genome.fa.s7960.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  37  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079758--7079824	15	4.5	15	76	0	71	40	20	7	31	1.80
7080816--7080861	18	2.5	19	89	3	67	58	28	4	8	1.47
7099282--7099332	19	2.7	19	87	0	75	17	21	35	25	1.95
7099980--7100016	16	2.2	17	90	4	58	35	21	5	37	1.77
7100495--7100532	20	1.9	20	100	0	76	36	10	23	28	1.88
7104617--7104641	12	2.1	12	100	0	50	40	20	0	40	1.52
7105863--7105913	23	2.2	23	85	3	66	43	5	9	41	1.62
7109222--7109249	2	14.0	2	100	0	56	50	0	0	50	1.00
7116021--7116046	13	2.0	13	100	0	52	23	23	15	38	1.92
7116931--7116978	22	2.2	22	96	0	87	45	8	12	33	1.72
7117494--7117556	24	2.6	24	84	0	81	65	17	7	9	1.46
7117769--7117799	14	2.2	14	94	0	53	58	3	12	25	1.50
7118341--7118575	20	11.6	20	71	5	132	37	22	19	20	1.95
7118402--7118572	40	4.2	40	86	1	216	36	22	19	21	1.95
7119136--7119207	20	3.6	19	75	5	63	48	20	15	15	1.81
7119151--7119210	21	2.9	21	78	9	70	46	20	18	15	1.84
7119239--7119371	33	3.8	33	85	8	167	12	21	20	45	1.84
7119314--7119370	20	2.9	19	84	7	69	14	22	21	42	1.88
7119234--7119379	19	8.1	19	72	17	132	13	22	19	45	1.84
7119303--7119379	40	1.9	39	86	2	109	14	22	18	45	1.85
7120225--7120308	19	4.4	19	86	0	114	14	17	16	51	1.77
7120320--7120367	20	2.4	20	89	0	69	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7122794--7122845	24	2.2	24	82	0	59	38	19	19	23	1.93
7123693--7123982	20	14.4	20	75	12	227	20	17	23	39	1.92
7124032--7124085	20	2.7	19	75	8	63	16	18	31	33	1.93
7125109--7125152	22	2.0	21	82	4	52	45	2	4	47	1.35
7125302--7125417	57	2.0	57	96	0	214	38	17	7	36	1.78
7125573--7125923	111	3.1	112	93	1	596	25	15	13	44	1.84
7127204--7127241	3	12.7	3	88	0	58	65	0	34	0	0.93
7134781--7134830	22	2.4	21	80	9	59	30	6	0	64	1.18
7135471--7135561	30	3.0	30	86	1	128	38	38	2	20	1.65
7136491--7136555	22	3.0	22	88	2	96	24	6	49	20	1.71
7137898--7137932	16	2.2	16	89	0	52	48	0	0	51	1.00
7138939--7138976	20	1.9	20	88	0	58	39	18	15	26	1.91
7141927--7141977	26	2.0	26	84	7	68	39	0	23	37	1.55
7146042--7146091	20	2.5	20	96	0	91	32	6	24	38	1.79
7151266--7151304	20	2.0	20	89	0	60	33	10	23	33	1.88
7153847--7153895	2	24.5	2	100	0	98	51	0	0	48	1.00
7156401--7156642	104	2.3	103	81	11	256	45	18	15	20	1.85
7161070--7161124	27	2.0	27	89	0	83	36	25	10	27	1.89
7163132--7163209	31	2.5	31	93	0	129	46	20	15	17	1.84
7184724--7184751	14	2.0	14	100	0	56	28	0	0	71	0.86
7185687--7185731	23	2.0	23	86	0	63	37	15	8	37	1.79
7185603--7185765	87	1.9	87	96	0	299	30	13	12	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7186112--7186256	60	2.4	60	89	2	211	31	17	6	44	1.76
7186112--7186284	60	2.9	60	83	6	174	30	17	6	44	1.75
7186872--7186985	60	1.9	60	83	3	149	42	6	17	33	1.74
7187127--7187175	20	2.5	20	96	0	89	40	8	14	36	1.75
7190477--7190515	18	2.2	18	90	0	60	17	30	17	33	1.94
7195550--7195588	18	2.2	18	85	0	51	20	30	17	30	1.96
7195629--7195674	24	1.9	24	95	0	83	36	28	4	30	1.76
7201258--7201297	20	2.0	20	100	0	80	35	0	10	55	1.34
7202662--7202808	74	2.0	73	96	4	269	38	19	17	25	1.93
7214925--7214959	2	17.5	2	100	0	70	48	0	0	51	1.00
7215633--7215687	22	2.5	22	75	0	56	29	9	23	38	1.85
7216995--7217038	21	2.1	21	91	0	70	38	13	11	36	1.81
7217758--7217790	17	1.9	17	93	0	57	57	0	0	42	0.98
7217760--7217804	22	2.0	22	82	0	54	64	0	0	35	0.94
7219277--7219512	117	2.0	117	97	0	445	28	35	18	17	1.94
7220866--7220914	6	8.2	6	82	8	64	48	18	2	30	1.59
7220869--7220914	24	1.9	24	90	0	74	45	19	2	32	1.62
7221618--7221715	34	3.0	34	89	5	148	44	13	21	20	1.85
7223299--7223432	2	67.0	2	100	0	268	50	50	0	0	1.00
7224598--7224983	170	2.3	170	82	3	420	33	18	18	29	1.94
7225069--7225101	8	4.1	8	92	0	57	36	33	0	30	1.58
7228099--7228164	23	2.9	23	76	0	69	30	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7230122--7230247	53	2.4	52	87	10	179	25	8	10	55	1.62
7230122--7230248	26	4.9	26	74	21	124	25	8	10	55	1.61
7230078--7230247	25	6.5	26	77	13	154	23	8	10	57	1.61
7230295--7230426	25	5.4	23	78	10	138	46	29	0	24	1.53
7236837--7236870	2	17.0	2	93	0	59	50	0	2	47	1.16
7243466--7243606	64	2.2	63	81	10	171	31	17	24	26	1.97
7243594--7243651	20	2.7	20	84	10	71	32	18	22	25	1.97
7247514--7247654	64	2.2	63	80	10	162	31	18	24	26	1.98
7247642--7247699	20	2.6	22	89	10	84	31	20	22	25	1.98
7255776--7255800	10	2.5	10	100	0	50	92	0	8	0	0.40
7256406--7256448	20	2.2	20	91	0	68	32	11	20	34	1.89
7265190--7265214	7	3.6	7	100	0	50	88	0	12	0	0.53
7267904--7267951	10	4.6	10	77	10	51	16	29	29	25	1.97
7267882--7267951	32	2.2	32	82	5	79	20	30	24	25	1.99
7274261--7274298	20	1.9	20	88	0	58	26	34	26	13	1.93
7274304--7274343	21	1.9	21	85	10	55	25	37	25	12	1.91
7277772--7277810	19	2.1	19	95	0	69	20	33	15	30	1.94
7277727--7277936	64	3.3	65	78	12	215	29	23	18	28	1.98
7277894--7277953	8	6.8	9	73	17	54	23	26	21	28	1.99
7277888--7277953	17	3.7	17	89	6	87	24	27	21	27	1.99
7279997--7280036	20	2.0	21	85	14	57	37	15	5	42	1.68
7279996--7280040	20	2.2	20	80	11	56	40	13	4	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7284990--7285028	19	2.1	19	95	0	69	20	33	15	30	1.94
7284945--7285136	64	3.0	63	79	10	185	29	23	18	28	1.98
7285510--7286156	320	2.0	323	90	4	1042	28	17	19	34	1.94
7286571--7286605	15	2.3	15	95	0	61	25	11	22	40	1.88
7288485--7288725	88	2.7	88	87	1	340	21	23	24	29	1.99
7290312--7290418	51	2.1	51	81	6	130	36	14	8	40	1.77
7293351--7293398	16	3.0	16	84	0	60	18	27	25	29	1.98
7295393--7295437	20	2.2	20	88	0	63	44	20	13	22	1.85
7295981--7296251	88	3.0	88	87	2	371	22	23	25	28	1.99
7296723--7296767	20	2.1	22	84	12	58	35	6	6	51	1.55
7299152--7299206	21	2.6	22	73	18	55	54	9	0	36	1.32
7299572--7299610	18	2.2	18	86	13	55	33	0	0	66	0.92
7299618--7299660	15	2.9	14	83	13	50	67	0	0	32	0.91
7299635--7299665	16	1.9	16	93	0	53	64	0	0	35	0.94
7299619--7299665	23	2.0	23	88	8	69	63	0	0	36	0.94
7309462--7309495	14	2.5	13	86	9	50	52	0	11	35	1.38
7321684--7321722	19	2.1	19	100	0	78	33	20	25	20	1.97
7326547--7326646	21	4.8	21	70	16	73	20	42	18	20	1.90
7326555--7326678	42	2.9	43	84	3	153	20	40	17	20	1.92
7326719--7326856	21	6.6	21	87	5	165	27	41	8	22	1.83
7326719--7326856	42	3.3	42	86	8	183	27	41	8	22	1.83
7326719--7326909	63	3.0	63	81	7	176	27	40	8	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7326779--7326981	21	9.7	21	82	3	158	25	42	7	24	1.80
7326719--7326909	42	4.6	41	85	6	167	27	40	8	23	1.83
7326743--7326939	63	3.1	63	79	8	161	26	41	8	23	1.82
7326963--7327014	21	2.5	22	87	6	72	19	40	15	25	1.90
7326943--7327066	21	5.9	20	73	9	70	22	41	9	26	1.85
7326943--7327066	63	2.0	63	81	0	149	22	41	9	26	1.85
7331445--7331526	38	2.2	38	79	14	89	51	3	1	43	1.27
7332110--7332183	36	2.0	37	82	7	89	50	5	0	44	1.25
7332999--7333069	37	1.9	37	97	0	133	29	15	18	36	1.92
7338762--7338801	2	20.0	2	100	0	80	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39