genome.fa.s7999.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11700749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   

This is table  50  of  50  ( 5918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11668486--11668515	14	2.1	15	93	6	53	46	6	0	46	1.29
11668648--11668699	24	2.2	24	89	0	77	51	9	3	34	1.53
11676351--11676443	21	4.6	20	75	4	87	38	17	24	19	1.92
11676348--11676443	41	2.3	41	94	0	174	39	16	23	19	1.92
11676432--11676525	20	4.7	20	77	2	80	35	24	17	23	1.95
11676429--11676506	41	1.9	41	83	0	102	41	21	15	21	1.90
11677110--11677270	20	8.8	19	71	16	117	12	20	22	44	1.84
11677158--11677245	33	2.6	33	89	1	131	11	22	25	40	1.87
11679271--11679393	42	2.9	42	80	2	122	22	36	17	22	1.95
11679327--11679393	21	3.2	21	66	6	55	23	35	20	19	1.95
11680751--11680786	14	2.6	14	95	0	63	30	0	25	44	1.54
11680893--11680959	19	3.8	19	72	23	65	44	20	22	11	1.84
11680964--11681081	19	6.7	19	65	19	67	14	23	19	42	1.88
11680968--11681058	33	2.8	33	98	0	173	12	25	18	43	1.84
11683352--11683376	12	2.1	12	100	0	50	0	28	0	72	0.86
11684845--11684881	14	2.6	14	86	0	56	48	21	0	29	1.50
11685246--11685296	20	2.5	20	93	0	84	33	23	23	19	1.97
11685327--11685380	14	3.5	14	73	22	54	12	20	18	48	1.81
11685322--11685396	33	2.3	33	88	0	105	13	24	20	42	1.87
11685487--11685523	14	2.6	14	86	0	56	48	21	0	29	1.50
11687390--11687445	20	2.9	19	92	5	94	37	23	23	16	1.93
11687445--11687502	14	3.9	14	77	16	62	50	25	15	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11687429--11687507	32	2.4	33	93	2	133	48	24	17	10	1.78
11687514--11687608	18	5.6	17	71	22	69	11	20	23	45	1.83
11687536--11687593	14	3.9	14	79	16	71	8	17	25	48	1.75
11687519--11687608	32	2.8	33	93	5	157	11	18	23	46	1.81
11687602--11687647	20	2.3	20	88	0	65	15	21	26	36	1.93
11688119--11688163	18	2.5	18	85	0	63	15	15	42	26	1.87
11689478--11689515	20	1.9	20	88	0	58	50	21	15	13	1.78
11689777--11689820	22	2.0	22	95	0	79	18	15	45	20	1.85
11689989--11690084	20	4.6	22	71	12	69	22	16	21	38	1.93
11689989--11690086	41	2.4	41	84	0	133	22	16	21	39	1.92
11690011--11690145	41	3.3	41	81	4	130	20	21	20	37	1.94
11690072--11690164	20	4.6	20	78	4	96	18	24	18	38	1.92
11690072--11690167	41	2.3	41	98	0	183	18	23	17	39	1.92
11690744--11690774	2	15.5	2	100	0	62	48	0	0	51	1.00
11691467--11691503	18	2.1	18	89	0	56	24	24	8	43	1.81
11700709--11700735	14	1.9	14	100	0	54	29	11	22	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50

The End!