0	27	1.05
1853211--1853246	17	2.1	17	94	0	63	30	22	25	22	1.99
1857247--1857285	19	2.1	19	85	0	51	61	0	2	35	1.10
1857825--1857891	31	2.1	32	86	2	91	46	5	4	43	1.48
1857841--1857921	31	2.6	31	82	3	92	46	7	6	39	1.57
1859220--1859266	22	2.1	22	100	0	94	31	46	0	21	1.51
1862978--1863127	21	7.2	21	82	8	182	31	23	21	24	1.98
1863117--1863162	21	2.2	21	84	0	56	23	23	26	26	2.00
1863123--1863170	21	2.3	21	92	0	78	20	20	29	29	1.98
1863137--1863191	21	2.6	22	81	13	62	20	21	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863914--1864036	21	5.9	20	72	12	90	34	21	21	23	1.97
1864026--1864099	21	3.5	21	88	3	96	22	22	27	27	2.00
1872022--1872323	116	2.6	116	78	4	268	38	14	20	26	1.91
1872461--1872595	35	3.9	35	78	13	145	31	14	9	45	1.77
1872459--1872590	37	3.8	36	78	16	150	29	15	9	45	1.78
1872543--1872842	134	2.3	127	80	9	320	34	16	9	39	1.81
1873767--1873858	42	2.3	41	82	14	113	47	5	18	28	1.70
1882981--1883023	20	2.2	20	86	0	59	27	18	27	25	1.98
1885097--1885167	20	3.3	20	72	14	61	38	5	12	43	1.66
1892349--1892400	19	2.7	19	93	0	77	13	11	3	71	1.28
1898034--1898243	42	5.0	42	92	0	339	26	17	13	42	1.86
1898034--1898243	84	2.5	84	96	0	375	26	17	13	42	1.86
1900164--1900612	229	2.0	227	95	0	808	44	8	7	39	1.62
1900677--1900722	20	2.3	19	89	10	74	54	10	17	17	1.70
1900844--1900890	20	2.4	19	82	10	67	53	10	17	19	1.72
1900853--1900895	20	2.3	19	88	11	63	51	11	16	20	1.75
1903117--1903181	21	3.1	21	80	6	69	40	15	27	16	1.89
1903215--1903280	33	2.0	33	90	0	105	28	0	48	22	1.51
1905074--1905123	19	2.6	19	93	0	82	32	2	10	56	1.44
1905241--1906406	198	5.9	198	98	0	2255	36	15	16	31	1.90
1905241--1906406	397	2.9	397	98	0	2257	36	15	16	31	1.90
1907867--1907928	6	10.3	6	84	6	54	40	4	32	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907883--1907932	3	16.7	3	87	0	73	38	2	32	28	1.68
1909397--1909552	78	2.0	77	96	2	287	26	17	16	39	1.90
1909473--1910139	183	3.7	183	97	0	1237	34	14	16	34	1.89
1912611--1912675	25	2.6	25	80	0	85	35	9	13	41	1.77
1913022--1913085	23	2.8	23	87	0	92	35	6	20	37	1.78
1913022--1913094	23	3.2	23	82	7	85	34	5	20	39	1.76
1913363--1913413	25	2.0	25	92	0	84	33	7	19	39	1.81
1913802--1913838	18	2.1	18	89	0	56	32	5	10	51	1.60
1913794--1913840	24	2.0	24	86	0	67	34	4	14	46	1.64
1914096--1914178	39	2.1	39	95	0	148	48	20	14	16	1.81
1914586--1914649	23	2.8	23	90	0	101	35	4	21	37	1.75
1914586--1914658	23	3.2	23	77	11	78	34	5	21	38	1.77
1914701--1915370	335	2.0	334	97	0	1277	42	8	11	38	1.70
1915632--1915705	24	3.0	24	92	2	112	9	36	8	45	1.66
1921545--1921589	16	2.9	16	84	12	51	42	0	0	57	0.98
1921665--1921755	14	6.3	16	72	19	67	37	1	1	60	1.11
1921658--1921736	16	5.1	14	73	19	59	37	1	1	59	1.14
1921658--1921758	49	2.1	48	82	15	120	36	0	0	61	1.09
1921696--1921764	13	5.5	13	76	13	65	36	1	0	62	1.04
1921665--1921767	36	2.9	34	74	17	95	36	1	0	60	1.15
1921697--1921755	22	2.6	22	84	7	66	37	0	0	62	0.95
1922754--1922793	21	2.0	21	95	5	73	15	30	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1922755--1922844	9	9.3	9	71	13	63	16	26	27	28	1.97
1922755--1922819	30	2.2	29	83	8	78	13	26	29	30	1.94
1922841--1922880	19	2.1	19	90	0	62	22	45	22	10	1.82
1922846--1922880	9	3.8	9	88	7	52	22	42	22	11	1.85
1929320--1929358	21	1.9	21	94	5	71	15	25	25	33	1.95
1929321--1929401	10	8.3	9	73	15	63	17	25	27	29	1.97
1929397--1929432	9	3.9	9	85	7	54	22	47	22	8	1.77
1933529--1933566	20	1.9	20	100	0	76	36	18	15	28	1.92
1936065--1936097	17	1.9	17	93	0	57	27	21	6	45	1.75
1936910--1936954	21	2.1	21	84	8	56	26	6	6	60	1.47
1941067--1941111	20	2.2	20	88	0	63	33	22	13	31	1.92
1942762--1942834	27	2.7	27	75	8	78	46	19	9	24	1.79
1943554--1943601	25	1.9	25	86	0	69	37	6	10	45	1.64
1947158--1947205	15	3.1	17	71	17	50	58	0	10	31	1.32
1947795--1947834	20	2.0	20	90	0	62	37	22	27	12	1.90
1947805--1947880	30	2.6	29	79	6	89	36	21	27	14	1.92
1948321--1948353	17	2.0	17	88	5	50	36	0	3	60	1.12
1950227--1950269	2	22.0	2	86	13	63	48	0	2	48	1.14
1952758--1952782	13	1.9	13	100	0	50	24	32	12	32	1.91
1952682--1952863	20	9.6	20	71	16	111	34	23	15	26	1.95
1952927--1952951	8	3.1	8	100	0	50	36	40	0	24	1.55
1953619--1953652	12	2.8	12	90	0	50	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953778--1953831	24	2.2	24	90	0	81	22	18	18	40	1.91
1962025--1962085	23	2.9	21	85	7	79	22	36	22	18	1.95
1962067--1962106	21	1.9	21	89	0	62	25	40	25	10	1.86
1964422--1964451	13	2.2	14	94	5	53	46	13	0	40	1.43
1965958--1966022	34	1.9	34	87	0	94	38	18	20	23	1.93
1966024--1966077	20	2.7	20	91	0	90	22	20	22	35	1.96
1966168--1966217	25	2.0	25	88	0	73	28	8	18	46	1.77
1966604--1966640	18	2.1	18	89	0	56	32	5	8	54	1.53
1966944--1967030	39	2.2	39	97	0	165	47	20	14	17	1.83
1967397--1967537	61	2.2	63	83	8	171	50	17	2	30	1.57
1968915--1969016	21	4.9	21	81	9	109	20	16	36	26	1.94
1970054--1970162	31	3.5	31	96	0	191	40	22	18	19	1.92
1971043--1971096	20	2.6	21	91	5	83	20	24	25	29	1.99
1971989--1972031	17	2.6	16	82	7	50	41	23	0	34	1.55
1974818--1974942	31	4.0	31	85	2	153	40	23	16	20	1.91
1975826--1975885	20	2.9	21	90	7	95	18	26	25	30	1.98
1978685--1978727	22	2.0	22	90	0	68	25	13	37	23	1.92
1978859--1978990	20	6.2	20	75	14	122	17	15	22	44	1.86
1979020--1979067	20	2.4	20	82	6	62	27	8	35	29	1.86
1979363--1979464	3	33.7	3	82	2	87	43	0	0	55	1.06
1980122--1980146	11	2.3	11	100	0	50	32	32	28	8	1.86
1983190--1983292	3	33.7	3	82	3	98	40	0	0	58	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1983953--1983977	11	2.3	11	100	0	50	32	32	28	8	1.86
1985542--1985589	18	2.5	20	80	10	55	27	6	2	64	1.28
1992830--1993005	76	2.3	76	84	2	221	34	15	21	28	1.94
1993866--1994140	54	5.1	54	95	0	478	40	14	20	24	1.90
1994491--1994545	22	2.5	22	93	0	101	34	10	14	40	1.81
1995393--1996254	76	11.4	76	94	1	1473	23	19	21	35	1.96
1995393--1996254	151	5.7	151	94	1	1487	23	19	21	35	1.96
1996384--1996485	3	33.7	3	82	2	123	38	0	1	59	1.09
1997146--1997170	11	2.3	11	100	0	50	32	32	28	8	1.86
1999312--1999390	39	2.0	39	97	0	149	31	16	26	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14