genome.fa.s7938.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2808856

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1662 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086334--1086363	13	2.3	13	100	0	60	33	10	6	50	1.62
1088045--1088413	183	2.0	183	100	0	738	43	8	5	42	1.57
1094006--1094229	110	2.0	110	99	0	439	29	22	22	25	1.99
1094407--1094476	24	2.9	24	93	0	113	38	20	1	40	1.61
1094554--1094699	79	1.8	79	92	0	247	25	15	17	41	1.89
1101674--1101717	19	2.3	19	84	7	54	52	4	4	38	1.42
1102105--1102137	16	2.1	16	100	0	66	57	24	12	6	1.57
1102225--1102275	26	2.0	26	84	7	68	58	17	11	11	1.62
1102207--1102271	16	4.1	16	91	0	103	56	20	12	10	1.65
1103365--1103437	24	3.0	23	78	9	83	50	24	15	9	1.73
1103365--1103436	34	2.1	34	92	0	117	51	25	13	9	1.72
1103365--1103422	10	5.4	10	75	15	53	51	24	13	10	1.72
1103374--1103447	24	3.1	24	74	14	71	47	27	14	10	1.78
1103630--1103673	17	2.6	17	100	0	88	45	0	0	54	0.99
1104119--1104155	16	2.3	16	85	0	56	43	0	0	56	0.99
1104254--1104287	16	2.1	17	88	5	52	32	14	11	41	1.82
1104644--1104689	19	2.4	19	79	10	58	63	2	0	34	1.07
1105480--1105571	27	3.7	27	70	24	103	52	2	2	43	1.25
1105496--1105564	20	3.2	20	67	25	59	52	2	2	42	1.31
1105490--1105558	16	4.5	16	67	10	54	55	2	2	39	1.30
1108448--1108484	3	12.3	3	94	0	65	29	0	0	70	0.88
1111439--1111484	17	2.8	16	90	9	74	26	8	30	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115258--1115376	36	3.3	36	81	4	132	31	18	10	39	1.85
1115510--1115656	31	4.5	31	68	18	93	31	15	14	38	1.88
1115544--1115826	68	4.2	66	81	6	295	27	15	16	39	1.89
1115594--1115826	66	3.5	66	83	5	281	25	16	16	40	1.90
1121064--1121158	30	3.2	30	81	1	111	23	25	21	30	1.99
1121971--1122036	23	2.9	23	90	0	96	31	25	19	22	1.98
1130692--1130729	8	4.6	8	96	3	67	0	0	23	76	0.79
1131149--1131179	15	2.1	15	93	0	53	29	9	19	41	1.83
1136175--1136234	32	1.9	31	83	10	77	51	1	1	45	1.21
1138118--1138146	4	7.2	4	100	0	58	24	0	0	75	0.80
1138620--1138652	16	2.1	16	94	0	57	57	0	0	42	0.98
1142369--1142416	25	1.9	26	87	8	73	77	0	16	6	0.97
1142368--1142428	20	3.3	20	73	17	62	80	0	14	4	0.87
1143729--1143909	75	2.4	75	85	0	245	34	17	22	25	1.96
1144097--1144208	54	2.1	54	81	0	125	38	11	16	33	1.85
1145293--1145682	73	5.3	73	92	1	586	30	15	14	39	1.88
1145829--1146159	122	2.7	122	92	0	545	39	16	19	25	1.91
1146073--1146432	134	2.6	134	83	5	429	37	14	20	27	1.92
1147780--1147823	16	2.6	17	85	3	54	22	4	4	68	1.27
1147928--1147960	4	8.2	4	100	0	66	24	0	0	75	0.80
1148134--1148160	2	13.5	2	100	0	54	51	0	0	48	1.00
1148189--1148227	17	2.3	17	86	8	53	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148195--1148453	144	1.8	143	85	4	369	38	6	8	45	1.61
1150258--1150322	20	3.0	22	80	10	73	46	1	0	52	1.10
1154655--1154728	29	2.5	30	82	2	96	20	24	24	31	1.98
1154724--1154777	19	2.9	18	81	10	65	24	46	20	9	1.79
1160521--1160576	27	2.1	27	89	0	85	46	5	5	42	1.49
1165049--1165086	20	1.9	20	94	0	67	23	21	28	26	1.99
1165340--1165393	20	2.6	21	75	21	60	33	20	27	18	1.96
1175439--1175487	23	2.1	23	88	7	73	57	12	2	28	1.46
1182341--1182558	119	1.9	116	85	4	303	42	11	16	29	1.83
1189122--1189161	20	2.0	21	95	5	73	47	5	5	42	1.47
1191352--1191699	176	2.0	177	97	0	662	39	10	12	37	1.78
1192052--1192119	23	3.0	23	70	8	66	48	5	23	22	1.72
1193244--1193318	34	2.2	34	95	0	132	58	6	5	29	1.46
1194305--1194360	30	1.9	28	92	7	94	51	8	0	39	1.33
1194463--1194608	73	2.0	73	97	0	274	28	14	18	39	1.90
1194587--1194652	23	2.9	23	86	4	89	24	18	18	39	1.92
1202469--1202541	40	1.9	37	81	13	87	39	16	17	26	1.91
1202869--1202933	10	6.1	10	72	13	58	12	12	18	56	1.66
1202870--1202920	24	2.1	24	81	0	57	11	13	19	54	1.69
1202866--1202930	34	1.9	34	87	0	94	10	12	20	56	1.65
1203446--1203470	8	3.1	8	100	0	50	40	0	0	60	0.97
1203801--1203833	17	1.9	17	88	11	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203853--1203881	3	9.7	3	100	0	58	65	0	0	34	0.93
1204699--1204755	21	2.8	20	81	5	69	35	24	10	29	1.89
1204698--1204775	41	1.9	40	86	2	111	35	21	11	30	1.89
1204699--1204770	20	3.5	20	78	10	74	38	20	12	27	1.89
1204793--1204844	21	2.5	21	87	6	70	32	21	23	23	1.98
1212411--1212489	31	2.5	32	91	4	133	22	27	3	45	1.70
1215347--1215398	20	2.6	20	96	0	95	36	19	19	25	1.95
1215432--1215466	18	2.0	17	88	5	52	34	14	28	22	1.93
1215367--1215637	107	2.5	107	87	0	389	38	19	16	25	1.93
1216997--1217070	21	3.6	21	77	3	96	20	18	27	33	1.96
1216996--1217094	41	2.4	41	100	0	198	18	19	25	37	1.94
1217018--1217090	20	3.6	20	77	3	92	15	21	24	38	1.92
1217269--1217356	21	4.2	21	73	11	90	37	28	18	15	1.92
1218809--1218898	44	2.0	44	97	0	171	54	15	4	25	1.60
1218816--1218888	24	3.2	24	62	15	64	54	12	5	27	1.59
1225011--1225073	20	2.9	21	79	9	65	15	25	34	23	1.95
1228822--1228863	21	2.0	21	86	9	59	35	7	2	54	1.41
1231525--1231587	20	3.2	20	95	0	108	36	19	19	25	1.94
1234904--1234997	20	4.7	19	81	12	109	34	22	22	21	1.97
1234904--1234997	40	2.3	40	87	3	136	34	22	22	21	1.97
1235002--1235100	19	5.4	19	73	17	93	48	16	19	16	1.81
1235117--1235188	33	2.1	34	89	2	110	13	23	16	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1235132--1235201	33	2.1	33	86	0	95	14	22	17	45	1.84
1235351--1235445	32	2.9	34	87	6	140	13	20	21	45	1.85
1235083--1235550	233	2.0	234	94	2	816	32	19	14	33	1.92
1235544--1235580	14	2.6	14	86	0	56	48	21	0	29	1.50
1236928--1237030	21	4.9	22	74	11	65	23	19	35	21	1.96
1236942--1237034	42	2.2	42	80	3	107	23	17	38	20	1.93
1237513--1237581	20	3.5	20	87	0	93	37	23	18	20	1.94
1237620--1237668	20	2.5	20	86	0	71	34	24	20	20	1.96
1237713--1237929	20	11.5	20	83	11	280	19	20	20	40	1.92
1237675--1237929	40	6.9	40	78	14	280	18	20	20	40	1.92
1237675--1237872	93	2.1	93	91	0	315	19	20	19	40	1.92
1237731--1237929	74	2.7	73	96	0	362	18	20	20	40	1.92
1239741--1239778	18	2.1	19	95	5	69	52	21	15	10	1.72
1239743--1239810	20	3.5	20	84	4	77	41	26	16	16	1.88
1239741--1239839	20	5.4	19	73	17	59	44	24	17	14	1.85
1239853--1239899	20	2.3	20	88	0	67	21	19	23	36	1.95
1240213--1240274	18	3.0	22	69	26	62	17	16	38	27	1.91
1240451--1240502	20	2.6	20	87	0	77	25	17	25	32	1.97
1240489--1240545	20	2.8	20	94	0	96	24	19	17	38	1.93
1241179--1241491	65	4.8	65	97	0	581	25	23	8	42	1.82
1241576--1241617	22	1.9	22	90	0	66	42	7	9	40	1.65
1247483--1247538	21	2.7	21	94	0	103	30	14	21	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1252935--1252981	19	2.5	19	92	0	76	44	12	14	27	1.82
1253909--1253984	15	5.1	15	76	7	59	50	15	3	30	1.63
1253909--1253986	30	2.6	30	76	9	88	48	17	3	29	1.65
1255632--1255679	23	2.1	23	84	0	60	39	22	22	14	1.91
1255662--1255744	21	3.8	21	77	7	78	36	26	19	18	1.94
1268101--1268142	16	2.6	16	82	17	52	50	0	2	47	1.14
1274074--1274110	19	1.9	19	94	0	65	51	0	0	48	1.00
1275205--1275254	24	2.1	23	85	3	64	56	0	2	42	1.11
1277197--1277661	130	3.5	130	84	3	531	27	16	29	26	1.97
1289457--1289501	19	2.4	19	85	7	56	40	4	4	51	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14