genome.fa.s8082.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  2  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221483--221572	33	2.7	33	87	0	126	43	18	21	16	1.88
221483--221543	19	3.5	19	70	21	51	44	18	22	14	1.86
221568--221718	19	8.7	19	64	21	80	15	22	20	41	1.89
221572--221698	33	3.9	32	87	8	193	14	22	19	42	1.88
221565--221697	66	2.0	66	97	0	248	16	22	19	41	1.90
222502--222545	22	2.0	22	100	0	88	36	18	9	36	1.82
223994--224018	13	1.9	13	100	0	50	0	24	0	76	0.80
224192--224245	24	2.2	24	90	0	81	40	20	16	22	1.91
225035--225086	21	2.5	21	87	3	70	38	17	23	21	1.93
225075--225148	20	3.7	20	76	3	67	37	22	17	21	1.94
225113--225162	20	2.5	20	80	0	73	38	22	18	22	1.94
225376--225463	20	4.4	20	77	5	106	37	25	21	15	1.93
225490--225557	19	3.8	19	83	12	92	13	20	17	48	1.80
225694--225730	14	2.6	14	86	0	56	48	21	0	29	1.50
227585--227649	20	3.3	20	82	2	78	38	23	24	13	1.91
227638--227695	14	3.9	14	79	16	71	48	24	17	10	1.78
227622--227700	32	2.4	33	95	2	142	46	22	18	11	1.81
227729--227785	14	3.8	14	76	17	60	12	17	22	47	1.81
227719--227801	32	2.6	32	96	0	148	13	19	20	46	1.82
227785--227840	21	2.8	19	79	10	67	16	25	23	35	1.94
228310--228354	18	2.5	18	88	0	72	13	15	44	26	1.83
229952--230040	41	2.1	41	95	2	160	20	11	33	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230112--230226	20	5.7	20	77	9	90	23	18	24	33	1.96
230153--230247	41	2.3	41	81	3	111	20	21	23	35	1.96
237290--237399	24	4.6	24	76	10	102	47	17	15	20	1.83
237294--237385	12	7.8	12	71	16	66	47	18	15	18	1.82
237292--237382	47	1.9	48	84	10	125	48	17	15	18	1.82
239817--239862	18	2.6	18	86	6	67	17	17	47	17	1.83
241933--242004	24	3.0	24	81	2	92	51	18	11	19	1.75
244457--244511	13	4.2	13	80	0	65	21	18	41	18	1.90
245437--245471	18	1.9	18	100	0	70	17	14	34	34	1.90
246003--246151	81	1.8	81	95	0	271	32	20	23	24	1.98
249200--249267	31	2.2	31	82	12	86	41	4	0	54	1.20
249569--249628	24	2.5	25	76	15	72	55	1	0	43	1.10
249569--249645	28	3.0	27	71	21	76	50	1	0	48	1.09
249711--249747	17	2.2	17	100	0	74	62	10	10	16	1.55
260318--260719	207	1.9	206	90	2	646	33	30	9	26	1.88
261827--261908	36	2.3	36	91	0	128	62	8	14	14	1.54
265353--265381	14	2.0	15	93	6	51	68	0	0	31	0.89
266842--266897	2	28.0	2	100	0	112	50	0	0	50	1.00
267270--267323	27	2.0	28	85	10	76	46	0	0	53	1.00
267270--267336	28	2.4	27	80	11	66	43	2	1	52	1.25
269034--269094	21	2.8	22	80	2	79	26	22	26	24	2.00
270687--270832	31	4.8	31	91	5	212	20	19	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270687--270819	61	2.2	59	90	5	205	19	19	22	38	1.94
275209--275362	31	5.0	31	95	1	247	20	20	22	37	1.95
279206--279231	6	4.3	6	100	0	52	15	50	0	34	1.45
284096--284733	55	11.6	55	88	3	804	31	23	16	28	1.96
284752--284827	37	2.1	37	87	5	109	25	19	18	36	1.94
286104--286203	8	13.1	8	77	14	79	11	13	0	76	1.03
286120--286221	29	3.3	30	80	13	102	10	12	0	76	1.02
286121--286203	7	11.4	7	80	12	62	10	13	0	75	1.04
286120--286203	14	5.7	14	76	19	82	10	13	0	76	1.03
286155--286221	7	8.4	8	82	11	59	11	8	0	79	0.95
293928--293974	19	2.5	19	92	0	85	51	8	6	34	1.58
294741--294784	19	2.3	19	88	7	63	63	4	2	29	1.26
296700--296752	26	2.2	24	86	10	72	33	18	0	47	1.49
296799--296861	29	2.2	28	86	8	90	42	22	15	19	1.88
296808--296866	29	2.0	29	100	0	118	38	23	16	20	1.92
301240--301364	45	2.7	47	77	10	116	33	20	12	34	1.89
305330--305381	24	2.2	23	82	3	59	36	21	23	19	1.95
305412--305474	23	2.7	23	78	7	74	33	19	28	19	1.96
305376--305474	46	2.1	47	83	1	119	34	19	24	22	1.96
305972--306087	58	2.0	58	100	0	232	24	18	13	43	1.87
306981--307089	16	6.8	16	67	6	58	14	11	26	46	1.79
307066--307114	22	2.2	22	88	0	71	10	12	26	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311185--311561	185	2.0	186	96	3	699	36	10	18	34	1.86
313908--313946	10	3.9	10	79	0	51	15	10	12	61	1.56
313917--313964	20	2.4	20	96	0	87	14	8	16	60	1.57
322493--322894	199	2.0	201	98	1	781	37	15	11	35	1.84
329000--329074	10	7.7	10	67	21	52	58	21	10	9	1.59
329004--329068	16	4.1	16	93	0	112	58	23	10	7	1.57
329819--329874	14	4.3	14	76	17	66	53	23	12	10	1.69
329799--329873	24	3.1	24	86	3	98	56	20	10	13	1.66
330399--330444	15	3.2	15	75	12	51	43	0	0	56	0.99
332160--332203	22	2.0	22	86	0	61	18	18	11	52	1.74
332915--332990	36	2.1	36	97	0	143	43	14	10	31	1.79
335435--335463	14	2.1	14	100	0	58	13	44	27	13	1.82
335885--335960	36	2.1	36	97	0	143	43	14	10	31	1.79
338320--338347	3	9.3	3	100	0	56	0	0	32	67	0.91
341863--342125	55	4.8	56	81	7	263	28	23	18	28	1.98
341863--342124	111	2.4	111	83	4	325	29	23	18	28	1.98
342132--342205	37	2.0	38	91	2	123	22	22	18	35	1.96
343484--343549	21	2.9	23	78	19	84	10	13	0	75	1.04
343487--343550	7	8.7	7	82	16	76	10	14	0	75	1.06
343522--343570	10	5.3	10	79	18	61	8	10	0	81	0.87
343508--343574	26	2.7	24	84	8	89	10	10	0	79	0.95
343502--343559	17	3.6	17	91	8	88	12	10	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353227--353371	45	3.1	45	89	4	200	39	21	12	26	1.89
354965--355346	191	2.0	189	98	1	746	56	9	8	26	1.60
369613--369652	19	2.1	19	85	0	53	17	5	2	75	1.10
369621--369667	19	2.5	20	83	13	64	19	4	0	76	0.95
371257--371313	18	3.2	17	85	2	78	21	7	12	59	1.56
380520--380612	36	2.6	36	96	0	177	29	18	30	22	1.97
391014--391276	130	2.0	130	99	0	517	23	20	28	27	1.99
412018--412098	25	3.4	25	67	16	64	39	11	12	37	1.78
412004--412119	45	2.5	46	85	2	162	44	8	12	33	1.73
417316--417468	82	1.9	83	87	6	231	29	4	9	56	1.52
429114--429243	18	7.7	17	68	16	67	54	8	0	36	1.31
429110--429248	32	4.7	33	77	20	137	53	9	0	37	1.33
429174--429216	22	2.0	22	95	0	77	51	11	0	37	1.39
428996--429810	54	15.5	54	69	24	323	52	11	0	36	1.39
428996--429248	86	3.0	86	80	14	332	52	9	0	36	1.38
429176--429224	22	2.2	22	85	3	62	55	12	0	32	1.37
429218--429265	22	2.2	22	85	7	62	54	4	0	41	1.20
429228--429270	22	2.0	22	95	0	77	51	6	0	41	1.29
429281--429393	40	2.7	41	79	15	133	52	13	0	34	1.41
429309--429381	21	3.4	21	73	15	69	50	16	0	32	1.45
429435--429548	32	3.1	39	74	22	120	55	9	0	34	1.39
429413--429617	76	2.8	74	85	10	264	53	10	0	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429250--429765	108	4.5	113	76	18	362	51	12	0	35	1.41
429140--429808	176	3.8	171	78	14	559	52	11	0	36	1.39
429561--429645	31	2.8	31	85	5	120	52	10	0	36	1.36
429692--429731	21	1.9	21	94	0	71	50	10	0	40	1.36
429720--429803	30	3.1	30	70	25	103	51	13	0	35	1.41
429651--429833	52	3.7	52	84	12	230	50	12	0	36	1.40
429750--429795	22	2.0	22	87	4	65	54	15	0	30	1.41
429790--429947	15	10.5	15	82	11	189	50	3	0	46	1.17
429790--429947	29	5.2	29	81	10	174	50	3	0	46	1.17
430302--430495	11	16.6	11	79	9	156	28	22	19	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28