genome.fa.s7960.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7905731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   

This is table  38  of  39  ( 4646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7342082--7342166	42	2.0	45	90	6	140	40	4	24	30	1.76
7344885--7344954	35	2.0	35	97	0	131	44	22	0	32	1.53
7354313--7354830	260	2.0	260	94	0	919	30	17	13	37	1.89
7360472--7360515	20	2.2	20	95	0	79	47	27	13	11	1.77
7360631--7360688	22	2.6	22	83	0	80	25	41	13	18	1.88
7361035--7361065	14	2.2	14	94	0	53	48	25	19	6	1.72
7363252--7363349	21	4.7	20	86	3	115	23	33	22	20	1.97
7363252--7363368	42	2.8	42	86	0	144	23	34	20	21	1.97
7363276--7363368	21	4.4	21	83	0	87	24	34	20	20	1.96
7364372--7364451	20	4.1	20	85	1	108	21	17	20	41	1.91
7365494--7365547	24	2.2	24	90	0	81	40	20	16	22	1.91
7366485--7366560	19	3.9	20	86	3	102	31	11	22	34	1.90
7366485--7366575	19	4.6	19	84	5	94	29	10	21	37	1.88
7383021--7383057	15	2.5	15	90	0	56	8	16	67	8	1.40
7383847--7383971	59	2.1	60	86	1	171	43	3	19	34	1.67
7392226--7392263	20	1.9	20	100	0	76	28	28	5	36	1.79
7392421--7392447	13	2.1	13	100	0	54	40	0	7	51	1.30
7396180--7396210	15	2.0	16	93	6	55	6	45	16	32	1.72
7410459--7410497	17	2.3	17	86	8	53	25	2	0	71	0.98
7410475--7410510	12	2.8	13	83	8	56	22	0	0	77	0.76
7410478--7410518	12	3.0	14	82	10	50	24	0	2	73	0.96
7413773--7413819	21	2.3	20	82	7	60	40	6	14	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7413813--7413868	22	2.4	23	82	5	69	48	16	14	21	1.81
7414811--7414868	22	2.6	22	91	0	98	24	20	22	32	1.98
7418907--7418968	22	2.8	23	87	7	76	51	12	1	33	1.50
7418922--7418968	22	2.1	22	96	0	85	48	12	2	36	1.53
7421219--7421257	19	2.1	19	95	0	69	35	17	23	23	1.95
7421801--7421839	20	2.0	20	84	0	51	25	20	7	46	1.77
7422159--7422236	38	2.1	38	87	4	113	43	29	8	17	1.80
7424702--7424819	35	3.3	34	85	9	155	44	18	5	31	1.71
7429236--7429348	35	3.2	35	91	3	165	45	20	3	30	1.68
7431048--7431137	36	2.5	36	94	3	155	55	0	4	40	1.20
7438624--7438662	20	2.0	20	100	0	78	41	10	25	23	1.86
7438623--7438669	20	2.5	18	87	12	76	42	8	25	23	1.82
7442230--7442261	16	2.0	16	93	0	55	65	0	0	34	0.93
7443656--7443704	23	2.1	24	85	11	66	44	0	2	53	1.12
7443667--7443735	35	2.0	35	85	5	95	44	1	4	49	1.31
7443863--7443896	16	2.1	16	88	0	50	44	0	0	55	0.99
7443985--7444037	19	2.8	19	77	8	63	56	0	1	41	1.10
7462655--7462710	29	1.9	30	85	7	80	46	3	23	26	1.68
7463012--7463073	31	2.0	31	93	0	106	35	25	12	25	1.92
7465724--7465806	42	2.0	41	93	4	141	30	15	22	31	1.95
7465721--7465834	46	2.6	44	85	10	164	31	14	22	31	1.93
7470331--7470361	16	1.9	16	100	0	62	58	22	12	6	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7470429--7470483	10	5.4	10	72	20	51	56	21	12	9	1.64
7470430--7470477	16	3.1	16	87	6	80	56	22	12	8	1.63
7470683--7470747	12	5.6	12	85	7	98	21	30	23	24	1.99
7470677--7470747	23	3.1	23	100	0	142	22	29	22	25	1.99
7470677--7470738	11	5.5	11	84	7	88	22	29	20	27	1.99
7471620--7471672	14	4.1	14	81	18	78	50	26	15	7	1.70
7471610--7471671	24	2.6	24	94	0	106	53	24	12	9	1.69
7473779--7473814	17	2.1	17	89	0	54	38	5	2	52	1.39
7482417--7482477	31	2.0	31	90	0	95	44	22	11	21	1.84
7482512--7482542	16	1.9	16	100	0	62	51	19	9	19	1.74
7484224--7484263	14	2.9	14	96	0	71	22	0	27	50	1.50
7484221--7484275	21	2.6	21	79	0	65	23	0	32	43	1.54
7484828--7484933	55	1.9	55	84	0	140	26	15	21	36	1.93
7485732--7485776	21	2.1	21	87	0	63	31	28	24	15	1.96
7487153--7487180	14	2.0	14	100	0	56	28	7	28	35	1.84
7487281--7487595	149	2.1	149	97	1	596	26	18	20	34	1.96
7487563--7487607	23	2.0	23	90	0	72	22	26	26	24	2.00
7490749--7490782	2	17.0	2	87	0	50	55	0	0	44	0.99
7492604--7492633	4	7.5	4	100	0	60	73	0	0	26	0.84
7508999--7509038	21	2.0	20	90	5	62	35	0	2	62	1.09
7512319--7512361	20	2.2	20	100	0	86	39	0	34	25	1.56
7516140--7516205	3	22.0	3	78	6	71	36	4	0	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7523769--7523823	17	3.2	17	82	10	76	76	0	23	0	0.79
7523773--7523873	6	15.3	6	75	20	71	77	0	20	1	0.87
7523784--7523870	7	12.7	7	76	13	67	78	0	19	2	0.86
7523769--7523874	17	6.5	17	70	20	68	76	0	21	1	0.88
7526300--7526460	75	2.1	75	96	2	297	36	18	14	31	1.90
7528463--7528517	22	2.5	22	93	0	101	34	10	14	40	1.81
7529191--7529538	76	4.6	76	98	0	655	23	20	22	33	1.97
7529472--7529575	45	2.3	45	88	0	145	26	20	19	33	1.96
7529396--7529647	121	2.1	121	94	0	441	23	19	21	35	1.96
7529804--7529857	3	18.0	3	81	7	65	37	1	0	61	1.07
7531643--7531674	2	16.0	2	100	0	64	50	0	0	50	1.00
7536988--7537111	18	6.9	18	90	0	185	25	31	23	20	1.98
7540989--7541055	25	2.6	25	90	2	98	44	1	8	44	1.44
7541254--7541278	2	12.5	2	100	0	50	52	0	0	48	1.00
7546659--7546696	19	2.1	19	85	9	53	47	13	23	15	1.81
7551397--7551480	28	3.0	28	96	0	150	32	25	13	29	1.93
7552061--7552158	31	3.3	30	75	16	96	47	1	6	44	1.34
7560998--7561061	23	2.8	23	90	0	101	26	26	28	18	1.98
7561072--7561294	103	2.2	103	100	0	446	36	25	13	25	1.91
7562046--7562266	64	3.5	63	81	6	232	28	18	19	33	1.96
7566437--7566500	23	2.8	23	85	0	101	29	26	26	17	1.97
7566511--7566733	103	2.2	103	98	0	428	36	25	13	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7567485--7567705	64	3.5	64	82	7	245	28	19	19	33	1.96
7574505--7574534	13	2.2	14	94	5	53	0	33	0	66	0.92
7575839--7575893	23	2.4	23	78	0	74	18	21	25	34	1.96
7578480--7578527	22	2.2	22	81	7	53	27	20	2	50	1.60
7578729--7578801	30	2.4	30	95	0	128	30	24	20	24	1.99
7579571--7579620	20	2.4	21	80	6	57	20	20	24	36	1.95
7580015--7580067	26	2.0	26	89	7	81	32	16	3	47	1.65
7583846--7583918	30	2.4	30	95	0	128	30	24	20	24	1.99
7585403--7585442	21	2.0	20	85	5	53	22	2	7	67	1.28
7585694--7585756	22	2.7	24	75	7	67	39	1	1	57	1.18
7585713--7585752	20	2.1	19	85	4	53	40	0	0	60	0.97
7585883--7585925	2	22.0	2	83	4	52	46	2	0	51	1.13
7585874--7585917	23	1.9	23	85	0	61	43	2	0	54	1.12
7585814--7586069	141	1.8	139	92	0	404	40	7	6	45	1.57
7585918--7586218	164	1.9	163	84	8	418	41	5	5	46	1.53
7588867--7588901	7	5.0	7	93	6	54	2	28	0	68	1.04
7589924--7589966	6	7.2	6	97	0	68	16	55	0	27	1.41
7593346--7593374	2	14.5	2	100	0	58	51	0	0	48	1.00
7603692--7603749	2	29.0	2	100	0	116	50	0	0	50	1.00
7606669--7606785	28	4.2	28	77	12	123	40	3	20	35	1.69
7606652--7606785	56	2.4	55	80	12	132	37	3	20	38	1.71
7613242--7613382	29	4.9	28	79	5	138	36	2	21	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7613240--7613381	58	2.5	57	82	5	169	36	2	21	38	1.69
7613285--7613398	29	3.9	29	76	16	92	38	1	21	38	1.64
7614452--7614505	26	2.1	26	82	0	63	24	7	20	48	1.75
7635076--7635105	2	15.0	2	100	0	60	50	0	0	50	1.00
7636496--7636541	20	2.3	20	88	0	74	39	6	15	39	1.73
7640611--7640686	38	2.0	38	92	0	125	50	18	7	23	1.73
7649383--7649413	15	2.1	15	93	0	53	45	0	0	54	0.99
7649573--7649629	19	2.9	20	81	5	80	22	22	8	45	1.80
7669068--7669194	51	2.5	50	85	1	164	16	33	30	18	1.94
7671627--7671750	50	2.5	51	88	4	189	26	22	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39