genome.fa.s7960.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  39  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7671774--7671889	51	2.3	51	84	1	153	20	31	31	15	1.94
7691170--7691226	28	2.0	28	86	6	80	24	14	24	36	1.92
7695760--7695785	3	8.7	3	100	0	52	69	30	0	0	0.89
7702840--7702881	21	2.0	21	95	0	75	30	14	7	47	1.71
7702876--7702973	32	3.0	33	94	2	164	31	7	15	45	1.73
7704145--7704205	26	2.3	26	100	0	122	22	32	24	19	1.97
7706676--7706709	15	2.3	15	89	0	50	47	0	0	52	1.00
7716001--7716030	2	15.0	2	100	0	60	50	0	0	50	1.00
7716339--7716395	23	2.7	21	81	8	71	31	28	21	19	1.97
7719232--7719262	14	2.2	14	100	0	62	45	0	6	48	1.28
7720355--7720405	22	2.3	22	96	3	93	23	37	13	25	1.92
7721216--7721257	21	2.0	21	95	0	75	19	35	23	21	1.96
7729133--7729288	81	1.9	82	84	1	206	33	19	17	29	1.95
7729148--7729444	84	3.6	82	78	7	251	31	19	16	31	1.95
7734058--7734319	43	6.1	42	89	2	335	28	22	22	26	1.99
7734004--7734319	86	3.7	85	85	2	391	27	22	21	28	1.99
7744522--7744571	24	2.1	24	100	0	100	38	16	12	34	1.85
7755467--7755529	19	3.2	19	75	4	54	55	12	0	31	1.37
7755487--7755651	76	2.2	76	86	3	235	55	10	2	30	1.47
7757194--7757221	13	2.2	13	100	0	56	14	21	14	50	1.78
7757219--7757308	28	3.4	27	69	17	80	22	24	14	38	1.91
7757207--7757312	52	2.0	52	94	0	185	20	23	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7757409--7757456	20	2.3	21	86	13	73	83	4	2	10	0.87
7767003--7767056	14	3.8	14	85	4	72	16	1	1	79	0.91
7767267--7767298	16	1.9	17	93	6	57	62	6	21	9	1.47
7767267--7767299	17	1.9	17	93	0	57	63	6	21	9	1.45
7768914--7769078	76	2.2	75	87	3	242	30	2	10	56	1.47
7769720--7769766	17	2.6	18	86	10	69	23	2	2	72	1.06
7771030--7771195	73	2.2	73	85	7	219	56	11	2	29	1.47
7776316--7776389	37	2.0	38	91	2	123	35	16	2	45	1.61
7779848--7779883	18	2.0	18	100	0	72	38	11	22	27	1.88
7781614--7781647	18	1.9	18	88	5	52	47	32	14	5	1.69
7798682--7798734	14	3.8	14	78	7	54	50	1	0	47	1.12
7806884--7806985	52	2.0	51	90	5	161	47	13	4	34	1.65
7806941--7806979	20	2.0	20	90	10	62	41	15	5	38	1.69
7806881--7806996	52	2.2	52	83	4	155	50	13	4	31	1.61
7811611--7811646	3	12.3	3	94	5	65	63	0	0	36	0.94
7811938--7812144	55	3.8	55	79	7	206	28	25	13	33	1.93
7812103--7812310	55	3.8	53	83	6	204	22	25	17	34	1.95
7812121--7812310	54	3.5	54	85	5	249	22	24	17	34	1.96
7813379--7813417	18	2.2	17	90	4	60	2	17	0	79	0.84
7823344--7823379	16	2.2	17	90	5	56	27	27	16	27	1.97
7826706--7826744	3	13.3	3	94	5	71	64	0	0	35	0.94
7827262--7827301	20	2.0	20	90	0	62	42	15	5	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7827254--7827379	52	2.4	52	92	4	200	51	12	4	30	1.60
7827315--7827353	20	2.0	20	84	0	51	51	10	2	35	1.50
7828488--7828551	3	21.0	3	80	3	74	40	1	0	57	1.08
7830097--7830367	146	1.9	146	82	7	345	42	7	4	45	1.53
7839363--7839396	15	2.3	15	89	0	50	38	20	0	41	1.53
7842107--7842154	18	2.6	18	81	15	62	75	2	4	18	1.07
7844536--7844645	53	2.1	51	88	3	157	20	22	14	41	1.89
7844741--7844779	8	4.5	8	82	17	51	87	2	0	10	0.65
7844742--7844787	19	2.3	20	96	3	85	84	4	0	10	0.75
7850349--7850398	3	16.7	3	76	15	50	66	0	2	32	1.03
7850350--7850405	24	2.5	24	85	8	73	66	0	1	32	1.03
7850439--7850478	21	1.9	21	89	0	62	72	2	5	20	1.15
7851060--7851103	19	2.2	21	88	8	65	54	13	0	31	1.39
7851168--7851201	13	2.5	13	85	4	50	73	2	2	20	1.09
7856227--7856259	13	2.5	13	95	0	57	27	12	18	42	1.85
7861303--7861338	7	5.3	7	90	3	56	33	38	0	27	1.57
7867398--7867432	17	2.0	17	88	5	52	42	0	0	57	0.99
7871177--7871234	3	20.0	3	72	13	50	65	3	0	31	1.09
7871178--7871234	17	3.5	17	72	16	57	66	3	0	29	1.08
7871183--7871237	14	4.1	14	75	13	53	67	3	0	29	1.08
7877560--7877754	96	2.0	97	95	3	349	34	14	10	40	1.81
7877825--7877859	13	2.5	14	86	13	54	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7878730--7878802	32	2.5	29	79	16	80	35	26	13	24	1.93
7878904--7878959	23	2.4	23	87	0	85	25	19	19	35	1.95
7880339--7880377	19	2.2	19	86	9	55	33	10	25	30	1.89
7881504--7881544	21	2.0	20	90	4	64	19	0	29	51	1.47
7881695--7881724	14	2.1	14	93	0	51	43	0	6	50	1.28
7882427--7882782	111	3.2	111	91	2	552	33	11	10	44	1.76
7883229--7883698	111	4.2	111	89	0	672	32	11	11	45	1.75
7884091--7884153	23	2.7	23	85	0	81	38	15	11	34	1.83
7884113--7884271	87	1.8	87	90	0	255	34	12	11	41	1.79
7884199--7884243	23	2.0	23	90	0	72	37	17	11	33	1.85
7887049--7887165	56	2.1	56	96	0	216	21	30	26	21	1.98
7891309--7891958	127	5.2	126	88	1	955	22	23	20	34	1.97
7891308--7891958	252	2.6	253	89	2	963	22	23	20	34	1.97
7892367--7892463	32	2.9	33	83	6	124	37	4	6	52	1.46
7892980--7893042	20	3.1	20	90	4	99	23	23	34	17	1.96
7894675--7894725	20	2.6	20	90	3	77	35	15	5	43	1.71
7895427--7895476	18	2.8	19	85	8	61	76	2	20	2	0.99
7898834--7898884	20	2.6	20	90	3	77	35	15	5	43	1.71
7900723--7900792	14	4.8	14	69	13	52	55	0	0	44	0.99
7902954--7903012	29	2.0	29	93	0	100	47	20	0	32	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39

The End!