genome.fa.s7960.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  32  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6102149--6102211	23	2.7	23	90	0	90	20	28	25	25	1.99
6105919--6106011	34	2.7	34	75	6	89	64	9	4	21	1.41
6106196--6106234	9	4.3	9	90	0	60	12	33	20	33	1.91
6108291--6108337	16	3.0	16	81	3	51	65	0	0	34	0.93
6110654--6110692	18	2.2	17	95	4	69	17	15	33	33	1.92
6110957--6111056	45	2.2	46	77	8	105	38	5	20	37	1.74
6111416--6111463	22	2.2	22	92	3	80	27	22	31	18	1.97
6122049--6122107	10	5.7	10	74	7	55	69	5	3	22	1.23
6123343--6123394	10	5.0	11	78	19	58	25	0	3	71	1.03
6123360--6123394	10	3.4	10	92	7	61	20	0	0	80	0.72
6123360--6123396	11	3.5	11	82	17	51	21	0	0	78	0.75
6124192--6124243	21	2.5	20	87	9	77	73	0	0	26	0.84
6124192--6124240	22	2.3	21	86	10	64	75	0	0	24	0.80
6128343--6128383	18	2.3	18	87	4	57	60	2	7	29	1.36
6128423--6128454	10	2.8	12	81	18	50	43	0	28	28	1.55
6128483--6128537	23	2.4	23	93	3	94	21	0	41	36	1.54
6138319--6138780	41	11.3	41	79	5	436	26	17	20	35	1.95
6138320--6138780	125	3.7	125	76	11	398	26	18	20	35	1.95
6138319--6138782	166	2.8	164	79	7	471	26	17	20	35	1.95
6141193--6141304	41	2.7	40	84	6	134	25	23	18	32	1.97
6149895--6149935	21	2.0	21	90	0	64	21	26	21	29	1.99
6149979--6150049	20	3.8	20	74	24	73	25	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6149998--6150048	16	2.9	17	78	21	52	25	19	29	25	1.99
6149979--6150148	36	4.9	36	70	13	142	27	17	27	28	1.97
6150081--6150149	20	3.7	18	71	25	54	27	17	26	28	1.97
6150549--6150731	29	6.2	28	75	11	143	57	9	17	15	1.64
6150564--6150733	88	1.9	89	83	3	218	58	8	15	17	1.62
6150622--6150739	60	2.0	59	88	8	177	60	6	16	16	1.56
6151240--6151449	65	3.2	65	82	6	223	30	24	18	26	1.98
6159283--6159483	65	3.1	65	80	9	189	31	22	17	27	1.97
6166197--6166236	20	2.0	20	100	0	80	15	10	40	35	1.80
6167524--6167567	22	2.0	22	100	0	88	22	31	22	22	1.98
6167529--6167575	22	2.2	22	88	3	69	27	27	25	19	1.99
6167645--6167674	14	2.1	14	93	0	51	50	6	0	43	1.28
6169207--6169305	21	4.7	21	73	12	94	40	31	1	27	1.63
6169208--6169276	35	2.0	35	86	11	97	43	27	0	28	1.55
6169255--6169299	22	2.0	22	86	0	63	40	37	2	20	1.65
6169204--6169300	7	13.7	7	78	2	68	40	32	1	25	1.63
6171593--6171653	33	1.9	31	87	9	88	26	13	18	42	1.86
6171606--6171681	33	2.3	33	84	4	91	25	11	17	46	1.82
6171746--6171790	19	2.4	19	96	0	81	28	4	17	48	1.66
6172225--6172363	55	2.5	55	92	0	224	29	25	23	21	1.99
6173146--6173188	17	2.5	17	88	0	59	23	18	30	27	1.98
6173161--6173209	24	2.1	23	92	3	80	20	26	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6174618--6174666	22	2.1	22	85	7	62	51	0	0	48	1.00
6174679--6174706	13	2.2	13	100	0	56	57	0	0	42	0.99
6177871--6177938	20	3.2	20	64	28	50	17	29	14	38	1.90
6177858--6177944	44	2.0	44	97	0	165	17	25	19	37	1.93
6178019--6178106	44	2.0	44	88	0	131	20	22	19	37	1.94
6177816--6178219	161	2.5	160	93	2	666	21	24	21	33	1.97
6178265--6178410	60	2.4	60	80	2	150	26	32	23	16	1.96
6191397--6191589	97	2.0	97	95	0	350	33	18	16	32	1.93
6192018--6192043	11	2.4	11	100	0	52	15	46	7	30	1.74
6194079--6194125	11	4.4	11	83	5	69	61	19	2	17	1.44
6194071--6194125	21	2.6	22	82	5	69	61	20	1	16	1.43
6194318--6194350	14	2.3	15	89	5	50	45	0	0	54	0.99
6195558--6195601	21	2.0	21	83	12	54	68	4	18	9	1.34
6210891--6210954	22	2.9	22	79	6	76	34	26	20	18	1.96
6214414--6214452	20	2.0	20	94	0	69	17	23	23	35	1.95
6218508--6218565	20	2.7	20	86	10	71	22	22	22	32	1.98
6220500--6220531	12	2.7	12	100	0	64	15	0	50	34	1.45
6220527--6220554	12	2.3	12	100	0	56	7	0	39	53	1.28
6228006--6228038	17	1.9	17	100	0	66	51	12	6	30	1.63
6229969--6230041	21	3.5	21	86	0	92	19	23	35	21	1.96
6234731--6234764	4	8.8	4	93	6	61	0	23	0	76	0.79
6236170--6236208	20	1.9	21	85	15	55	30	15	43	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6248562--6248599	19	2.0	19	100	0	76	26	26	21	26	1.99
6255129--6256124	496	2.0	498	96	3	1828	30	24	4	40	1.75
6257204--6257270	23	2.9	23	79	0	80	34	25	22	17	1.96
6257919--6258069	2	77.5	2	92	5	256	48	0	0	50	1.10
6264146--6264199	20	2.7	20	77	11	74	27	29	14	27	1.95
6264275--6264314	20	2.0	20	85	9	55	42	25	17	15	1.88
6264704--6264734	13	2.4	13	94	0	53	3	6	16	74	1.16
6264763--6264805	19	2.2	20	88	12	63	46	25	16	11	1.80
6264802--6264843	20	2.1	20	86	0	57	14	19	21	45	1.85
6266691--6266790	21	4.8	21	71	9	69	25	34	17	24	1.96
6268204--6268243	14	2.9	14	80	0	53	30	0	17	52	1.45
6268153--6268294	67	2.2	67	82	9	172	31	1	16	50	1.55
6268592--6268676	39	2.4	33	74	22	89	16	15	18	49	1.80
6268601--6268677	39	2.0	40	94	2	138	14	16	18	50	1.78
6268982--6269018	18	2.1	18	89	0	56	51	10	5	32	1.60
6269405--6269454	25	2.0	25	92	0	82	44	20	10	26	1.82
6269520--6269606	40	2.3	39	86	11	121	37	21	19	20	1.94
6269545--6269606	20	3.1	20	78	0	79	35	22	20	20	1.96
6269610--6269656	20	2.3	20	82	7	60	19	19	19	42	1.89
6269602--6269747	54	2.7	54	89	4	224	19	19	20	40	1.92
6272325--6272371	24	2.0	24	95	0	85	34	17	19	29	1.94
6272329--6272380	24	2.2	24	85	0	68	36	19	17	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6273231--6273378	20	7.6	20	84	6	144	24	14	23	37	1.93
6273245--6273378	40	3.4	40	86	5	175	22	15	24	37	1.93
6273372--6273436	21	3.1	21	88	0	94	40	15	21	23	1.91
6284315--6284428	55	2.1	55	100	0	228	44	7	15	32	1.74
6285134--6285207	20	3.7	20	87	0	103	28	24	18	28	1.98
6285050--6285220	40	4.2	39	72	10	128	28	22	16	31	1.96
6286015--6286074	24	2.5	24	83	0	84	25	18	18	38	1.93
6288429--6288694	140	1.9	140	99	0	523	28	13	15	42	1.85
6288677--6288772	34	2.8	34	95	0	165	39	25	12	22	1.89
6288745--6289005	20	14.0	20	73	15	220	34	22	18	23	1.96
6288711--6288848	54	2.6	54	89	0	213	36	26	15	21	1.93
6288819--6289001	74	2.5	74	94	1	314	33	21	19	24	1.97
6288711--6289005	54	5.4	54	71	12	199	35	23	17	23	1.95
6289000--6289057	20	2.9	20	81	0	62	12	15	25	46	1.80
6289156--6289217	14	4.3	14	77	6	61	46	14	0	38	1.45
6290609--6290720	42	2.7	42	76	8	113	23	18	37	20	1.94
6291217--6291272	20	2.8	20	97	0	103	39	23	19	17	1.92
6291489--6291539	18	2.8	18	100	0	102	41	5	19	33	1.76
6293254--6293309	20	2.8	20	80	0	67	53	23	12	10	1.69
6293697--6293759	21	3.0	21	81	4	65	20	17	41	20	1.91
6293927--6293979	20	2.7	20	90	0	88	28	20	26	24	1.99
6297778--6297856	34	2.4	33	83	8	90	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6297768--6297879	34	3.6	31	75	12	88	40	0	0	58	1.04
6299662--6299734	21	3.5	21	88	7	112	17	32	26	23	1.97
6300247--6300353	34	3.1	34	86	0	151	54	4	2	38	1.36
6305398--6305487	49	1.9	46	84	10	121	37	11	10	41	1.74
6311476--6311523	22	2.2	22	92	0	78	31	2	31	35	1.70
6313643--6313705	19	3.2	19	75	4	54	31	0	12	55	1.37
6314305--6314341	17	2.2	17	95	0	65	24	2	0	72	0.97
6314406--6314444	17	2.3	17	86	8	53	20	5	0	74	1.01
6314753--6314829	33	2.3	33	88	0	109	22	18	27	32	1.97
6318558--6318845	157	1.8	157	100	0	576	25	29	11	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39