genome.fa.s8082.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  3  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431870--431897	14	2.0	14	100	0	56	21	0	35	42	1.53
432055--432103	25	2.0	25	84	11	66	46	4	4	44	1.41
432789--433264	36	12.7	36	77	13	367	47	2	4	44	1.36
433004--433242	11	20.1	11	65	20	74	47	1	3	47	1.26
432954--433264	71	4.3	71	92	2	496	47	1	4	46	1.32
433265--433292	3	9.3	3	100	0	56	32	0	0	67	0.91
432954--433264	144	2.2	142	91	2	496	47	1	4	46	1.32
433299--433341	15	2.9	14	83	10	50	23	9	2	65	1.34
438393--439753	250	5.5	244	82	6	1236	30	24	19	24	1.98
438393--439797	165	8.5	163	81	5	1237	30	24	19	24	1.98
438393--439728	331	4.0	329	80	6	1386	30	25	19	24	1.98
438393--439757	84	16.5	83	78	5	1188	30	24	19	24	1.98
440387--440732	36	9.2	41	72	19	165	49	2	4	43	1.38
440429--440848	36	11.9	36	78	12	408	47	1	5	45	1.37
440433--440848	71	5.9	70	84	7	461	47	1	5	45	1.37
440710--440769	26	2.3	26	91	0	93	48	0	5	46	1.24
440675--440805	62	2.2	60	95	2	235	48	0	4	47	1.22
440663--440820	11	13.2	11	66	22	61	47	0	4	48	1.22
440846--440899	23	2.3	24	81	15	69	18	5	0	75	0.98
440463--440848	133	2.8	133	84	8	448	47	1	4	45	1.34
440843--440947	26	4.3	24	76	15	65	21	7	0	69	1.19
441510--441543	16	2.0	18	88	11	54	35	11	17	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447506--447550	21	2.1	21	100	0	90	26	20	22	31	1.98
451916--451952	2	18.5	2	100	0	74	48	0	0	51	1.00
460476--460539	23	2.6	23	82	9	74	35	18	20	25	1.95
465267--465334	28	2.5	27	90	4	109	11	8	35	44	1.72
466290--466340	26	2.0	26	88	0	75	35	9	21	33	1.86
474933--475132	71	2.8	71	85	1	267	37	11	23	28	1.89
474964--475076	37	3.1	37	64	12	99	36	12	23	28	1.91
477213--477260	21	2.3	21	92	0	78	37	25	29	8	1.85
477225--477271	21	2.2	21	92	0	76	34	25	29	10	1.90
478349--478524	36	4.9	36	88	2	219	20	21	19	38	1.93
478350--478530	72	2.5	72	88	1	247	19	22	18	39	1.93
487038--487063	10	2.6	10	100	0	52	46	34	11	7	1.69
491148--491213	19	3.5	19	81	6	80	34	0	1	63	1.04
496210--496244	2	18.0	2	88	5	54	51	0	0	48	1.00
497237--497269	17	1.9	17	88	11	50	33	3	0	63	1.10
501000--501037	20	2.0	19	90	10	60	15	5	21	57	1.57
509344--509388	21	2.1	21	91	0	72	24	22	48	4	1.68
509522--509547	2	13.0	2	100	0	52	50	0	0	50	1.00
536453--536511	24	2.4	25	80	8	68	45	1	5	47	1.34
536733--536871	59	2.3	59	81	8	156	38	6	23	31	1.80
537060--537107	16	3.1	16	78	3	53	8	12	29	50	1.69
537887--537917	16	1.9	16	93	0	53	38	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538087--538111	3	8.3	3	100	0	50	68	0	0	32	0.90
538689--538716	3	9.3	3	100	0	56	67	0	0	32	0.91
539848--539890	19	2.3	18	84	11	52	39	0	4	55	1.20
540100--540161	30	2.3	27	86	13	83	16	19	20	43	1.88
541294--541622	160	2.0	165	96	3	614	31	17	23	28	1.96
542092--542146	16	3.4	16	73	16	51	23	0	7	69	1.14
542547--542594	24	2.0	24	83	0	60	41	2	6	50	1.39
554349--554458	32	3.5	32	87	2	143	24	20	20	34	1.96
554349--554473	62	2.0	64	80	3	146	27	18	20	33	1.96
557110--557427	159	2.0	159	100	0	636	30	13	20	34	1.92
565997--566032	15	2.4	15	90	0	54	36	5	13	44	1.68
566200--566298	49	2.0	50	80	9	114	47	2	0	50	1.12
566382--566449	22	3.1	21	75	6	64	45	1	1	51	1.19
566428--566484	21	2.6	22	76	17	57	47	1	0	50	1.11
566440--566568	17	7.4	17	67	15	59	50	1	0	47	1.16
566419--566563	54	2.8	52	80	14	126	48	1	0	48	1.14
568781--569036	127	2.0	128	97	0	487	27	16	17	37	1.92
571008--571040	13	2.5	13	95	0	57	75	3	9	12	1.14
571803--571836	15	2.3	15	100	0	68	47	17	11	23	1.81
578212--578306	28	3.4	28	88	0	136	61	13	20	5	1.52
578197--578314	56	2.1	56	87	3	166	61	13	20	5	1.51
578310--578372	19	3.3	19	97	0	117	57	30	11	1	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582435--582519	28	2.9	30	79	10	95	57	12	22	7	1.59
583188--583242	29	1.9	28	82	10	67	34	3	10	50	1.55
584342--584471	43	3.0	42	82	7	154	37	11	19	31	1.87
586953--587045	18	4.9	18	79	10	105	26	30	21	21	1.98
586952--587048	20	5.1	20	80	8	121	26	28	21	22	1.99
586952--587045	38	2.5	38	87	0	143	26	29	21	22	1.99
591419--591462	9	4.3	11	75	24	51	20	0	2	77	0.88
591418--591464	22	2.2	21	85	11	60	19	0	2	78	0.85
591427--591477	26	1.9	27	88	11	79	17	1	1	78	0.94
591427--591477	27	1.9	26	88	4	75	17	1	1	78	0.94
592986--593020	13	2.7	13	86	0	52	8	14	0	77	0.99
596348--596395	17	2.7	18	75	12	55	29	0	4	66	1.10
604262--604322	24	2.5	24	83	0	77	45	16	16	21	1.85
604280--604329	24	2.1	24	88	0	73	44	14	20	22	1.86
604292--604337	24	1.9	24	81	0	56	50	10	15	23	1.75
611619--611932	157	2.0	157	100	0	628	15	23	21	38	1.92
618253--618327	30	2.5	31	78	6	91	38	18	4	38	1.70
618265--618364	28	3.5	28	82	4	92	40	17	4	39	1.68
618296--618368	28	2.6	28	86	0	101	39	19	4	36	1.71
624464--624748	111	2.5	114	86	6	400	30	33	16	18	1.94
625670--625765	29	3.3	29	80	8	104	43	19	4	32	1.70
625893--625918	5	5.2	5	100	0	52	0	19	61	19	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626959--627048	3	30.0	3	73	8	76	38	0	0	61	0.96
629235--629281	24	2.0	24	82	0	58	34	2	0	63	1.06
630882--630907	12	2.2	12	100	0	52	26	15	7	50	1.71
634030--634078	11	4.5	11	92	7	82	81	0	18	0	0.69
639548--639935	112	3.3	116	79	8	423	38	14	18	27	1.90
640270--640377	3	36.0	3	77	10	60	41	0	0	58	0.98
644264--644310	3	15.7	3	100	0	94	68	0	0	31	0.90
644500--644546	19	2.4	18	80	13	58	72	6	10	10	1.28
644500--644547	20	2.5	18	83	12	60	72	6	10	10	1.26
645630--645692	18	3.3	18	74	10	63	73	3	1	22	1.07
645810--646107	36	8.1	35	76	15	248	44	7	3	43	1.49
645810--646034	77	3.0	72	81	10	242	43	6	4	45	1.50
646075--646131	24	2.4	25	82	14	75	47	10	0	42	1.38
646144--646178	2	18.0	2	94	5	63	51	0	0	48	1.00
647187--647223	2	18.5	2	100	0	74	48	0	0	51	1.00
648500--648526	8	3.4	8	100	0	54	51	0	0	48	1.00
651291--651342	20	2.6	20	84	6	70	34	0	26	38	1.57
651392--651455	29	2.1	31	88	5	96	34	15	4	45	1.67
656577--656620	2	22.5	2	95	4	81	50	0	0	50	1.00
657667--657715	17	2.9	17	78	9	55	55	0	2	42	1.11
659200--659264	28	2.3	28	97	2	121	29	12	7	50	1.67
659604--659632	5	6.0	5	92	8	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665757--665976	75	2.9	75	93	0	377	35	20	13	30	1.91
670378--670435	30	1.9	30	89	6	91	22	27	20	29	1.99
672601--672658	30	1.9	30	96	0	107	24	27	20	27	1.99
672903--673059	74	2.1	76	93	2	273	35	21	13	29	1.92
677734--677939	65	3.2	65	92	4	339	21	20	21	35	1.96
677695--677919	107	2.1	104	86	4	308	21	20	20	37	1.95
677695--677939	21	11.5	21	78	12	186	21	20	21	36	1.95
678406--678472	30	2.3	30	81	2	82	35	29	10	23	1.89
687857--687885	14	2.1	14	100	0	58	27	13	17	41	1.87
687967--687995	15	2.0	15	93	6	51	79	0	0	20	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28