genome.fa.s7938.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472472--472796	67	5.0	67	76	8	287	30	14	13	41	1.85
472471--472787	129	2.4	129	76	10	297	29	14	14	41	1.85
473119--473180	28	2.2	28	85	5	81	24	9	12	53	1.69
473226--473710	40	11.4	40	71	15	289	25	31	17	25	1.97
473259--473768	40	11.7	45	72	15	286	25	31	17	25	1.97
473219--473637	89	4.9	85	75	11	322	25	31	18	24	1.97
473229--473775	129	4.2	129	92	2	864	25	31	17	25	1.97
473927--473991	3	21.3	3	81	9	78	29	3	1	66	1.16
473912--473993	31	2.6	30	83	9	85	29	2	1	67	1.11
474445--474472	11	2.5	11	100	0	56	89	0	10	0	0.49
479159--479197	19	2.1	19	95	0	69	20	38	15	25	1.92
479180--479285	45	2.3	46	85	6	153	30	22	16	31	1.95
485076--485125	22	2.4	21	83	12	59	30	22	18	30	1.97
486658--486701	21	2.1	21	86	0	61	9	36	15	38	1.80
487708--487746	19	2.1	19	95	0	69	20	38	15	25	1.92
487694--487852	64	2.5	63	84	7	205	30	26	16	27	1.97
490284--490311	13	2.2	13	100	0	56	39	0	46	14	1.44
490848--490876	12	2.4	12	100	0	58	37	0	13	48	1.43
490924--490952	2	14.5	2	100	0	58	48	0	0	51	1.00
492546--492575	11	2.7	11	100	0	60	63	0	30	6	1.20
493694--493891	99	2.0	99	98	0	387	32	10	20	36	1.86
495842--495897	25	2.3	25	93	3	96	30	23	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500644--500675	16	1.9	17	93	6	57	40	3	37	18	1.67
511327--511365	21	1.9	20	89	5	60	7	10	7	74	1.22
518027--518055	15	1.9	15	100	0	58	13	41	0	44	1.44
523443--523485	19	2.3	19	84	15	54	51	4	2	41	1.35
547259--547297	19	2.0	20	85	5	53	41	7	5	46	1.55
552684--552715	15	2.1	15	100	0	64	75	6	6	12	1.19
552712--552776	27	2.4	27	89	5	96	55	3	7	33	1.44
553644--553703	29	2.1	28	96	3	111	28	13	10	48	1.74
558312--558370	29	2.1	28	96	3	109	23	13	11	50	1.74
564729--564790	23	2.7	23	90	2	90	22	33	25	17	1.96
566341--566376	18	2.0	18	88	0	54	52	25	19	2	1.59
568542--569427	81	11.1	81	88	3	1280	35	11	21	31	1.89
569394--569435	22	1.9	22	85	0	57	40	11	21	26	1.88
570699--570752	26	2.3	23	80	20	60	14	50	0	35	1.44
571062--571100	15	2.6	16	92	8	64	61	23	5	10	1.48
572599--572680	22	3.7	23	82	9	91	23	21	30	24	1.99
575993--576045	21	2.5	21	83	16	74	58	11	7	22	1.57
576458--576677	117	1.9	117	83	5	284	28	14	8	49	1.71
582562--582621	30	2.0	30	93	0	102	30	5	21	43	1.74
582712--582770	13	4.9	13	78	19	74	18	37	20	23	1.94
582702--582770	34	2.0	34	97	0	129	20	36	20	23	1.95
582725--582772	21	2.3	21	100	0	96	18	37	18	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582838--582910	21	3.5	21	92	1	103	21	32	16	28	1.95
586101--586160	30	2.0	30	93	0	102	30	5	21	43	1.74
586241--586298	21	2.8	21	100	0	116	20	36	18	24	1.95
586361--586436	21	3.7	21	94	1	127	19	32	18	28	1.96
590013--590047	17	2.0	18	88	5	54	40	8	11	40	1.72
590505--590547	22	2.0	22	90	0	68	34	18	20	25	1.96
595289--595343	22	2.5	22	93	0	92	25	23	27	23	2.00
595293--595353	22	2.8	22	87	0	68	31	21	22	24	1.98
598099--598152	17	3.1	17	78	2	63	24	48	16	11	1.79
605097--605168	18	4.1	18	81	1	74	19	41	23	15	1.89
605158--605190	7	4.7	7	88	11	50	15	27	30	27	1.96
612325--612395	18	4.0	18	83	3	81	18	43	23	14	1.86
619503--619573	18	4.0	18	77	3	90	18	46	19	15	1.84
624244--624291	13	3.7	13	85	0	69	47	0	45	6	1.27
627544--627635	35	2.6	35	86	3	114	41	22	15	20	1.90
627675--627752	35	2.2	35	88	4	113	42	23	12	21	1.87
627557--628030	117	4.1	117	93	1	797	40	21	13	24	1.89
637043--637083	21	2.0	21	85	0	55	56	2	26	14	1.51
642287--642338	27	1.9	27	88	0	77	25	7	42	25	1.81
646884--646935	27	1.9	27	88	0	77	25	7	42	25	1.81
648797--648851	28	2.0	28	96	0	101	41	9	9	40	1.68
648978--649030	20	2.7	20	96	0	97	45	0	7	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648974--649045	24	3.3	20	70	19	54	48	0	5	45	1.25
649141--649292	30	5.0	30	72	12	89	59	1	7	32	1.33
649322--649389	28	2.4	27	83	11	84	44	2	1	51	1.25
651050--651101	24	2.2	24	82	0	59	50	17	11	21	1.77
651066--651191	24	5.2	24	85	7	150	42	18	16	23	1.89
652296--652331	18	2.0	18	88	0	54	30	16	0	52	1.44
653644--653678	8	4.5	8	92	7	63	22	25	37	14	1.92
653644--653678	15	2.2	16	95	5	63	22	25	37	14	1.92
653678--653721	13	3.4	13	93	0	79	25	15	43	15	1.87
655666--655698	2	16.5	2	100	0	66	51	0	0	48	1.00
655889--655940	24	2.2	24	82	0	59	50	17	11	21	1.77
655905--656030	24	5.2	24	85	7	150	42	18	16	23	1.89
657134--657169	18	2.0	18	88	0	54	30	16	0	52	1.44
658481--658528	8	6.5	8	81	18	68	20	25	39	14	1.91
658508--658571	13	4.5	13	80	17	74	21	15	46	15	1.83
658510--658551	18	2.3	18	91	0	66	16	16	50	16	1.79
664268--664323	14	4.3	14	78	17	66	10	12	23	53	1.69
664275--664343	24	2.9	24	86	0	102	13	10	18	57	1.63
664998--665071	10	7.6	10	72	22	68	9	8	20	62	1.51
665003--665067	16	4.1	16	87	0	94	7	9	21	61	1.51
664996--665064	32	2.2	32	89	0	102	10	7	20	62	1.50
665136--665176	16	2.7	16	85	7	59	12	9	17	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666085--666118	12	2.8	12	90	4	50	38	29	17	14	1.90
668582--668894	156	2.0	156	98	0	608	25	9	13	51	1.71
668983--669056	7	10.7	7	77	2	78	18	2	36	41	1.65
669080--669147	32	2.1	32	97	0	127	27	7	10	54	1.61
669210--669268	11	5.5	11	73	15	52	38	0	1	59	1.08
669374--669405	11	3.0	11	95	4	57	18	25	37	18	1.94
669375--669407	5	6.4	5	93	6	57	18	24	36	21	1.95
669615--669643	4	7.2	4	100	0	58	0	24	0	75	0.80
671902--671935	2	17.0	2	100	0	68	0	50	0	50	1.00
674344--674368	13	1.9	13	100	0	50	32	28	0	40	1.57
678302--678359	24	2.4	24	94	0	98	20	37	17	24	1.93
680209--680268	27	2.4	25	86	8	77	30	41	0	28	1.56
680257--680309	6	8.3	6	82	12	52	26	49	0	24	1.51
680246--680306	27	2.2	28	80	8	81	26	45	0	27	1.54
680257--680312	27	2.1	27	83	6	69	26	50	0	23	1.50
689754--689804	18	2.8	17	82	14	50	68	1	5	23	1.22
689773--689802	15	2.0	15	93	0	51	70	3	0	26	1.03
689776--689824	18	2.8	16	84	12	53	61	4	0	34	1.15
689886--689952	32	2.1	31	84	13	84	44	5	4	44	1.48
689912--690104	37	5.3	35	70	18	112	43	6	4	45	1.49
690013--690156	39	3.8	37	74	10	114	41	8	6	43	1.62
692163--692204	22	2.0	22	86	9	61	54	0	7	38	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692626--692680	23	2.4	23	81	6	76	38	5	0	56	1.23
694616--694651	2	18.0	2	100	0	72	50	0	0	50	1.00
697079--697655	256	2.3	253	81	16	692	26	12	19	40	1.88
697079--697684	251	2.4	244	81	14	688	26	12	20	40	1.88
698046--698091	18	2.6	17	93	3	74	28	32	6	32	1.83
705232--705332	37	2.7	37	89	0	139	41	13	12	31	1.83
705729--705773	21	2.1	22	83	4	56	35	0	2	62	1.08
705974--706072	21	4.5	22	83	8	89	28	2	1	68	1.07
705997--706052	19	2.8	19	89	5	76	26	0	0	73	0.84
706030--706073	22	2.0	22	86	0	61	22	2	0	75	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14