genome.fa.s7999.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11700749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  45  of  50  ( 5918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10622236--10622406	20	8.4	20	79	3	191	19	18	23	37	1.94
10622236--10622406	40	4.2	40	90	0	252	19	18	23	37	1.94
10622959--10623049	34	2.7	34	81	6	89	27	17	3	51	1.61
10622979--10623049	34	2.1	34	89	0	106	25	14	4	56	1.56
10624467--10624498	14	2.4	14	94	5	57	18	12	6	62	1.50
10625663--10625722	24	2.5	24	76	10	68	28	16	16	38	1.91
10627977--10628012	6	6.0	6	86	0	54	61	19	2	16	1.47
10627979--10628019	18	2.3	18	95	0	73	56	24	2	17	1.53
10628470--10628519	25	2.0	25	96	0	91	26	8	22	44	1.80
10628905--10628941	18	2.1	18	89	0	56	29	8	10	51	1.65
10628897--10628949	24	2.2	24	89	0	79	33	5	13	47	1.66
10630139--10630175	14	2.6	14	91	0	65	48	18	0	32	1.49
10631591--10631689	21	4.7	21	75	8	94	22	17	35	25	1.95
10631591--10631689	42	2.4	42	78	10	112	22	17	35	25	1.95
10634311--10634366	22	2.5	22	76	0	67	17	16	41	25	1.89
10634471--10634592	20	6.1	20	90	0	181	17	16	23	42	1.88
10634597--10634648	20	2.5	20	81	3	59	25	13	21	40	1.89
10635678--10635715	18	2.1	18	85	9	51	44	0	0	55	0.99
10642106--10642158	20	2.6	20	84	3	61	30	16	32	20	1.95
10644888--10644931	16	2.9	15	90	6	70	36	4	27	31	1.77
10650390--10650504	51	2.3	51	92	0	194	18	6	33	41	1.75
10653987--10654038	25	2.2	22	86	10	68	75	0	3	21	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10655246--10655400	34	4.5	35	70	17	112	44	5	3	46	1.43
10655252--10655329	37	2.2	37	81	9	90	43	3	1	51	1.28
10655302--10655358	29	2.0	29	85	0	78	42	7	5	45	1.53
10655322--10655588	36	7.2	36	72	16	122	40	6	4	47	1.51
10655396--10655461	34	1.9	34	84	0	87	34	4	4	56	1.40
10655465--10655586	38	3.3	37	81	7	131	42	7	4	45	1.51
10655574--10655608	2	18.0	2	94	5	63	48	0	0	51	1.00
10656219--10656903	84	8.3	82	80	6	717	23	20	24	30	1.99
10656188--10656944	165	4.6	162	84	5	691	23	20	25	30	1.99
10656244--10656944	249	2.8	248	85	3	831	23	20	24	30	1.99
10661960--10662011	25	2.2	22	86	10	68	75	0	3	21	0.97
10663273--10663329	29	2.0	29	85	0	78	43	7	5	43	1.54
10663293--10663370	34	2.2	36	84	6	106	44	5	5	44	1.48
10663392--10663435	17	2.5	18	82	10	56	38	0	2	59	1.10
10663439--10663562	38	3.3	38	80	4	144	41	7	4	46	1.50
10663428--10663562	36	3.6	36	80	6	119	41	8	4	45	1.54
10663815--10664049	113	2.1	111	84	5	312	42	12	9	34	1.75
10667961--10668022	31	2.0	31	100	0	124	22	16	38	22	1.92
10668101--10668188	29	3.0	29	84	0	122	19	32	32	14	1.92
10669794--10670028	113	2.1	111	84	2	308	42	12	10	34	1.77
10672488--10672522	17	2.1	17	89	5	54	82	2	11	2	0.88
10675832--10676105	149	1.8	149	80	1	334	34	18	25	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10678867--10678942	38	2.0	38	92	0	125	35	18	14	31	1.91
10679431--10679528	50	1.9	51	87	2	144	22	18	15	43	1.87
10679472--10679597	65	1.9	65	85	3	173	27	20	13	38	1.90
10679554--10679740	36	5.1	37	79	8	188	27	19	13	39	1.89
10679562--10679740	73	2.4	73	84	8	213	26	19	13	40	1.89
10679757--10679954	36	5.5	35	67	8	110	28	21	14	35	1.92
10679778--10679954	73	2.4	73	90	0	275	28	22	14	35	1.93
10680255--10680697	91	4.9	91	77	8	474	37	16	20	24	1.93
10680829--10681225	132	3.0	132	88	2	586	29	21	18	30	1.97
10680839--10681177	44	7.7	44	69	3	162	29	21	18	29	1.97
10681188--10681371	96	1.9	95	87	5	273	29	22	17	29	1.97
10681662--10681718	19	3.0	19	81	0	69	75	7	12	5	1.17
10684233--10684276	23	1.9	23	90	0	70	36	27	22	13	1.92
10684325--10684423	42	2.4	41	79	3	99	38	21	16	24	1.93
10684494--10684542	21	2.5	20	78	18	57	38	22	2	36	1.66
10684801--10684865	30	2.2	30	100	0	130	43	13	3	40	1.60
10685211--10685258	23	2.1	23	96	0	87	45	2	8	43	1.45
10685376--10685423	24	2.0	24	87	0	69	39	16	8	35	1.79
10685400--10685457	30	1.9	31	85	3	82	39	15	6	37	1.74
10693053--10693150	39	2.5	39	85	8	128	21	37	2	38	1.65
10698630--10698727	39	2.5	40	82	11	114	22	35	2	39	1.66
10699534--10699563	15	2.0	15	93	0	51	26	16	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10701622--10701761	36	3.9	35	84	2	181	34	19	27	19	1.96
10705274--10705323	3	16.7	3	80	15	59	36	0	0	64	0.94
10705274--10705335	10	5.8	10	82	17	72	38	0	0	61	0.96
10705452--10705550	25	4.0	25	93	3	157	37	20	14	28	1.91
10705899--10705929	15	2.1	15	94	5	55	70	0	29	0	0.87
10705899--10705937	15	2.6	14	80	11	51	66	0	33	0	0.92
10720081--10720389	130	2.3	130	85	4	424	26	29	19	24	1.98
10720579--10720636	9	5.8	10	84	15	68	37	0	0	62	0.96
10720579--10720624	3	15.7	3	82	13	60	34	0	0	65	0.93
10720753--10720851	25	4.0	25	92	3	157	36	19	16	28	1.93
10721200--10721238	15	2.7	15	88	4	62	66	0	33	0	0.92
10724925--10725035	39	2.8	39	79	12	129	34	19	0	45	1.51
10725868--10725919	14	3.4	16	73	26	58	48	0	3	48	1.20
10725870--10725925	29	1.9	29	85	7	78	46	1	5	46	1.36
10727306--10727331	13	2.0	13	100	0	52	30	15	15	38	1.88
10728182--10728316	58	2.3	58	96	0	243	27	12	22	37	1.91
10728303--10728358	21	2.7	21	97	0	103	23	14	32	30	1.94
10728245--10728439	100	2.0	100	96	0	363	26	12	27	33	1.92
10729556--10729615	24	2.6	24	84	5	70	48	3	3	45	1.35
10730506--10730579	31	2.4	31	86	4	96	37	18	13	29	1.90
10737419--10737481	21	2.9	21	83	4	63	20	38	25	15	1.92
10737463--10737502	21	1.9	21	89	0	62	25	40	25	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748398--10748431	16	2.1	17	94	5	61	0	14	5	79	0.91
10748674--10748764	27	3.4	27	98	0	173	19	18	42	18	1.89
10748882--10748994	3	36.7	3	82	5	136	60	0	1	37	1.14
10749636--10750278	113	5.7	113	89	6	921	30	20	13	35	1.91
10750749--10750803	22	2.5	22	90	0	92	38	14	12	34	1.84
10751175--10751375	54	3.8	53	83	6	232	24	21	14	38	1.92
10751175--10751375	104	1.9	104	85	6	278	24	21	14	38	1.92
10752507--10752706	104	1.9	104	89	0	310	36	20	11	32	1.88
10752726--10753281	84	6.7	84	95	2	960	36	21	13	28	1.92
10752726--10753283	249	2.2	251	94	2	964	36	21	13	28	1.91
10756804--10756833	1	30.0	1	100	0	60	0	0	0	100	0.00
10758142--10758181	14	2.9	14	88	0	62	55	5	12	27	1.58
10759605--10759641	15	2.7	15	88	12	53	62	8	5	24	1.44
10761483--10761516	16	2.1	17	94	5	61	0	14	5	79	0.91
10761759--10761849	27	3.4	27	98	0	173	19	18	42	18	1.89
10761967--10762087	3	39.7	3	86	3	170	61	0	1	35	1.11
10764552--10764587	15	2.4	15	85	0	54	19	16	11	52	1.73
10765076--10765145	34	2.0	35	83	8	90	27	8	14	50	1.72
10765240--10765277	20	1.9	19	89	5	58	7	18	5	68	1.34
10773907--10774046	30	4.7	30	81	7	142	55	10	16	17	1.69
10773909--10774116	60	3.5	59	77	7	183	54	9	16	20	1.69
10773977--10774109	30	4.5	29	75	6	99	56	8	15	20	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10775858--10776173	134	2.4	134	92	1	508	23	18	31	27	1.97
10776381--10776439	30	2.0	30	93	0	100	44	13	11	30	1.80
10776393--10776460	29	2.3	30	87	2	93	48	17	14	19	1.81
10776635--10776709	31	2.4	32	84	4	91	41	13	14	30	1.84
10776731--10776845	30	3.9	29	75	7	88	40	11	19	29	1.86
10776791--10776849	29	2.0	29	87	6	84	37	11	15	35	1.84
10776882--10777046	29	5.6	29	76	9	138	42	12	12	32	1.81
10777024--10777234	66	3.2	64	84	7	264	43	13	10	31	1.79
10777035--10777232	64	3.1	64	85	7	267	43	14	10	31	1.78
10777299--10777357	31	1.9	31	93	3	102	44	13	13	28	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50