genome.fa.s7960.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  35  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6706452--6706481	14	2.1	15	93	6	53	50	0	10	40	1.36
6716761--6716865	45	2.3	46	86	6	151	30	9	19	40	1.83
6727857--6728220	51	6.9	52	87	6	387	29	16	25	28	1.97
6727923--6728224	110	2.8	109	84	4	298	30	17	24	27	1.97
6735322--6735380	29	2.0	29	100	0	118	23	13	13	49	1.78
6736538--6736615	31	2.6	30	87	4	120	46	5	7	41	1.55
6737313--6737400	31	2.9	29	80	14	81	56	5	0	37	1.23
6737703--6737812	31	3.6	30	75	10	105	38	9	15	37	1.79
6737886--6737945	32	1.9	31	82	3	75	61	11	5	21	1.49
6739608--6739747	64	2.2	64	83	2	165	27	19	27	25	1.99
6740048--6740871	213	3.9	212	91	4	1271	49	8	12	29	1.69
6740894--6741017	2	59.5	2	77	10	106	47	2	4	45	1.37
6740929--6740996	21	3.4	18	75	16	64	45	2	7	44	1.46
6740929--6740996	19	3.4	19	75	20	68	45	2	7	44	1.46
6740991--6741037	20	2.5	20	86	6	62	44	10	4	40	1.59
6741061--6741137	39	2.0	37	82	9	93	48	6	3	41	1.47
6741131--6741173	22	1.9	22	86	13	61	46	0	4	48	1.22
6741142--6741194	15	3.7	14	76	11	54	49	0	3	47	1.19
6741163--6741208	21	2.2	21	92	0	74	43	0	4	52	1.21
6741249--6741327	20	3.8	20	78	16	88	39	6	1	53	1.35
6741261--6741337	23	3.4	23	79	16	106	36	6	1	55	1.34
6741258--6741350	45	2.1	45	95	0	168	35	6	4	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6741374--6741433	20	3.1	20	69	26	65	38	5	11	45	1.63
6741391--6741464	18	4.0	18	75	19	62	40	8	9	41	1.67
6741374--6741451	38	2.1	38	95	0	138	38	6	11	43	1.67
6741443--6741520	24	3.2	24	77	15	72	41	6	7	44	1.58
6741522--6741582	27	2.2	28	88	2	88	37	8	4	49	1.54
6741670--6741812	33	4.5	33	71	18	97	43	8	7	40	1.64
6741696--6741742	24	2.0	24	91	0	76	46	8	8	36	1.65
6741753--6741856	18	6.1	18	67	20	80	46	6	6	40	1.57
6741753--6741856	51	2.0	51	92	0	172	46	6	6	40	1.57
6741720--6741814	33	2.8	34	83	6	120	42	8	8	41	1.65
6742007--6742093	20	4.3	20	74	12	88	39	5	6	48	1.54
6742022--6742120	20	4.8	20	78	12	85	37	5	9	48	1.57
6742141--6742183	16	2.6	17	82	14	54	48	6	2	41	1.43
6742110--6742270	64	2.5	63	80	14	163	45	6	2	45	1.41
6742166--6742228	20	3.0	20	71	13	56	47	7	1	42	1.42
6742104--6742284	31	5.8	30	71	23	117	44	5	2	46	1.41
6742263--6742357	6	15.3	6	76	11	61	48	2	1	48	1.20
6743041--6743133	28	3.4	28	96	1	170	9	32	3	54	1.49
6745391--6745428	13	2.8	13	82	17	51	60	0	2	36	1.11
6745407--6745524	19	6.5	19	68	22	76	60	1	3	34	1.24
6745457--6745495	14	2.7	14	88	11	53	56	5	2	35	1.35
6745392--6745526	71	1.9	70	89	7	211	60	1	2	35	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6746352--6746391	5	8.2	5	83	5	55	22	2	0	75	0.93
6746617--6746657	17	2.4	17	83	0	55	82	4	0	12	0.81
6747474--6747530	21	2.7	21	77	0	60	29	22	19	28	1.98
6752565--6752612	20	2.5	20	86	10	64	47	6	14	31	1.69
6756351--6756387	19	1.9	19	94	0	65	32	29	16	21	1.95
6756432--6756642	41	5.1	41	97	0	386	35	26	16	21	1.95
6756594--6756743	52	3.0	50	90	4	248	36	22	16	25	1.94
6757178--6757282	19	5.2	19	77	13	93	32	26	3	37	1.75
6760971--6761171	27	7.4	27	87	0	222	15	28	26	29	1.96
6768778--6768839	29	2.2	27	91	5	97	46	1	1	50	1.20
6768778--6768842	14	4.7	13	80	14	76	46	1	1	50	1.20
6769035--6769084	18	2.8	18	78	3	66	62	0	0	38	0.96
6771882--6772039	21	7.8	20	72	7	86	39	24	17	18	1.92
6772006--6772255	20	12.5	20	83	5	263	36	24	18	20	1.95
6772934--6772980	24	2.0	24	87	8	69	25	14	21	38	1.92
6773154--6773178	12	2.1	12	100	0	50	72	0	28	0	0.86
6775460--6775690	33	6.7	34	81	14	237	46	18	22	13	1.83
6775474--6775690	19	12.4	19	77	19	249	46	17	21	13	1.83
6775560--6775712	33	4.5	33	74	16	159	45	17	22	13	1.84
6775502--6775712	52	4.0	52	99	0	413	45	17	23	13	1.83
6775719--6775834	53	2.2	53	98	1	225	13	24	18	43	1.86
6775737--6775834	19	5.4	19	84	13	143	14	22	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6775941--6775977	14	2.6	14	91	0	65	45	21	0	32	1.52
6777899--6778028	19	7.3	19	75	17	127	46	28	16	8	1.77
6777935--6778028	33	2.9	32	92	4	152	46	27	18	7	1.75
6777899--6778028	52	2.5	52	75	14	142	46	28	16	8	1.77
6778116--6778491	93	4.1	93	98	0	718	46	19	12	22	1.83
6780198--6780287	14	5.7	14	72	23	72	43	23	24	8	1.82
6780190--6780304	33	3.5	33	97	0	221	46	20	23	9	1.80
6780212--6780309	19	5.7	19	71	22	90	43	22	23	10	1.83
6780305--6780423	21	6.3	19	77	13	95	11	22	20	45	1.83
6780347--6780424	41	1.9	41	97	0	147	14	25	15	44	1.84
6780348--6780423	21	3.7	21	83	3	109	13	25	15	46	1.82
6780503--6780573	33	2.2	33	92	0	115	47	18	22	11	1.80
6780956--6781149	20	9.6	20	82	5	221	19	19	25	35	1.95
6780956--6781149	60	3.2	60	83	0	253	19	19	25	35	1.95
6781445--6781482	18	2.1	19	85	5	51	44	2	2	50	1.30
6781883--6781914	16	2.0	16	100	0	64	25	25	6	43	1.77
6804724--6804756	16	2.1	16	100	0	66	30	18	18	33	1.94
6815578--6815672	33	2.9	33	100	0	190	21	14	25	38	1.91
6825691--6825723	2	16.5	2	100	0	66	48	0	0	51	1.00
6832607--6832768	80	2.0	83	91	8	271	39	16	13	30	1.87
6838850--6838902	24	2.2	24	87	9	74	24	3	3	67	1.23
6841875--6842031	31	5.0	31	88	3	217	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6841875--6842020	63	2.3	62	90	3	222	21	19	21	36	1.95
6846121--6846276	31	5.0	31	91	1	242	20	20	22	36	1.95
6850019--6850100	39	2.1	39	88	0	119	28	29	23	19	1.98
6857557--6857594	14	2.7	14	95	0	67	28	28	15	26	1.96
6857768--6857883	44	2.6	44	81	10	121	34	22	16	26	1.95
6857683--6858010	170	1.9	170	89	0	512	33	23	16	26	1.95
6858259--6858509	83	3.0	84	85	4	330	32	21	18	26	1.97
6858798--6858846	20	2.5	20	96	0	89	10	44	12	32	1.75
6859080--6859132	24	2.2	24	87	9	74	24	3	3	67	1.23
6875111--6875240	64	2.0	64	93	0	224	39	11	20	29	1.87
6883051--6883093	20	2.2	20	83	8	52	23	25	4	46	1.71
6883229--6883292	30	2.1	30	85	5	85	32	14	9	43	1.77
6883707--6884061	176	2.0	176	100	0	710	32	19	16	30	1.94
6885601--6885661	22	2.8	23	82	7	65	47	0	0	52	1.00
6885612--6885690	31	2.5	32	80	16	92	48	1	0	50	1.08
6885714--6885777	28	2.2	28	86	8	85	43	1	1	53	1.19
6885945--6886014	20	3.5	20	94	0	122	37	12	10	40	1.77
6885945--6886023	40	2.0	40	87	0	113	36	13	8	40	1.76
6886007--6886078	15	4.9	15	91	1	119	36	20	6	36	1.80
6885997--6886078	30	2.8	30	92	1	130	36	18	7	37	1.79
6886160--6886217	19	2.8	21	73	21	59	55	6	0	37	1.27
6891831--6892106	139	2.0	139	97	0	516	30	15	14	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6905394--6905445	25	2.0	26	82	10	63	11	19	1	67	1.31
6913343--6913415	37	2.0	36	84	5	94	49	5	0	45	1.25
6914317--6914368	22	2.4	22	86	0	77	21	19	25	34	1.96
6914609--6914728	64	1.9	64	96	0	222	42	13	12	31	1.81
6914753--6915271	200	2.6	197	85	4	688	31	15	14	39	1.87
6915689--6915738	19	2.6	19	90	0	82	54	8	4	34	1.49
6917281--6917318	18	2.1	18	95	0	67	7	34	0	57	1.28
6920060--6920781	182	4.0	182	91	1	1108	27	17	13	42	1.86
6920604--6921168	163	3.3	164	77	12	559	27	15	12	44	1.82
6920427--6921166	346	2.1	346	90	2	1148	27	15	12	44	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39