genome.fa.s8082.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  11  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1888436--1888470	18	1.9	18	88	0	52	25	22	25	25	2.00
1891741--1891775	18	1.9	18	88	0	52	25	22	25	25	2.00
1894082--1894154	32	2.3	32	80	2	85	31	32	20	15	1.93
1894843--1894877	18	1.9	18	88	0	52	25	22	25	25	2.00
1897173--1897244	32	2.3	32	80	2	83	31	31	20	15	1.94
1897933--1897967	18	1.9	18	88	0	52	25	22	25	25	2.00
1901033--1901067	18	1.9	18	88	0	52	25	22	25	25	2.00
1903602--1903663	12	5.2	12	84	0	88	53	16	19	11	1.72
1903602--1903680	24	3.3	24	87	3	106	53	16	16	13	1.74
1903602--1903680	36	2.2	36	81	4	97	53	16	16	13	1.74
1912360--1912423	17	3.8	17	87	4	85	29	25	15	29	1.96
1912690--1912752	31	2.0	31	100	0	126	33	19	19	28	1.96
1913876--1913905	2	15.5	2	93	6	53	50	0	0	50	1.00
1915158--1915206	23	2.1	23	96	0	89	34	2	14	48	1.55
1915463--1915551	21	4.2	21	82	5	90	24	2	26	46	1.65
1915498--1915559	7	8.9	7	83	0	70	22	1	32	43	1.63
1916062--1916123	11	5.8	11	72	14	58	38	1	1	58	1.18
1917708--1917750	22	2.0	21	86	9	59	58	2	0	39	1.11
1917715--1917783	29	2.3	30	80	7	79	62	1	1	34	1.13
1917760--1917799	16	2.4	17	87	4	55	70	0	7	22	1.12
1917779--1917818	20	2.0	20	85	0	53	65	2	7	25	1.32
1919141--1919190	3	16.7	3	82	0	64	58	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919357--1919602	76	3.2	76	92	1	402	34	18	18	27	1.95
1919536--1919647	45	2.4	45	89	2	161	32	20	22	25	1.98
1919460--1919891	121	3.5	121	92	1	666	33	20	20	25	1.97
1919581--1919723	76	1.9	74	87	5	207	33	21	20	23	1.97
1919655--1919768	45	2.5	45	85	5	140	32	21	21	25	1.98
1919786--1919976	45	4.2	45	83	7	242	32	19	21	25	1.97
1919778--1919976	92	2.2	92	93	3	341	32	20	22	24	1.98
1919915--1920110	76	2.6	76	90	1	306	33	21	20	24	1.97
1919655--1920057	213	1.9	213	93	1	691	33	20	21	25	1.97
1920759--1920825	19	3.2	21	73	14	66	40	11	10	37	1.77
1924976--1925040	7	9.3	7	79	15	64	0	16	0	83	0.66
1924983--1925037	13	4.1	14	77	11	62	0	14	0	85	0.60
1927734--1927774	6	6.0	7	78	16	50	58	12	14	14	1.63
1927852--1927934	43	1.9	43	85	0	112	32	21	12	33	1.90
1929282--1929372	46	1.9	49	82	10	118	29	18	13	38	1.89
1930629--1930718	2	46.5	2	91	6	150	47	0	1	51	1.08
1932506--1932571	3	21.7	3	90	3	105	62	0	0	37	0.96
1934592--1934631	18	2.3	17	86	4	53	27	22	25	25	2.00
1936478--1936623	77	1.9	78	84	4	197	43	6	11	38	1.68
1938582--1938724	73	2.0	73	87	1	207	46	9	6	37	1.63
1938833--1938882	22	2.3	21	80	10	55	54	22	6	18	1.65
1938842--1938885	22	2.0	22	90	0	70	59	20	2	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941067--1941695	102	6.2	100	79	9	559	42	14	10	33	1.79
1945807--1945844	20	1.9	20	88	0	58	21	26	10	42	1.85
1946509--1946546	2	19.5	2	94	5	69	47	0	0	52	1.00
1947147--1947178	14	2.3	14	100	0	64	6	15	28	50	1.68
1947148--1947198	24	2.1	24	85	0	66	11	11	21	54	1.68
1948277--1948333	16	3.6	16	90	0	96	8	7	22	61	1.50
1948721--1948761	19	2.2	19	100	0	82	9	51	12	26	1.70
1952440--1952491	25	2.0	28	81	11	65	44	0	0	55	0.99
1958082--1958107	7	3.7	7	100	0	52	53	0	0	46	1.00
1967910--1967955	24	1.9	24	86	0	65	23	23	28	23	2.00
1971333--1971382	24	2.1	24	85	7	66	30	0	0	70	0.88
1972551--1972596	24	1.9	24	86	0	65	19	8	0	71	1.11
1974844--1974919	24	3.2	24	98	0	143	40	26	17	15	1.89
1983516--1983553	15	2.4	16	83	16	53	55	15	5	23	1.61
1985913--1985981	9	7.8	9	73	13	63	33	0	0	66	0.92
1985914--1985981	27	2.5	28	81	9	79	33	0	0	66	0.92
1985913--1985976	17	3.5	19	81	10	80	35	0	0	64	0.94
1991415--1991439	12	2.1	12	100	0	50	40	24	16	20	1.91
1999439--1999508	30	2.4	29	83	7	79	54	2	1	41	1.24
1999479--1999523	21	2.1	21	84	8	56	53	2	4	40	1.33
2002950--2002983	8	4.2	8	92	0	59	38	2	0	58	1.13
2003259--2003577	54	5.9	53	87	5	345	23	23	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003259--2003577	108	2.9	108	84	6	380	23	23	21	31	1.98
2003564--2003801	55	4.4	55	84	3	315	28	26	15	29	1.96
2003564--2003802	108	2.2	110	85	3	317	28	26	15	30	1.96
2004721--2004771	8	6.5	8	86	11	61	11	7	0	80	0.90
2004729--2004771	15	2.9	15	86	6	61	13	4	0	81	0.84
2004722--2004771	23	2.2	23	85	0	64	12	8	0	80	0.92
2008280--2008307	8	3.5	8	100	0	56	50	10	0	39	1.37
2017840--2017873	8	4.2	8	92	0	59	38	2	0	58	1.13
2019823--2019957	29	4.6	29	85	2	171	38	2	11	47	1.53
2019823--2020037	58	3.7	58	76	10	172	38	2	10	48	1.52
2019823--2019985	29	5.6	27	77	13	121	38	3	11	47	1.56
2019823--2020036	88	2.5	85	80	11	197	37	2	10	49	1.52
2019993--2020046	29	1.9	27	85	7	72	37	1	1	59	1.19
2020012--2020052	19	2.2	19	86	0	55	34	2	2	60	1.23
2026648--2026685	20	1.9	20	88	0	58	21	26	10	42	1.85
2055550--2055584	18	1.9	18	88	11	54	54	0	34	11	1.37
2056291--2056344	21	2.6	21	77	19	67	27	16	20	35	1.94
2056415--2056443	15	1.9	15	100	0	58	41	31	0	27	1.56
2059827--2059963	33	4.2	33	77	0	130	32	23	21	23	1.98
2061827--2061863	19	2.1	18	90	10	58	43	5	8	43	1.57
2062591--2062667	31	2.5	31	80	2	91	27	31	27	14	1.95
2062544--2062667	63	2.0	63	82	6	153	25	29	28	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063536--2063573	7	5.4	7	100	0	76	26	28	28	15	1.96
2063570--2063649	5	14.8	5	76	14	70	8	22	50	18	1.74
2063563--2063649	22	4.0	22	98	0	165	10	22	48	18	1.78
2063646--2063744	9	10.3	9	75	10	81	29	29	27	14	1.95
2063652--2063745	19	4.8	19	77	13	86	29	29	25	14	1.95
2063671--2063745	29	2.5	31	87	8	120	29	29	26	14	1.95
2069937--2070013	31	2.5	31	80	2	91	27	31	27	14	1.95
2069890--2070013	63	2.0	63	82	6	153	25	29	28	16	1.97
2070883--2070920	7	5.4	7	100	0	76	26	28	28	15	1.96
2070917--2070969	5	9.8	5	76	15	52	7	22	50	18	1.72
2070922--2070970	17	2.9	17	100	0	98	10	22	48	18	1.77
2070910--2070952	22	2.0	22	100	0	86	9	23	48	18	1.76
2070966--2071064	9	10.3	9	73	10	72	29	28	27	15	1.96
2070972--2071065	19	4.8	19	76	13	77	29	28	25	15	1.96
2070991--2071065	29	2.5	31	87	8	120	29	29	26	14	1.95
2071027--2071065	21	1.9	21	94	5	71	33	25	25	15	1.95
2083567--2083714	60	2.5	60	82	7	185	33	15	4	47	1.64
2089082--2089155	31	2.4	30	79	4	85	27	32	25	14	1.95
2089034--2089155	62	2.0	63	82	8	151	25	29	27	17	1.97
2091930--2091968	7	5.6	7	88	11	62	23	28	33	15	1.95
2091968--2092023	13	4.8	12	77	18	57	12	19	48	19	1.80
2091964--2092023	24	2.6	22	85	10	84	11	20	48	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2091964--2092034	24	3.0	22	80	11	70	12	21	45	21	1.84
2097212--2097246	10	3.5	10	96	0	61	8	11	28	51	1.67
2097198--2097248	10	5.1	10	80	0	57	11	11	25	50	1.72
2097657--2098164	259	2.0	249	96	3	926	34	15	17	32	1.91
2098318--2098384	16	4.3	16	92	3	102	10	10	19	59	1.58
2098316--2098376	32	1.9	32	96	0	113	8	13	22	55	1.64
2100041--2100097	28	2.0	28	89	0	87	29	21	19	29	1.97
2100810--2100870	29	2.1	28	82	14	72	47	1	0	50	1.10
2100847--2100889	18	2.4	19	76	11	54	48	0	2	48	1.14
2100928--2101080	5	30.4	5	92	6	184	54	0	5	39	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28