genome.fa.s7960.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  36  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6920768--6921127	183	2.0	183	92	1	596	27	15	12	43	1.83
6924641--6924721	33	2.5	33	82	4	85	33	3	6	56	1.42
6924706--6924730	2	12.5	2	100	0	50	48	0	0	52	1.00
6924833--6924867	16	2.1	18	89	10	56	25	8	0	65	1.21
6926879--6926925	20	2.3	20	100	0	94	19	23	4	53	1.63
6928077--6928138	23	2.7	22	80	9	72	79	6	14	0	0.93
6928077--6928146	20	3.3	20	82	9	68	78	5	14	1	1.00
6928754--6928830	22	3.5	22	94	0	136	37	27	14	20	1.91
6929657--6930576	105	8.9	104	89	4	1353	33	26	18	22	1.97
6929657--6930576	205	4.5	205	92	1	1459	33	26	18	22	1.97
6929657--6930576	409	2.2	414	91	2	1485	33	26	18	22	1.97
6931622--6931668	2	23.5	2	100	0	94	48	0	0	51	1.00
6931725--6931762	20	1.9	20	88	0	58	26	7	2	63	1.35
6931773--6931807	16	2.1	18	89	10	56	25	8	0	65	1.21
6932654--6932728	30	2.5	30	82	2	87	46	6	6	40	1.56
6935824--6935896	3	23.7	3	72	15	51	69	1	0	28	0.96
6935817--6935897	21	3.7	22	79	14	78	70	1	1	27	1.02
6935824--6935880	20	2.8	20	84	10	71	73	1	0	24	0.92
6935832--6935902	25	2.6	28	76	13	76	70	1	0	28	0.96
6935905--6936191	37	7.8	36	80	13	291	42	7	3	46	1.50
6935910--6936185	73	3.7	73	83	12	334	43	7	3	44	1.51
6936410--6936454	23	2.0	23	86	8	65	40	0	11	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6937196--6937233	20	1.9	20	94	0	67	36	2	31	28	1.71
6937387--6937417	15	2.0	16	93	6	55	0	22	12	64	1.27
6940207--6940348	63	2.2	63	88	1	203	34	22	19	23	1.97
6940892--6940951	18	3.2	18	81	9	84	20	20	31	28	1.97
6940892--6940964	18	3.9	18	74	13	67	21	20	28	28	1.98
6943312--6943349	7	5.4	7	100	0	76	26	28	28	15	1.96
6943346--6943403	5	10.8	5	78	14	62	6	22	51	18	1.70
6943339--6943403	22	3.0	22	100	0	130	9	23	49	18	1.76
6943400--6943497	9	10.3	9	77	12	81	29	26	28	15	1.96
6943400--6943477	19	4.2	18	75	19	79	28	28	29	14	1.95
6943426--6943498	29	2.5	31	88	8	116	28	26	27	17	1.98
6950661--6950698	7	5.4	7	100	0	76	26	28	28	15	1.96
6950695--6950752	5	10.8	5	78	14	62	6	22	51	18	1.70
6950688--6950752	22	3.0	22	100	0	130	9	23	49	18	1.76
6950749--6950827	19	4.2	18	78	16	88	27	29	29	13	1.95
6950750--6950827	29	2.7	27	79	13	77	28	29	28	14	1.95
6953712--6953749	20	1.9	20	88	0	58	39	2	28	28	1.70
6971165--6971225	23	2.7	23	92	0	104	24	27	27	19	1.99
6978811--6978847	15	2.5	15	90	0	56	29	32	0	37	1.58
6981528--6981572	23	2.0	23	86	0	63	31	22	26	20	1.98
6991566--6991617	21	2.5	21	80	0	59	48	9	9	32	1.69
6991593--6991652	21	2.9	20	73	7	57	45	8	11	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7007042--7007082	2	20.5	2	100	0	82	48	0	0	51	1.00
7008286--7008383	35	2.9	34	82	8	103	17	5	4	73	1.17
7008326--7008376	27	1.9	27	88	4	77	15	3	3	76	1.08
7008335--7008410	38	2.0	40	87	10	113	14	6	2	76	1.10
7008333--7008385	11	4.7	11	79	4	61	13	3	1	81	0.92
7008335--7008393	19	3.1	18	71	9	55	10	8	1	79	1.00
7008290--7008445	35	4.3	37	74	17	96	18	6	4	70	1.26
7008980--7009017	20	1.9	20	94	0	67	26	28	21	23	1.99
7009036--7009159	64	1.9	65	93	4	216	29	21	17	30	1.96
7009392--7009426	11	3.1	11	87	4	52	62	8	20	8	1.49
7016133--7016187	27	2.0	27	82	6	67	14	40	14	30	1.86
7018926--7019047	19	6.1	20	81	10	142	17	27	37	17	1.92
7021358--7021428	34	2.1	33	86	2	97	21	29	15	33	1.94
7021771--7021853	20	4.0	21	87	6	107	19	27	34	18	1.95
7021770--7021853	42	2.0	42	88	0	123	19	28	34	17	1.95
7024139--7024308	92	1.9	91	90	3	270	32	18	17	31	1.94
7025780--7025883	21	5.5	21	63	25	70	24	20	13	42	1.87
7025711--7025939	36	6.4	35	88	4	325	26	20	13	39	1.90
7025765--7026038	108	2.7	99	83	8	275	26	19	14	40	1.89
7025954--7026071	35	3.4	35	82	8	143	22	19	15	42	1.89
7025821--7026139	136	2.4	135	85	5	448	26	19	14	39	1.90
7026123--7026264	33	4.4	31	85	10	180	38	18	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7026123--7026264	63	2.2	63	85	10	198	38	18	9	33	1.84
7026123--7026263	35	4.4	34	85	11	183	38	18	9	33	1.84
7027910--7028069	5	32.4	5	66	19	52	17	6	1	73	1.14
7027908--7027979	16	4.4	17	73	19	57	13	8	1	76	1.08
7027953--7028071	14	8.5	13	68	18	69	19	5	1	73	1.10
7027912--7027994	38	2.2	38	78	10	89	14	8	1	75	1.08
7027957--7028072	45	2.7	41	81	12	130	19	6	1	72	1.15
7028002--7028068	20	3.4	19	75	15	64	20	2	1	74	1.03
7029310--7029434	50	2.5	49	85	1	169	17	36	27	19	1.94
7029639--7029679	18	2.3	18	91	4	66	29	4	2	63	1.28
7029740--7030012	108	2.6	106	88	6	393	36	8	9	44	1.68
7031828--7031877	9	5.6	9	82	0	55	32	22	38	8	1.83
7038637--7038685	25	2.0	25	84	8	64	61	2	8	28	1.36
7039735--7039763	2	14.5	2	100	0	58	48	0	0	51	1.00
7041198--7041224	2	13.5	2	100	0	54	48	0	0	51	1.00
7041233--7041339	4	25.8	4	72	17	58	20	2	1	74	1.03
7041233--7041339	13	8.6	12	68	19	58	20	2	1	74	1.03
7041290--7041388	30	3.2	30	76	19	80	16	8	1	74	1.10
7044479--7044520	12	3.3	12	87	12	66	80	0	16	2	0.81
7044474--7044526	14	4.5	11	82	15	54	77	1	18	1	0.96
7044506--7044543	18	2.2	18	85	4	51	73	0	21	5	1.02
7044602--7044736	69	2.0	69	89	2	209	38	22	13	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7046191--7046265	37	2.0	38	86	2	107	29	21	14	34	1.93
7046263--7046357	37	2.6	37	85	3	122	28	21	12	37	1.90
7046185--7046456	101	2.7	102	92	1	440	29	20	12	36	1.90
7046373--7046462	36	2.5	36	94	0	162	26	21	12	40	1.88
7046191--7046541	101	3.5	102	87	2	431	29	19	12	38	1.89
7046414--7046637	123	1.8	123	87	0	331	28	19	12	40	1.87
7046541--7046714	65	2.6	65	86	5	233	32	21	9	36	1.85
7046541--7046713	67	2.6	67	88	3	226	32	21	9	36	1.86
7047423--7047689	110	2.5	107	80	8	317	34	23	18	23	1.96
7048927--7048986	27	2.2	28	82	5	70	26	1	3	68	1.15
7049006--7049056	2	26.5	2	90	7	79	45	0	0	54	0.99
7048998--7049052	26	2.1	26	96	0	101	43	0	0	56	0.99
7049050--7049105	27	2.0	28	82	3	69	19	5	1	73	1.12
7049071--7049117	10	4.9	10	84	10	62	12	6	0	80	0.88
7049048--7049121	28	2.6	27	78	6	67	18	5	1	74	1.08
7049063--7049117	18	2.9	19	81	13	60	12	5	1	80	0.97
7049063--7049130	24	2.9	22	75	16	66	14	4	1	79	0.96
7049155--7049221	27	2.4	27	75	5	62	19	5	1	73	1.12
7050652--7050702	21	2.5	21	90	3	77	45	0	0	54	0.99
7050646--7050694	21	2.4	20	86	6	71	40	0	0	59	0.98
7053612--7053647	13	2.8	13	95	0	63	22	13	27	36	1.92
7057286--7057328	21	1.9	24	86	13	65	44	9	9	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7062579--7062605	13	2.1	13	100	0	54	22	25	14	37	1.93
7069284--7069314	15	2.1	15	93	0	53	45	0	0	54	0.99
7073757--7074071	105	3.0	105	93	0	549	22	25	25	27	2.00
7074462--7074544	9	9.1	9	69	20	57	0	32	3	63	1.11
7077259--7077291	16	2.1	16	100	0	66	57	24	12	6	1.57
7077346--7077388	16	2.7	16	92	0	77	58	20	11	9	1.61
7078136--7078167	15	2.2	14	94	5	55	56	21	12	9	1.64
7078160--7078192	14	2.4	14	94	0	57	54	27	12	6	1.60
7078129--7078191	24	2.6	24	89	2	90	55	23	11	9	1.64
7079537--7079583	24	2.0	24	91	0	76	31	21	23	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39