genome.fa.s8082.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6025995

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  28  of  28  ( 3312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5792062--5792106	19	2.5	18	89	7	65	48	11	20	20	1.79
5794182--5794207	13	2.0	13	100	0	52	46	7	7	38	1.61
5794088--5794344	39	6.7	38	85	4	329	42	7	8	41	1.63
5794088--5794339	75	3.3	76	84	3	321	41	7	9	42	1.64
5794298--5794322	13	1.9	13	100	0	50	40	8	8	44	1.63
5794088--5794370	38	7.4	39	79	8	271	42	7	8	41	1.63
5794093--5794375	113	2.5	113	81	6	279	43	6	8	42	1.60
5794412--5794443	15	2.1	16	88	11	50	28	0	6	65	1.16
5794445--5794488	18	2.5	17	82	13	54	20	6	2	70	1.21
5794456--5794489	17	1.9	18	94	5	61	14	5	2	76	1.09
5805948--5806234	37	7.7	37	89	3	409	43	4	8	42	1.56
5806200--5806256	25	2.4	24	88	5	80	45	3	8	42	1.52
5806163--5806282	60	2.0	60	93	4	206	46	5	6	41	1.52
5806223--5806313	36	2.5	37	84	10	107	48	4	5	41	1.46
5807429--5807471	18	2.4	17	84	11	50	23	2	0	74	0.93
5807429--5807471	12	3.5	12	81	6	50	23	2	0	74	0.93
5808246--5808353	47	2.3	47	81	9	125	32	17	21	28	1.96
5808466--5808568	41	2.5	41	80	12	106	24	20	20	34	1.96
5815105--5815515	58	7.1	58	89	0	585	36	17	11	34	1.86
5815608--5815755	45	3.3	45	83	0	206	32	18	8	39	1.82
5815888--5816074	58	3.3	57	86	6	247	32	12	18	36	1.88
5815888--5816127	55	4.3	55	81	6	250	32	12	17	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5832406--5832458	27	1.9	28	88	3	81	45	15	11	28	1.80
5833627--5833752	35	3.6	35	76	5	119	28	19	19	33	1.96
5837830--5837868	21	1.9	20	89	5	60	35	23	15	25	1.94
5843092--5843133	21	2.0	22	85	4	59	30	42	7	19	1.78
5850376--5850416	20	2.1	19	86	9	55	39	19	17	24	1.92
5869521--5869562	13	3.2	13	89	0	66	28	21	14	35	1.92
5869511--5869562	26	2.0	26	88	0	77	26	19	17	36	1.94
5869719--5869751	2	17.0	2	93	6	59	48	0	0	51	1.00
5871162--5871221	30	2.0	30	100	0	120	36	10	23	30	1.87
5875491--5875531	21	2.0	21	100	0	82	9	29	36	24	1.87
5879994--5880083	42	2.1	42	87	0	126	22	23	22	32	1.98
5880107--5880366	37	7.0	37	86	4	373	40	17	20	22	1.92
5880364--5880535	81	2.1	81	86	0	245	35	22	18	23	1.96
5881487--5881526	21	2.0	20	85	5	53	72	0	25	2	0.97
5884844--5885002	79	2.0	77	93	2	273	59	14	11	14	1.62
5891338--5891508	57	3.0	56	83	1	225	15	17	30	36	1.91
5896003--5896070	24	2.8	25	84	6	97	30	14	19	35	1.92
5896002--5896078	24	3.3	23	78	5	91	28	16	18	36	1.93
5897806--5897839	17	1.9	18	88	5	52	52	0	17	29	1.45
5914555--5914611	27	2.1	27	100	0	114	40	14	10	35	1.80
5919948--5921234	450	2.9	450	91	1	1998	34	11	14	40	1.82
5929422--5929476	23	2.5	22	82	5	67	30	20	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5931699--5931733	12	2.8	13	86	8	54	45	8	5	40	1.58
5934751--5934827	39	2.0	39	84	0	100	49	16	1	32	1.54
5939144--5939193	21	2.4	21	93	6	84	20	24	26	30	1.98
5951232--5951495	138	1.9	138	82	3	325	31	11	16	40	1.85
5952746--5952843	6	17.5	6	72	20	52	53	12	1	33	1.45
5952730--5952846	39	3.0	39	96	0	207	52	12	0	33	1.45
5953560--5953676	58	2.0	58	98	0	225	36	11	11	40	1.78
5953828--5953867	21	1.9	21	84	0	53	27	12	25	35	1.92
5969853--5969916	27	2.4	27	94	0	110	28	0	21	50	1.49
5981269--5981492	96	2.3	95	83	1	259	33	14	23	28	1.94
5981818--5982153	54	6.2	54	82	2	352	31	18	18	32	1.95
5981818--5982153	162	2.1	162	82	1	413	31	18	18	32	1.95
5984744--5984777	16	2.1	17	88	5	52	2	14	32	50	1.58
5986986--5987072	3	28.0	3	73	19	63	64	1	5	28	1.24
5986986--5987072	13	7.0	12	76	16	63	64	1	5	28	1.24
5986986--5987072	10	9.3	9	70	20	63	64	1	5	28	1.24
5986986--5987073	23	3.9	23	75	12	76	64	1	5	28	1.23
5987695--5987982	142	2.0	144	98	1	562	45	7	7	39	1.61
5988286--5988320	17	2.1	17	89	5	54	14	22	0	62	1.31
5992664--5992701	8	4.8	8	96	0	67	57	13	28	0	1.36
6009408--6009467	29	2.1	29	87	0	84	40	13	25	21	1.89
6009660--6009716	27	2.1	27	83	0	69	29	1	10	57	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6013418--6013468	20	2.6	20	84	3	68	33	15	7	43	1.76
6017146--6017199	2	27.0	2	100	0	108	50	0	0	50	1.00
6019743--6019773	15	2.0	16	93	6	55	38	19	6	35	1.77
6020742--6020898	45	3.5	44	91	2	226	30	22	7	39	1.82
6020721--6020898	45	4.0	44	86	7	225	30	21	6	40	1.79
6020980--6021063	40	2.1	40	86	0	114	26	23	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28

The End!