genome.fa.s8082.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  10  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1694260--1694988	90	8.2	90	89	2	1098	26	18	20	34	1.96
1695022--1695099	37	2.1	36	83	2	93	32	16	11	39	1.85
1695115--1695201	36	2.4	37	83	9	115	28	17	11	42	1.84
1695058--1695253	103	1.9	103	80	8	229	28	18	14	39	1.89
1695152--1695322	65	2.6	67	81	2	193	22	21	16	39	1.92
1695633--1696805	91	12.9	91	91	0	1862	37	15	22	24	1.93
1696289--1696352	17	3.3	19	69	20	51	42	12	21	23	1.87
1696816--1697275	133	3.5	133	82	3	514	31	20	18	28	1.97
1697226--1697322	47	2.1	47	82	3	115	30	21	21	25	1.98
1703513--1703548	6	6.0	6	86	0	54	19	13	13	52	1.74
1705319--1705350	13	2.6	13	85	14	50	25	15	9	50	1.74
1709339--1709502	36	4.5	36	81	5	197	35	23	17	23	1.95
1709349--1709502	72	2.1	71	89	2	227	35	22	17	24	1.95
1709488--1709934	214	2.1	215	92	1	752	33	15	18	31	1.93
1710395--1710478	41	2.0	41	100	0	168	40	22	11	25	1.88
1712890--1712957	29	2.3	29	87	0	100	30	19	7	42	1.78
1712890--1712999	29	3.7	29	77	15	86	34	17	5	42	1.72
1712941--1712999	31	2.0	30	87	12	86	35	16	3	44	1.65
1712911--1713012	29	3.4	29	78	7	98	31	16	6	45	1.74
1717361--1717444	32	2.6	32	82	0	105	47	7	2	42	1.43
1717786--1717912	31	4.1	31	87	2	193	44	7	8	39	1.64
1718178--1718221	23	1.9	23	90	9	72	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1719892--1720076	2	91.5	2	70	15	105	44	3	8	43	1.51
1719957--1720007	19	2.7	19	87	3	77	35	1	17	45	1.60
1720463--1720536	2	37.5	2	90	2	114	48	1	2	47	1.24
1739280--1739304	6	4.2	6	100	0	50	48	16	20	16	1.82
1739496--1739521	9	2.9	9	100	0	52	34	23	30	11	1.90
1740975--1741019	21	2.1	21	95	0	81	26	24	15	33	1.95
1741049--1741101	24	2.2	24	86	0	70	16	28	15	39	1.89
1742839--1742901	33	1.9	33	86	0	90	34	34	1	28	1.67
1742942--1742982	18	2.3	19	83	12	59	34	31	2	31	1.71
1742952--1742999	18	2.7	18	87	6	62	33	31	2	33	1.70
1743045--1743083	18	2.2	18	95	0	69	30	53	0	15	1.42
1745261--1745333	23	3.2	23	98	0	137	38	12	16	32	1.86
1745261--1745343	23	3.6	23	95	0	130	39	10	16	32	1.84
1745442--1745491	23	2.2	23	88	0	73	38	10	18	34	1.84
1745442--1745498	23	2.5	23	82	0	60	42	8	15	33	1.78
1745284--1745795	158	3.2	158	94	0	889	40	13	14	32	1.84
1745600--1745649	23	2.2	23	85	0	64	38	14	16	32	1.88
1746045--1746071	2	13.5	2	100	0	54	51	0	0	48	1.00
1747949--1747984	17	2.1	17	89	0	54	5	36	0	58	1.22
1748094--1748234	66	2.1	64	82	7	183	24	44	1	29	1.62
1749651--1749675	11	2.3	11	100	0	50	20	20	8	52	1.71
1751894--1751939	23	2.0	23	95	4	85	4	21	19	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1753386--1753410	10	2.5	10	100	0	50	52	16	0	32	1.44
1753805--1753893	39	2.3	39	86	0	133	31	22	28	17	1.97
1756625--1756716	44	2.0	47	89	8	145	56	11	2	29	1.47
1756742--1756772	2	15.5	2	100	0	62	51	48	0	0	1.00
1756774--1756815	2	21.0	2	95	0	75	50	2	0	47	1.14
1756938--1757037	39	2.6	39	80	1	121	33	20	26	21	1.97
1760810--1760860	20	2.6	20	93	3	86	33	21	3	41	1.72
1761716--1761758	21	2.0	21	81	0	50	53	20	0	25	1.46
1763279--1763350	34	2.1	35	84	2	92	38	22	1	37	1.63
1763736--1763989	127	2.0	123	87	3	364	37	13	12	37	1.82
1764448--1764481	16	2.0	18	88	11	54	64	5	2	26	1.30
1772379--1772587	60	3.5	60	83	2	224	20	29	8	41	1.82
1778407--1778455	19	2.7	17	84	9	53	26	20	28	24	1.99
1779672--1779715	21	2.1	21	82	0	52	31	13	43	11	1.80
1782240--1782294	13	4.2	13	88	0	83	20	47	16	16	1.83
1782271--1782314	15	3.1	15	83	6	56	20	36	20	22	1.95
1784762--1784861	24	4.2	24	70	7	69	23	14	17	46	1.83
1785033--1785061	2	14.5	2	100	0	58	48	0	0	51	1.00
1786711--1786776	13	4.7	13	74	17	60	19	46	15	18	1.83
1786705--1786777	31	2.4	31	83	0	92	19	46	17	16	1.84
1786724--1786763	18	2.2	18	95	0	71	17	47	17	17	1.83
1786741--1786782	13	3.2	13	89	0	66	19	42	21	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786759--1786805	15	3.3	15	79	5	53	19	36	21	23	1.95
1787645--1787710	24	2.8	24	77	6	62	24	15	15	45	1.84
1787875--1787910	2	18.0	2	100	0	72	50	0	0	50	1.00
1787919--1787962	13	3.4	13	87	0	70	20	45	20	13	1.85
1790461--1790560	24	4.2	24	74	5	94	22	14	17	47	1.82
1790726--1790751	2	13.0	2	100	0	52	50	0	0	50	1.00
1792406--1792463	13	4.3	13	77	4	53	20	37	20	20	1.94
1792383--1792428	18	2.6	18	85	0	65	19	45	19	15	1.85
1792437--1792470	15	2.3	15	94	0	59	17	35	23	23	1.95
1794949--1795055	24	4.5	24	74	0	106	21	14	16	47	1.82
1795214--1795239	2	13.0	2	100	0	52	50	0	0	50	1.00
1801422--1801564	65	2.2	65	85	6	184	25	19	24	30	1.98
1804259--1804303	19	2.4	18	82	17	56	28	8	13	48	1.72
1809289--1809412	24	5.2	25	84	8	82	41	18	14	25	1.88
1809306--1809421	24	4.8	24	89	4	171	39	18	16	25	1.91
1809337--1809439	48	2.1	48	85	7	138	41	18	15	24	1.89
1811891--1811949	31	1.9	31	96	0	109	13	16	45	23	1.83
1811885--1811972	18	5.2	18	71	18	89	13	18	46	21	1.83
1813855--1813879	3	8.3	3	100	0	50	68	0	0	32	0.90
1824229--1824258	15	1.9	16	93	6	53	26	10	20	43	1.83
1825606--1825673	23	3.0	22	86	0	82	26	26	26	20	1.99
1825690--1825902	103	2.1	103	96	0	390	36	23	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830695--1830763	23	3.0	23	89	0	102	26	26	27	20	1.99
1830768--1830984	100	2.2	100	90	5	341	35	23	14	26	1.93
1835627--1835695	23	3.0	23	89	0	102	26	26	27	20	1.99
1835718--1835913	99	2.0	97	92	4	322	36	22	14	27	1.93
1837165--1837206	22	2.0	22	85	4	59	9	28	35	26	1.88
1840778--1840846	23	3.0	23	89	0	102	26	26	27	20	1.99
1840862--1841074	103	2.1	103	97	0	399	36	23	14	25	1.93
1845698--1845766	23	3.0	23	89	0	102	26	26	27	20	1.99
1845793--1845986	96	2.0	98	94	2	347	35	23	14	26	1.93
1849456--1849493	8	4.8	8	81	12	51	68	2	28	0	1.03
1851428--1851466	20	2.0	20	85	10	53	48	12	5	33	1.63
1854213--1854253	15	2.6	16	81	14	50	31	4	0	63	1.15
1854919--1854964	22	2.0	22	83	8	56	28	19	8	43	1.80
1859304--1859363	21	3.0	21	85	9	81	23	18	30	28	1.98
1864439--1864525	41	2.1	42	91	2	140	24	20	21	33	1.97
1864299--1865330	251	4.1	250	86	0	1375	33	15	17	33	1.91
1865735--1866111	61	6.2	62	81	2	404	26	20	15	36	1.93
1866031--1866207	90	2.0	90	85	4	241	25	21	15	37	1.93
1866218--1866476	89	2.9	89	76	6	258	32	17	19	30	1.95
1866439--1866599	55	2.9	54	87	3	232	29	21	19	29	1.98
1866551--1866735	82	2.3	81	84	4	237	39	20	18	22	1.92
1868462--1868503	15	2.6	16	82	17	52	33	4	0	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871769--1871949	89	2.0	89	94	5	321	33	11	22	33	1.90
1874407--1874460	23	2.4	23	96	3	101	33	18	14	33	1.92
1876554--1876621	29	2.3	29	82	0	82	41	23	8	26	1.83
1876598--1876708	29	3.8	29	91	2	170	43	24	9	22	1.83
1876987--1877042	17	3.3	17	97	0	103	19	26	39	14	1.90
1883007--1883074	29	2.3	29	87	0	91	41	25	7	26	1.81
1883053--1883132	29	2.8	29	94	0	133	47	23	7	21	1.76
1883140--1883227	18	5.0	18	91	1	135	11	19	48	20	1.79
1884526--1884579	21	2.6	21	81	0	63	11	33	35	20	1.88
1885314--1885348	18	1.9	18	88	0	52	25	22	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28