genome.fa.s7960.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  24  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4683128--4683193	10	6.1	11	80	18	68	65	0	0	34	0.93
4683123--4683207	10	8.9	10	69	23	51	64	1	0	34	1.01
4683127--4683207	35	2.3	35	83	8	103	65	1	0	33	1.01
4683206--4683517	36	8.3	39	77	10	176	42	7	6	44	1.57
4683243--4683517	36	7.5	36	77	9	218	42	7	6	44	1.57
4683242--4683517	74	3.8	73	77	11	269	42	7	6	43	1.57
4683654--4683712	31	1.9	30	86	10	84	50	3	10	35	1.53
4684129--4684185	5	11.4	5	94	5	98	42	0	0	57	0.98
4684131--4684186	8	6.4	10	72	27	56	42	0	0	57	0.99
4687658--4687711	23	2.3	23	93	0	99	48	20	12	18	1.81
4689171--4689195	2	12.5	2	100	0	50	52	0	0	48	1.00
4689353--4689400	24	2.0	24	87	0	69	52	16	12	18	1.75
4689360--4689423	24	2.7	24	85	4	76	46	15	14	23	1.82
4692820--4692875	23	2.6	23	81	13	66	25	17	16	41	1.89
4697438--4697657	64	3.5	63	83	4	239	33	20	19	27	1.96
4697965--4698012	12	4.0	12	94	0	87	33	6	25	35	1.81
4698157--4698189	15	2.2	15	100	0	66	15	18	33	33	1.92
4703677--4703896	64	3.5	64	80	4	214	33	19	19	28	1.96
4704209--4704244	12	3.0	12	91	0	63	33	5	25	36	1.79
4704209--4704277	24	2.8	26	83	12	85	37	5	24	31	1.79
4704389--4704421	15	2.2	15	100	0	66	15	18	33	33	1.92
4707090--4707134	21	2.0	24	83	12	60	53	13	6	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707602--4707641	21	1.9	21	94	0	71	37	30	10	22	1.87
4710132--4710204	2	36.5	2	100	0	146	50	0	0	49	1.00
4713733--4713786	18	2.9	19	83	5	74	51	11	18	18	1.74
4713863--4713898	15	2.4	15	90	0	54	41	19	13	25	1.88
4713871--4713907	15	2.5	15	100	0	74	43	10	21	24	1.84
4717818--4717869	19	2.8	18	82	8	52	51	7	21	19	1.71
4717828--4717869	19	2.2	19	86	4	57	50	7	21	21	1.72
4720247--4720322	2	39.0	2	94	5	138	51	0	0	48	1.00
4721277--4721354	31	2.6	30	82	8	95	42	0	5	52	1.23
4726026--4726131	42	2.6	41	79	5	115	29	21	23	25	1.99
4725900--4727329	205	6.6	206	80	10	1447	30	19	16	32	1.94
4726440--4726536	42	2.3	41	83	1	122	29	20	24	24	1.99
4726651--4726769	42	2.9	42	86	3	152	33	23	19	23	1.97
4726445--4726974	248	2.1	248	93	0	911	30	20	17	30	1.96
4726893--4726989	42	2.3	41	83	1	122	28	21	24	24	1.99
4727109--4727209	42	2.4	42	81	4	125	29	23	23	22	1.99
4726692--4727329	216	3.0	214	89	4	954	31	19	16	32	1.94
4727332--4727472	36	4.0	35	73	9	101	22	20	20	36	1.95
4733725--4733837	21	5.4	20	84	7	120	15	23	19	41	1.90
4733722--4733837	42	2.8	41	80	8	137	16	22	20	40	1.91
4741259--4741297	6	6.7	6	94	5	71	33	48	17	0	1.48
4741796--4741835	11	3.6	11	93	6	64	0	20	52	27	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4741796--4741835	5	7.4	5	91	8	53	0	20	52	27	1.46
4741846--4742008	21	7.9	21	72	13	113	25	23	19	31	1.98
4741846--4741996	62	2.4	62	89	4	250	24	23	19	32	1.98
4749430--4749461	14	2.3	14	94	0	55	28	3	25	43	1.69
4750210--4750276	34	1.9	34	91	8	109	46	2	2	47	1.33
4768917--4768950	5	6.8	5	86	0	50	5	41	35	17	1.74
4770577--4770638	31	2.0	31	96	0	115	32	37	4	25	1.77
4772806--4772865	21	2.8	22	82	9	63	43	13	1	41	1.54
4774072--4774126	20	2.8	20	78	10	58	45	14	12	27	1.81
4777162--4777208	24	2.0	23	83	4	58	42	8	4	44	1.54
4782074--4782182	23	4.7	23	82	4	139	29	23	27	19	1.98
4782074--4782182	46	2.4	46	85	0	155	29	23	27	19	1.98
4787258--4787344	23	3.8	23	84	0	111	31	25	25	18	1.98
4789597--4789660	2	32.0	2	100	0	128	50	0	0	50	1.00
4792106--4792145	21	1.9	21	94	0	71	27	20	25	27	1.99
4792819--4792899	2	40.5	2	97	0	153	50	0	0	49	1.00
4793023--4793057	18	1.9	18	88	0	52	25	34	20	20	1.96
4793039--4793080	22	1.9	22	95	0	75	28	28	21	21	1.99
4796779--4796808	14	2.2	13	94	5	51	0	30	0	70	0.88
4799789--4799881	18	4.9	18	75	10	87	27	32	18	21	1.97
4806137--4806775	200	3.2	200	81	4	683	39	13	11	35	1.81
4806584--4806907	179	1.8	179	86	0	468	38	11	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4806763--4807274	199	2.6	200	83	3	638	39	13	14	33	1.84
4807178--4807490	130	2.4	128	82	5	346	40	12	15	30	1.84
4807518--4807915	118	3.5	116	71	11	325	31	14	12	40	1.84
4807488--4808097	226	2.7	226	87	0	851	33	14	12	40	1.83
4809683--4809740	21	2.8	20	77	17	57	43	0	1	55	1.10
4810451--4810491	3	13.7	3	89	0	64	36	2	0	60	1.10
4818933--4819213	131	2.1	131	84	3	377	34	11	13	40	1.80
4818933--4819279	131	2.6	131	82	3	367	34	9	15	40	1.80
4830272--4830303	12	2.6	13	85	14	50	75	0	18	6	1.01
4830260--4830340	9	9.6	8	74	12	56	75	1	19	3	1.02
4830261--4830346	26	3.3	25	77	12	75	75	1	17	5	1.06
4830970--4831030	23	2.7	23	94	0	104	29	11	34	24	1.91
4831660--4832203	135	4.1	135	80	5	460	30	21	17	30	1.96
4832498--4832544	3	15.7	3	78	8	51	36	2	0	61	1.08
4832501--4832541	20	2.0	20	86	9	57	36	2	0	60	1.10
4832495--4832545	23	2.2	24	85	3	68	35	1	0	62	1.06
4833519--4833735	107	2.1	104	84	6	276	20	16	17	45	1.86
4833519--4833765	107	2.3	107	81	6	274	21	15	17	45	1.85
4834606--4834925	124	2.5	125	83	6	376	34	8	18	39	1.81
4835366--4835412	20	2.4	19	82	13	51	42	0	4	53	1.20
4850022--4850055	17	2.0	17	94	0	59	47	8	23	20	1.78
4850374--4850405	16	1.9	17	93	6	57	31	28	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4850674--4850717	9	4.8	9	83	5	52	40	0	0	59	0.98
4850671--4850706	3	12.0	3	93	0	63	36	0	0	63	0.94
4850753--4850812	24	2.5	24	81	10	77	46	36	10	6	1.64
4853298--4853422	63	1.9	65	82	7	157	21	19	18	40	1.91
4855980--4856039	31	1.9	31	93	0	102	21	5	31	41	1.75
4857306--4857330	3	8.3	3	100	0	50	68	0	0	32	0.90
4857896--4857934	15	2.6	14	88	12	51	23	2	0	74	0.94
4859994--4860042	25	2.0	25	84	4	64	65	2	0	32	1.04
4859985--4860042	25	2.3	24	79	5	62	63	1	1	32	1.14
4861692--4861851	55	2.9	55	87	0	248	30	16	19	33	1.94
4862435--4862493	21	2.7	23	81	10	77	27	25	25	22	2.00
4862716--4862774	31	1.9	31	86	10	86	33	25	3	37	1.73
4863779--4863815	3	12.0	3	88	5	56	67	0	29	2	1.04
4864055--4864284	55	4.2	55	86	0	316	28	17	20	33	1.96
4864627--4864673	19	2.5	19	82	3	51	21	19	21	38	1.94
4866850--4866876	2	13.5	2	100	0	54	48	0	0	51	1.00
4868691--4868778	27	3.2	27	68	25	85	28	13	20	37	1.91
4868584--4869015	55	7.9	55	89	0	630	29	18	19	32	1.95
4870033--4870078	18	2.6	18	92	0	74	34	8	36	19	1.83
4870520--4870709	98	1.9	97	89	3	292	48	6	8	36	1.60
4872656--4872719	31	2.1	31	90	0	101	56	7	10	25	1.60
4872717--4872744	14	2.0	14	100	0	56	28	0	7	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4872913--4873106	60	3.2	60	81	5	180	32	21	5	40	1.76
4873782--4873827	22	2.0	23	83	4	58	43	6	0	50	1.28
4875633--4875678	19	2.5	19	85	3	58	32	8	0	58	1.28
4875658--4875694	13	2.7	14	84	15	51	37	2	0	59	1.12
4876272--4876322	23	2.2	23	85	0	66	37	25	13	23	1.92
4876418--4876455	20	1.9	20	94	0	67	55	13	15	15	1.70
4876277--4876635	180	2.0	180	97	0	673	40	21	15	22	1.91
4876598--4876635	20	1.9	20	88	0	58	55	15	15	13	1.70
4876822--4876870	21	2.3	21	79	6	55	61	2	2	34	1.19
4881879--4882007	19	6.6	19	87	5	170	35	22	10	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39