genome.fa.s7960.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  2  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184602--184681	33	2.4	33	91	0	133	46	22	21	10	1.81
184705--184800	19	4.9	20	80	5	99	8	19	22	48	1.75
184696--184806	58	1.9	58	85	3	152	10	19	21	47	1.80
184706--184806	39	2.6	38	84	3	121	8	20	20	49	1.76
184895--185270	94	4.1	94	91	3	568	47	18	12	21	1.81
185674--185714	18	2.2	18	86	8	55	17	12	46	24	1.82
186892--186967	19	3.9	19	80	10	91	46	19	22	11	1.82
186989--187048	19	3.1	19	85	2	84	11	21	21	45	1.84
187584--187923	20	16.9	20	79	4	270	24	18	20	36	1.95
187584--187923	40	8.4	40	83	2	306	24	18	20	36	1.95
187667--187764	21	4.8	21	77	7	94	36	18	20	24	1.94
187644--187882	101	2.4	100	78	4	230	26	19	20	33	1.96
189014--189058	2	22.5	2	100	0	90	48	0	0	51	1.00
193852--193890	15	2.6	15	79	0	51	79	2	0	17	0.84
193853--193901	22	2.2	23	85	3	64	79	2	2	16	0.92
198142--198192	23	2.3	23	79	3	59	56	3	7	31	1.46
198159--198224	18	3.6	18	70	11	62	56	4	6	33	1.44
202523--202601	21	3.8	21	96	0	140	18	16	41	22	1.90
205296--205365	31	2.3	31	78	9	72	22	11	2	62	1.41
205624--205868	117	2.1	117	86	4	334	24	23	15	35	1.94
207301--207595	54	5.5	54	79	9	284	41	19	9	30	1.82
208884--208922	20	2.0	20	84	0	51	17	12	17	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210361--210423	19	3.3	19	75	0	72	19	34	14	31	1.91
230568--230664	47	2.1	47	100	0	194	24	23	23	27	2.00
230747--230771	13	1.9	13	100	0	50	84	0	0	16	0.63
238760--238799	21	1.9	21	85	10	55	30	22	15	32	1.94
242462--242501	21	2.0	20	85	5	53	15	20	22	42	1.88
243279--243449	39	4.4	39	77	4	157	18	25	22	33	1.96
243279--243449	78	2.2	78	80	4	184	18	25	22	33	1.96
243461--243492	12	2.7	12	100	0	64	15	6	50	28	1.68
250325--250440	39	3.0	39	88	0	178	13	23	27	35	1.93
250435--250509	39	1.9	39	83	0	96	24	22	20	33	1.97
250324--250515	78	2.5	77	79	5	188	17	24	23	33	1.96
251456--251494	20	2.0	20	94	0	69	28	33	25	12	1.93
253147--253186	21	1.9	21	89	0	62	55	7	7	30	1.56
256981--257039	23	2.5	24	81	13	70	18	32	25	23	1.97
257446--257488	20	2.2	20	87	8	61	18	2	13	65	1.38
264606--264638	2	16.5	2	100	0	66	48	0	0	51	1.00
271166--271214	24	2.0	24	100	0	98	42	12	12	32	1.79
272481--272539	31	1.9	31	82	3	75	35	18	6	38	1.78
274108--274222	8	14.1	8	85	9	121	0	11	0	86	0.65
274110--274224	17	6.7	17	83	7	126	0	10	0	87	0.62
274110--274207	33	3.0	32	88	4	133	1	9	0	89	0.52
274110--274195	1	86.0	1	83	0	109	1	6	0	91	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274123--274224	33	3.3	31	84	12	131	0	11	0	87	0.60
276878--276934	23	2.6	23	91	5	91	29	19	3	47	1.66
280639--280677	2	19.5	2	100	0	78	51	0	0	48	1.00
283804--283861	25	2.3	25	87	0	80	25	18	24	31	1.98
288588--288678	39	2.3	39	84	0	119	36	20	25	17	1.94
290475--290521	22	2.1	23	84	4	60	42	2	2	53	1.25
290469--290548	32	2.5	33	76	14	85	45	3	1	50	1.28
290638--290706	19	3.6	18	71	21	52	47	2	1	47	1.25
290701--290745	23	2.0	23	86	0	63	53	2	2	42	1.25
290843--290878	19	2.0	19	89	10	58	50	0	0	50	1.00
291405--291728	161	2.0	162	99	0	641	36	14	13	34	1.86
293275--293320	21	2.1	22	92	4	76	41	0	10	47	1.38
296846--296920	29	2.6	29	91	0	123	21	26	33	18	1.96
302359--302455	32	3.0	32	100	0	194	31	24	15	27	1.95
304056--304096	18	2.2	19	95	4	75	46	24	4	24	1.72
306434--306467	15	2.3	15	94	0	59	23	5	41	29	1.78
306653--306704	15	3.5	15	78	0	68	23	15	42	19	1.89
306633--306704	30	2.4	30	95	0	126	25	16	38	19	1.92
310241--310294	28	2.0	27	82	10	65	59	0	31	9	1.29
320277--320380	2	51.5	2	85	9	140	47	2	1	48	1.28
321643--321672	9	3.3	9	95	0	51	23	20	6	50	1.71
324479--324655	92	1.9	92	87	1	257	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326025--326282	110	2.4	110	81	6	294	33	23	18	24	1.97
326803--326931	37	3.6	35	84	10	163	28	18	10	41	1.84
326899--327261	65	5.4	65	73	13	311	28	19	11	41	1.86
326827--327216	36	11.2	36	73	15	320	28	17	11	42	1.84
327177--327376	102	2.0	102	85	2	276	27	22	12	38	1.90
326828--327306	138	3.5	138	92	2	759	27	18	11	41	1.86
329179--329203	2	12.5	2	100	0	50	48	0	0	52	1.00
329422--329480	29	2.1	27	84	12	75	13	8	1	76	1.09
329409--329465	12	5.0	11	75	14	53	15	7	3	73	1.18
330004--330130	60	2.1	58	80	7	148	33	25	7	33	1.85
330249--330437	60	3.1	59	75	8	168	41	4	22	30	1.74
333868--333902	14	2.4	15	90	4	54	45	2	0	51	1.16
333875--333979	5	19.8	5	71	14	52	42	0	1	54	1.18
333876--333977	3	35.0	3	73	9	59	42	0	1	54	1.18
336105--336221	30	3.9	30	94	2	191	20	23	25	30	1.98
336105--336221	61	1.9	59	91	3	189	20	23	25	30	1.98
339402--339442	21	2.0	21	85	0	55	29	29	24	17	1.97
339469--339513	22	2.0	22	86	4	63	31	33	26	8	1.87
340722--340842	30	4.1	30	92	5	185	20	23	24	31	1.98
343098--343144	21	2.1	23	88	7	71	19	10	0	70	1.16
343114--343164	20	2.5	20	80	0	57	29	5	0	64	1.17
343353--343385	11	2.8	12	81	9	50	6	6	12	75	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353909--353954	13	3.6	13	82	11	60	84	10	2	2	0.79
353914--353954	17	2.3	17	87	8	55	85	9	2	2	0.78
353904--353963	13	4.5	13	78	17	54	81	10	6	1	0.93
354000--354033	9	3.8	9	92	7	52	79	2	17	0	0.86
354800--355057	43	5.4	43	63	21	113	35	24	19	20	1.96
354790--355515	98	7.4	98	96	0	1317	34	24	19	21	1.97
357157--357192	2	18.0	2	100	0	72	50	0	0	50	1.00
358945--358996	17	3.2	17	75	10	54	50	13	3	32	1.60
359637--359680	13	3.3	13	80	3	52	31	2	0	65	1.05
360675--360703	2	15.0	2	92	7	51	48	0	0	51	1.00
361436--361566	60	2.2	60	78	8	133	32	22	4	40	1.74
366006--366058	18	2.9	18	97	0	97	28	33	20	16	1.95
368215--368273	18	3.3	18	87	0	91	33	32	18	15	1.92
368222--368281	18	3.3	18	81	9	77	36	33	13	16	1.88
368907--369054	64	2.3	66	79	12	162	27	18	20	33	1.96
370960--371117	65	2.4	64	77	9	149	28	21	18	31	1.97
371221--371253	11	3.1	11	95	4	59	39	27	0	33	1.57
381229--381268	20	2.0	21	95	5	73	32	20	20	27	1.97
386846--386881	16	2.2	16	100	0	72	36	5	13	44	1.68
389472--389698	104	2.2	104	88	5	334	28	14	22	35	1.92
393197--393238	3	14.0	3	94	0	75	30	0	35	33	1.58
393488--393536	21	2.3	22	86	10	66	28	8	2	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393515--393597	38	2.2	38	80	6	105	31	4	12	51	1.59
395800--395838	17	2.4	17	95	4	71	41	23	0	35	1.55
398538--398642	51	2.1	51	94	0	183	36	18	14	31	1.90
400268--400329	29	2.2	29	97	2	117	50	6	9	33	1.61
400269--400341	29	2.5	29	88	4	94	52	4	8	35	1.51
400730--400820	3	30.3	3	100	0	182	67	0	0	32	0.91
402957--402999	2	21.5	2	100	0	86	0	0	48	51	1.00
405841--405964	23	5.4	23	77	1	108	20	20	26	32	1.97
405845--405988	46	3.1	46	81	6	159	20	20	26	32	1.97
405913--405993	23	3.5	23	83	6	94	20	23	25	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39